BAC Information

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BAC

Clone NameB6Ng01-036A10
Chromosome17 (Build37)
Map Location 71,908,888 - 72,001,640
singlet/doubletdoublet
Overlap geneSpdya, LOC623451, Wdr43
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740
Downstream gene4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A10.bB6Ng01-036A10.g
ACCDH864333DH864334
length5481,045
definitionDH864333|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A10, 5' end.DH864334|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,908,888 - 71,909,442)(72,000,572 - 72,001,640)
sequence
aagtttgcttgatctggctgcttacaactacttgtaactccagatcctag
ggggcatatttacacacacacacacacacacacacacacacacacacaca
cgtaatttaaaatattttaaaaatatggatcatcctatttcgggttagta
tacaaagaaatgaatttcattgtgacattttggttttttgtttttgtttt
ttcgagacagggtttctctgtgtagccctggctgtcctggaactcacttt
gtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccg
agtgctgggattaaaggcgtgtgccaccacgcccgtcattgtgacatctt
gatccatgtgtattattattcttttttcccctggtttaactatttaacac
tggctggtttaatacttttcttgtagacttgaactggaagatacttacct
gcctctgcctccagagtgatggaattaaaggaatgtgccatgatgcccat
ctacttatttttattcagacttgtcactcattatctctttcctggtaa
gaattcaacaggaatcctgtagatgggaaaggatgctatactttgccctt
taaattagcctttcctggccttatttctgacatttgaacacaaaaccatt
actgcttgttccccctgttccagcattctgtcagcactcatcccagactt
acaatagaatgtgtgcctgtttggaagcactgtaggaaaggagcctaagg
tacaataaaataaaggagcctaaggtacaataagcaggcaggacattaat
gagactatacagggagaggcaagctgagctgcagtgatggctcagaggct
agagccacacaagtagatcctcagaaccggtatacttgtcaggtgggagg
gacagcctgcatacaattccagcctcaactggcaagtcttggtttgaatg
agaccttccctcaaaaattaaggtggaagagtaacaaagattcctgacac
cacacacatgtaatgtgcacacatatagtcccacatattcgaatgcatac
tatagatatacatgtaaaggagggggggaacctataacttaattatggaa
tgtttcccttaagccatatattaaaattttcgaggaaaatgtaccataaa
tgctaagcaaataaaattaggattttttttagtttaaaaatctaactgac
agccatgtgtggcagctcacgcttgtaaccgcagtacaaagacaggtctg
gccacacagcgagttccaggccggcccaaactacagagtgagactctgcc
tcaaacacaaaacagaaccctcaggatggggctgcagagaggactcagca
gttggagggctcggatttggttcccacacacgtggcacacagtcattgct
aactcagaccagatagccaatgctctgctcacaggcatctggcatatatg
cagacaaatactcatacacagaaataaataaagaaaacatcatacagcag
tgaattgcacagtaagtggtttattggtagcctgatgacctgaatctgat
cacaactacatagtagaaaaagcttgctgtctcgacctcacaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71908888_71909442
seq2: B6Ng01-036A10.b_44_597

seq1  GAATTCAAGTTTGCTTGATCTGGCTGCTTACAACTACTTGTAACTCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTGCTTGATCTGGCTGCTTACAACTACTTGTAACTCCAGA  50

seq1  TCCTAGGGGGCATATTTACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGGGCATATTTACACACACACACACACACACACACACACACACA  100

seq1  CACACACGTAATTTAAAATATTTTAAAAATATGGATCATCCTATTTCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGTAATTTAAAATATTTTAAAAATATGGATCATCCTATTTCGGG  150

seq1  TTAGTATACAAAGAAATGAATTTCATTGTGACATTTTGGTTTTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATACAAAGAAATGAATTTCATTGTGACATTTTGGTTTTTTGTTTT  200

seq1  TGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  250

seq1  CACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGC  300

seq1  CTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGTCATTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGTCATTGTGA  350

seq1  CATCTTGATCCATGTGTATTATTATTCTTTTTTCCCCTGGTTTAACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGATCCATGTGTATTATTATTCTTTTTTCCCCTGGTTTAACTATT  400

seq1  TAACACTGGCTGGTTTAATACTTTTCTTGTAGACTTGAACTGGAAGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGGCTGGTTTAATACTTTTCTTGTAGACTTGAACTGGAAGATAC  450

seq1  TTACCTGCCTCTGCCTCCAGAGTGATGGAATTAAAGGAATGTGCCATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCCTCTGCCTCCAGAGTGATGGAATTAAAGGAATGTGCCATGAT  500

seq1  GCCCATCTACTTTATTTTTATTCAGACTTGTCACTCATTATCCTCTTCCT  550
      |||||||||| |||||||||||||||||||||||||||||||   |||||
seq2  GCCCATCTAC-TTATTTTTATTCAGACTTGTCACTCATTATCTCTTTCCT  549

seq1  GGTAA  555
      |||||
seq2  GGTAA  554

seq1: chr17_72000572_72001640
seq2: B6Ng01-036A10.g_66_1110 (reverse)

seq1  AGTTGTGGAGGTCGGAGGACAGCAGAGCTTTCTCTACTATGTAGGTTTTG  50
      |||||| |||||||   ||||||| |||||| ||||||||||||    | 
seq2  AGTTGT-GAGGTCG--AGACAGCA-AGCTTTTTCTACTATGTAG----TT  42

seq1  GTGATCAGATTCAGGTCATCAGGCTTACCAATAAACCACTTTACTGTGCC  100
      |||||||||||||||||||||||| |||||||||||||| |||||||| |
seq2  GTGATCAGATTCAGGTCATCAGGC-TACCAATAAACCAC-TTACTGTG-C  89

seq1  ATTTCACTGGCCTGTATTGATGTTTTTCTTTATTTTATTTTCTGTGTATG  150
      | |||||||  ||||| ||||| ||||||||||||   ||||||||||||
seq2  AATTCACTG--CTGTA-TGATG-TTTTCTTTATTT--ATTTCTGTGTATG  133

seq1  AGTATTTTGTCTGCATATATGCCAGATGCCTGTGGAGCAGAGCATTGGCT  200
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTA-TTTGTCTGCATATATGCCAGATGCCTGT-GAGCAGAGCATTGGCT  181

seq1  ATCCTGGGTCTGGAGTTAGCAATGACTGTGTGCCACCGTGTGTGGGGAAC  250
      |||   ||||| ||||||||||||||||||||||| ||||||| ||||||
seq2  ATC--TGGTCT-GAGTTAGCAATGACTGTGTGCCA-CGTGTGT-GGGAAC  226

seq1  CAAATCCGAGCCCTCCAACTGCTGAGTCCTCTCTGCAGCCCCATCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCGAGCCCTCCAACTGCTGAGTCCTCTCTGCAGCCCCATCCTGAG  276

seq1  GGTTCTGTTTTGTGTTTGAGGCAGGGTCTCACTCTGTAGTTTGGGCCGGC  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTTCTGTTTTGTGTTTGAGGCAGAGTCTCACTCTGTAGTTTGGGCCGGC  326

seq1  CTGGAACTCGCTGTGTGGCCAGACCTGTCTTTGTACTGCGGTTACAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCGCTGTGTGGCCAGACCTGTCTTTGTACTGCGGTTACAAGCG  376

seq1  TGAGCTGCCACACATGGCTGTCAGTTAGATTTTTAAACTAAAAAAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCACACATGGCTGTCAGTTAGATTTTTAAACTAAAAAAAATCC  426

seq1  TAATTTTATTTGCTTAGCATTTATGGTACATTTTCCTCGAAAATTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTTGCTTAGCATTTATGGTACATTTTCCTCGAAAATTTTAAT  476

seq1  ATATGGCTTAAGGGAAACATTCCATAATTAAGTTATAGGTTCCCCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTTAAGGGAAACATTCCATAATTAAGTTATAGGTTCCCCCCCTC  526

seq1  CTTTACATGTATATCTATAGTATGCATTCGAATATGTGGGACTATATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATGTATATCTATAGTATGCATTCGAATATGTGGGACTATATGTG  576

seq1  TGCACATTACATGTGTGTGGTGTCAGGAATCTTTGTTACTCTTCCACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTACATGTGTGTGGTGTCAGGAATCTTTGTTACTCTTCCACCTT  626

seq1  AATTTTTGAGGGAAGGTCTCATTCAAACCAAGACTTGCCAGTTGAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAGGGAAGGTCTCATTCAAACCAAGACTTGCCAGTTGAGGCTG  676

seq1  GAATTGTATGCAGGCTGTCCCTCCCACCTGACAAGTATACCGGTTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTATGCAGGCTGTCCCTCCCACCTGACAAGTATACCGGTTCTGAG  726

seq1  GATCTACTTGTGTGGCTCTAGCCTCTGAGCCATCACTGCAGCTCAGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTTGTGTGGCTCTAGCCTCTGAGCCATCACTGCAGCTCAGCTTG  776

seq1  CCTCTCCCTGTATAGTCTCATTAATGTCCTGCCTGCTTATTGTACCTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTGTATAGTCTCATTAATGTCCTGCCTGCTTATTGTACCTTAG  826

seq1  GCTCCTTTATTTTATTGTACCTTAGGCTCCTTTCCTACAGTGCTTCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTATTTTATTGTACCTTAGGCTCCTTTCCTACAGTGCTTCCAAA  876

seq1  CAGGCACACATTCTATTGTAAGTCTGGGATGAGTGCTGACAGAATGCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACATTCTATTGTAAGTCTGGGATGAGTGCTGACAGAATGCTGG  926

seq1  AACAGGGGGAACAAGCAGTAATGGTTTTGTGTTCAAATGTCAGAAATAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGGAACAAGCAGTAATGGTTTTGTGTTCAAATGTCAGAAATAAG  976

seq1  GCCAGGAAAGGCTAATTTAAAGGGCAAAGTATAGCATCCTTTCCCATCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAAGGCTAATTTAAAGGGCAAAGTATAGCATCCTTTCCCATCTA  1026

seq1  CAGGATTCCTGTTGAATTC  1069
      |||||||||||||||||||
seq2  CAGGATTCCTGTTGAATTC  1045