BAC Information

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BAC

Clone NameB6Ng01-036F03
Chromosome17 (Build37)
Map Location 35,160,056 - 35,247,598
singlet/doubletdoublet
Overlap geneD17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c
Upstream geneRing1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars
Downstream geneLy6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F03.bB6Ng01-036F03.g
ACCDH864534DH864535
length748864
definitionDH864534|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F03, 5' end.DH864535|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,246,852 - 35,247,598)(35,160,056 - 35,160,931)
sequence
gaattccatggctcagatgtccctgccccattccaacggaactgtggctc
tgcaactataagatctctgcttcttgaaagccgtctgccttaacagacct
cttgttagatgtcaccacgctgcctgggctttaatccaagcacttgggag
gcagaggcaggctgatttctgagcttgaggccagcctggtctacagagtg
agttccagggcagccagagctacacagagaaaccctgtctcaaaaaaaaa
aaaaaaaaaaaaaaaaaagtcaccacccttgcctgtttggcgggtgcttc
ctcctctttaaaccccatactcaagggcagggttgggcagatctatgagt
tggaggccaccctggtttacaaagtaggaggccacagccagggctccata
gtgtgagatctgtcgatctgtctcaaaaaaagctatcaaaacaacaacaa
caacaacaacaaaaaaccaaacctccattctatgttatacccccaaagaa
atgtatccatttggcatatatttgaagggctaacctatacccagcattcc
ataagcctaatttacatttacaggggaagaagctgaagctgtcatccagc
cctgttagaacagcctttcctctacgacctagtcatttggtatctcatct
gatctaagtgctatgctaggattgaagtcatgggttagaattgaaggaat
gtagtagttcattctctctctctctctctctctctctctctctctctt
gaattcactgtgtagaccaggctggccttgaactcacagagatctatcta
ttcatcatctttggagggggaacaagaaatgatgacgtcattctaaaccc
ctcacctccaagcacagtccctggtccatgcagggcccgctgacatccat
cctccctgtgggaggcagtcttcccatgtccctcctctgcctttgcttcc
acctccctccatgctttccctctttctctcctttggacctgatcgtatct
ccaggtgactcttcccctggatccccctgtcttcacccctggggagccgt
gtgtgttttctgtggacagtctgctctggcaggtcacagtccggatgcac
ggggacatcagtagcttctggatcaagagccctgcaggtattctaatgtg
gggctcaaggcagacagaagattcaagagtggagaacaggagaaggactg
tgcagagagaaaagaattacttcatgtgacagtgtcttgttcccatccaa
ggggtgtcccagggcccagaggagggcataggtccctctgggtcacactc
gtcgctttgggcattctggacggtgaccatgactgaccctcctcggacag
ggacttgggagatccaggtagcagctgcgggaacccccccgggtgagata
caaggtaaggagagggttcctaaggcacacagtgggtgaaccgtggtggg
cgtggtcctcacaaagtctaaaactgcttcccctcccatcccaacctctt
gggacttcccttttcatttcggtatctctgggaaggatgaccccaccctg
gcctctacccctgaccaccattccgggaagctattccctgaccctgcccc
ttggctgctgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35246852_35247598
seq2: B6Ng01-036F03.b_47_793 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAACTACTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAACTACTACATT  50

seq1  TCTTCAATTCTAACCCATGACTTCAATCCTAGCATAGCACTTAGATCAGA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATTCTAACCCATGACTTCAATCCTAGCATAGCACTTAGATCAGA  100

seq1  TGAGATACCAAATGACTAGGTCGTAGAGGAAAGGCTGTTCTAACAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACCAAATGACTAGGTCGTAGAGGAAAGGCTGTTCTAACAGGGCT  150

seq1  GGATGACAGCTTCAGCTTCTTCCCCTGTAAATGTAAATTAGGCTTATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACAGCTTCAGCTTCTTCCCCTGTAAATGTAAATTAGGCTTATGGA  200

seq1  ATGCTGGGTATAGGTTAGCCCTTCAAATATATGCCAAATGGATACATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGTATAGGTTAGCCCTTCAAATATATGCCAAATGGATACATTTC  250

seq1  TTTGGGGGTATAACATAGAATGGAGGTTTGGTTTTTTGTTGTTGTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTATAACATAGAATGGAGGTTTGGTTTTTTGTTGTTGTTGTTG  300

seq1  TTGTTGTTTTGATAGCTTTTTTTGAGACAGATCGACAGATCTCACACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTGATAGCTTTTTTTGAGACAGATCGACAGATCTCACACTAT  350

seq1  GGAGCCCTGGCTGTGGCCTCCTACTTTGTAAACCAGGGTGGCCTCCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTGGCTGTGGCCTCCTACTTTGTAAACCAGGGTGGCCTCCAACT  400

seq1  CATAGATCTGCCCAACCCTGCCCTTGAGTATGGGGTTTAAAGAGGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCTGCCCAACCCTGCCCTTGAGTATGGGGTTTAAAGAGGAGGAA  450

seq1  GCACCCGCCAAACAGGCAAGGGTGGTGACTTTTTTTTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGCCAAACAGGCAAGGGTGGTGACTTTTTTTTTTTTTTTTTTTTT  500

seq1  TTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGCCCTGGAACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGCCCTGGAACTCAC  550

seq1  TCTGTAGACCAGGCTGGCCTCAAGCTCAGAAATCAGCCTGCCTCTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGCTGGCCTCAAGCTCAGAAATCAGCCTGCCTCTGCCTC  600

seq1  CCAAGTGCTTGGATTAAAGCCCAGGCAGCGTGGTGACATCTAACAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTTGGATTAAAGCCCAGGCAGCGTGGTGACATCTAACAAGAGG  650

seq1  TCTGTTAAGGCAGACGGCTTTCAAGAAGCAGAGATCTTATAGTTGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAGGCAGACGGCTTTCAAGAAGCAGAGATCTTATAGTTGCAGAG  700

seq1  CCACAGTTCCGTTGGAATGGGGCAGGGACATCTGAGCCATGGAATTC  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTCCGTTGGAATGGGGCAGGGACATCTGAGCCATGGAATTC  747

seq1: chr17_35160056_35160931
seq2: B6Ng01-036F03.g_66_929

seq1  GAATTCACTGTGTAGACCAGGCTGGCCTTGAACTCACAGAGATCTATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGACCAGGCTGGCCTTGAACTCACAGAGATCTATCTA  50

seq1  TTCATCATCTTTGGAGGGGGAACAAGAAATGATGACGTCATTCTAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATCTTTGGAGGGGGAACAAGAAATGATGACGTCATTCTAAACCC  100

seq1  CTCACCTCCAAGCACAGTCCCTGGTCCATGCAGGGCCCGCTGACATCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCCAAGCACAGTCCCTGGTCCATGCAGGGCCCGCTGACATCCAT  150

seq1  CCTCCCTGTGGGAGGCAGTCTTCCCATGTCCCTCCTCTGCCTTTGCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTGGGAGGCAGTCTTCCCATGTCCCTCCTCTGCCTTTGCTTCC  200

seq1  ACCTCCCTCCATGCTTTCCCTCTTTCTCTCCTTTGGACCTGATCGTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCCATGCTTTCCCTCTTTCTCTCCTTTGGACCTGATCGTATCT  250

seq1  CCAGGTGACTCTTCCCCTGGATCCCCCTGTCTTCACCCCTGGGGAGCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGACTCTTCCCCTGGATCCCCCTGTCTTCACCCCTGGGGAGCCGT  300

seq1  GTGTGTTTTCTGTGGACAGTCTGCTCTGGCAGGTCACAGTCCGGATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTCTGTGGACAGTCTGCTCTGGCAGGTCACAGTCCGGATGCAC  350

seq1  GGGGACATCAGTAGCTTCTGGATCAAGAGCCCTGCAGGTATTCTAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATCAGTAGCTTCTGGATCAAGAGCCCTGCAGGTATTCTAATGTG  400

seq1  GGGCTCAAGGCAGACAGAAGATTCAAGAGTGGAGAACAGGAGAAGGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAGGCAGACAGAAGATTCAAGAGTGGAGAACAGGAGAAGGACTG  450

seq1  TGCAGAGAGAAAAGAATTACTTCATGTGACAGTGTCTTGTTCCCATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAGAAAAGAATTACTTCATGTGACAGTGTCTTGTTCCCATCCAA  500

seq1  GGGGTGTCCCAGGGCCCAGAGGAGGGCATAGGT-CCTCTGGGTCACACTC  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGTGTCCCAGGGCCCAGAGGAGGGCATAGGTCCCTCTGGGTCACACTC  550

seq1  GTCGCTTTGGGCAATTCTGGACGGTGACCATGACTGACCCTCCTCGGACA  599
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCGCTTTGGGC-ATTCTGGACGGTGACCATGACTGACCCTCCTCGGACA  599

seq1  GGGACTTGGGAGATCCAGGTAGCAGCTGCGGGAA-CCCCCCGGGTGAGAG  648
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  GGGACTTGGGAGATCCAGGTAGCAGCTGCGGGAACCCCCCCGGGTGAGA-  648

seq1  TACAAGGTAAGGAGAAGGGTTCCT-AGGCACAGCAGT-GGTGAGCCGTGG  696
      |||||||||||||| ||||||||| ||||||| |||| ||||| ||||||
seq2  TACAAGGTAAGGAG-AGGGTTCCTAAGGCACA-CAGTGGGTGAACCGTGG  696

seq1  TGGCCGTGGTCCTCACAAAGTCTAAGACTGCTTCCCCTCCCAGCCCAGAC  746
      ||| ||||||||||||||||||||| |||||||||||||||| |||| ||
seq2  TGGGCGTGGTCCTCACAAAGTCTAAAACTGCTTCCCCTCCCATCCCA-AC  745

seq1  CTCTCTGGACTTCCTCTTTCATTTCGGTATCTCTGTGGAGGATGGACCCC  796
      ||||  ||||||||  ||||||||||||||||||| | ||||| ||||||
seq2  CTCTTGGGACTTCCCTTTTCATTTCGGTATCTCTGGGAAGGAT-GACCCC  794

seq1  ACCCTGGCCTCTACCCCCTGACTCAGCCAGTTGCAGGTAGTACTATTCCC  846
      ||||||||||||| |||||||| || ||| || | || ||  ||||||||
seq2  ACCCTGGCCTCTA-CCCCTGAC-CA-CCA-TTCCGGGAAG--CTATTCCC  838

seq1  TGACCTCTGCCCCCTTGGTCTGCTGCAGTG  876
      ||||| ||| |||||||| |||||| ||||
seq2  TGACC-CTG-CCCCTTGG-CTGCTG-AGTG  864