BAC Information

Click to search

BAC

Clone NameB6Ng01-037F18
Chromosome17 (Build37)
Map Location 45,678,284 - 45,830,907
singlet/doubletdoublet
Overlap geneTcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2
Downstream geneLOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037F18.bB6Ng01-037F18.g
ACCDH865249DH865250
length595407
definitionDH865249|Mus musculus domesticus DNA, BAC clone: B6Ng01-037F18, 5' end.DH865250|Mus musculus domesticus DNA, BAC clone: B6Ng01-037F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,830,313 - 45,830,907)(45,678,284 - 45,678,685)
sequence
gaattcaccactcacttccatatgggaacattccacaaacgccagtcact
tggtgcctccgcacatcccagcacctcagtgttctcctcggaacacccgt
gaagtgctgtgctactctacaatcagaaaacaacccgacgaatacagcag
ccaacccgggcaatcggagcgctggacagatgagcccagcttgactaagg
acctgtgcaagtcctctagctgtgatcgcaggcatgagcgacgcagagga
cgcagcccaggctgctcacccactgcatacctatcagctctcttcttccc
ttctcatttcatagaagaggaaactgaggtacagagacttttagtgatct
ccatagagccccacaatgagccttaggacctctgcacccccaggctttga
attgtcgggtctctctgctttttgaacctttgctgaggcagttatatcac
gccacatactaggctaaatgctgtgcactggcatctcatttaactcacaa
acactactgtgcagtgcataccattactgacctctcccccccccccacag
ccaccttaggataagttgaccaaggtgacacaggggtgggtgaca
cgttttctaagatgtggaacagggatagacggtgatctgatgggttaccc
cggcaaccacaccttcatttcacacccttgatatgtctgcccctggttct
gaggtatcgagaagaagggatcacgaatctccttggaatgagcagccaga
tttgtatatatgaagatgccaaggtacataaggggcacctaaggatgaaa
tgtgtgcactagctcccacacctagaaaatggccattactagacccttaa
caggaactgggaaggcaaaggactctaaaagaccatccctgctcaaactc
ttcatgagcaccatctacctcttgactcaccccacccctttcccttttta
ctaagcagatagctgagccctgaccttagtctacacacacactcacacac
ttacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45830313_45830907
seq2: B6Ng01-037F18.b_42_636 (reverse)

seq1  TGTCACCCACCCCTGTGTCACCTTGGTCAACTTATCCTCTGGTGGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TGTCACCCACCCCTGTGTCACCTTGGTCAACTTATCCTAAGGTGGCTGTG  50

seq1  GGGGGGGGGGAGAGGTCAGTAATGGTATGCACTGCACAGTAGTGTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGAGAGGTCAGTAATGGTATGCACTGCACAGTAGTGTTTGTG  100

seq1  AGTTAAATGAGATGCCAGTGCACAGCATTTAGCCTAGTATGTGGCGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGAGATGCCAGTGCACAGCATTTAGCCTAGTATGTGGCGTGAT  150

seq1  ATAACTGCCTCAGCAAAGGTTCAAAAAGCAGAGAGACCCGACAATTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCCTCAGCAAAGGTTCAAAAAGCAGAGAGACCCGACAATTCAAA  200

seq1  GCCTGGGGGTGCAGAGGTCCTAAGGCTCATTGTGGGGCTCTATGGAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGGTGCAGAGGTCCTAAGGCTCATTGTGGGGCTCTATGGAGATC  250

seq1  ACTAAAAGTCTCTGTACCTCAGTTTCCTCTTCTATGAAATGAGAAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGTCTCTGTACCTCAGTTTCCTCTTCTATGAAATGAGAAGGGAA  300

seq1  GAAGAGAGCTGATAGGTATGCAGTGGGTGAGCAGCCTGGGCTGCGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCTGATAGGTATGCAGTGGGTGAGCAGCCTGGGCTGCGTCCTC  350

seq1  TGCGTCGCTCATGCCTGCGATCACAGCTAGAGGACTTGCACAGGTCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCGCTCATGCCTGCGATCACAGCTAGAGGACTTGCACAGGTCCTTA  400

seq1  GTCAAGCTGGGCTCATCTGTCCAGCGCTCCGATTGCCCGGGTTGGCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGGGCTCATCTGTCCAGCGCTCCGATTGCCCGGGTTGGCTGCT  450

seq1  GTATTCGTCGGGTTGTTTTCTGATTGTAGAGTAGCACAGCACTTCACGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCGTCGGGTTGTTTTCTGATTGTAGAGTAGCACAGCACTTCACGGG  500

seq1  TGTTCCGAGGAGAACACTGAGGTGCTGGGATGTGCGGAGGCACCAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGAGGAGAACACTGAGGTGCTGGGATGTGCGGAGGCACCAAGTGA  550

seq1  CTGGCGTTTGTGGAATGTTCCCATATGGAAGTGAGTGGTGAATTC  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTTTGTGGAATGTTCCCATATGGAAGTGAGTGGTGAATTC  595

seq1: chr17_45678284_45678685
seq2: B6Ng01-037F18.g_81_482

seq1  TCTAAGATGTGGAACAGGGATAGACGGTGATCTGATGGGTTACCCCGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATGTGGAACAGGGATAGACGGTGATCTGATGGGTTACCCCGGCA  50

seq1  ACCACACCTTCATTTCACACCCTTGATATGTCTGCCCCTGGTTCTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCTTCATTTCACACCCTTGATATGTCTGCCCCTGGTTCTGAGGT  100

seq1  ATCGAGAAGAAGGGATCACGAATCTCCTTGGAATGAGCAGCCAGATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGAAGAAGGGATCACGAATCTCCTTGGAATGAGCAGCCAGATTTGT  150

seq1  ATATATGAAGATGCCAAGGTACAGAAGGGGCACCTAAGGATGAAATGTGT  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATATATGAAGATGCCAAGGTACATAAGGGGCACCTAAGGATGAAATGTGT  200

seq1  GCACTAGCTCCCACACCTAGAAAATGGCCATTACTAGACCCATAACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCACTAGCTCCCACACCTAGAAAATGGCCATTACTAGACCCTTAACAGGA  250

seq1  ACAGGGAAGGCAAAGGACTCTAAAAGACCATCCCTGCTCAAACTCTTCAT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGGCAAAGGACTCTAAAAGACCATCCCTGCTCAAACTCTTCAT  300

seq1  GAGCACCATCTACCTCTTGACTCACCCCACCCCTTTCCCTTTTTACTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCATCTACCTCTTGACTCACCCCACCCCTTTCCCTTTTTACTAAG  350

seq1  CAGATAGCTGAGCCCTGACCTCAGTCTACACACACACACACACACATACA  400
      ||||||||||||||||||||| ||||||||||||||| ||||||| ||||
seq2  CAGATAGCTGAGCCCTGACCTTAGTCTACACACACACTCACACACTTACA  400

seq1  CA  402
      ||
seq2  CA  402