BAC Information

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BAC

Clone NameB6Ng01-037F20
Chromosome17 (Build37)
Map Location 73,526,099 - 73,655,419
singlet/doubletdoublet
Overlap geneLycat, LOC668709
Upstream geneAlk, Ypel5, Lbh
Downstream geneCapn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037F20.bB6Ng01-037F20.g
ACCDH865253DH865254
length1,0891,046
definitionDH865253|Mus musculus domesticus DNA, BAC clone: B6Ng01-037F20, 5' end.DH865254|Mus musculus domesticus DNA, BAC clone: B6Ng01-037F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,526,099 - 73,527,204)(73,654,376 - 73,655,419)
sequence
gaattcttactggctattgcttctgtcttttgctgcactcatcttgtttc
tttcacctgcttatgttctgatgctctaagactccgccctactccgtttc
tctcacaaggtctcactatacagatcaggctagcctcaaagtctaagaga
tccatttgcctcatgagtgctgtgattaaagatgtgtgccaccctgcctg
gctataattccttctctgtaggagctgggttgtttgcctttccccgaata
aactagataaccacattccttggtttgtggctcctcttctattttcaaag
acaacagtgcctagttgagtcttatacccttttgttttgaaagtgagtcc
ccttcccctgatcttttctacttttaagggctattatgattctttcagtt
cgctaaattaatctaggctgattttccaatcttaaatttagctgcatagt
aacctctgctgccctttgtgtgtaatataacgtatttagctgtgcacgta
ttgtcatgtggctatgtttagcgatttgtcatggttctgcctcccagact
tgaattgctatcatagtctggctctgcaaagctagtcacatacttagctt
gagaattcaataaaggtgtatgtagatgataaagtatctagaaaattgat
caatagcaaatttaaaggatgaaaaacctattggcctgtgttagaataga
acccctaaatgatagcaaatgagaagcctcattttgccaacaaatgccat
cagtgaatgtttcccttttcaatatcagcaagcgtttatagtgtgtgcca
ggaggtaggatcatttctagacaatcactgtagactatagtgggatgtgc
tgtgtgtacattttgggcttgtttccttcacattttgtggcttttcaagt
ttggaattattttgtaaaatagtttgcttagaagacatttacttgctttg
ccttttgttttgagtctggcgctcttgatgtaaaagtgtagcatctgcac
tggggaaagctggggagttacgtctacctcactccagtgcttcagagctc
tgtgatgatgttcctcaggaaggggtgggaacataactc
gaattcccccatacaaaaacttcagagaagaaaggtttattccgacttac
tgcatgatgcgattttagtccgctgtggcggcaaagggctggcagtgccc
agggagcatacggtacgggctcctcacattgtagtgggctaggatgctga
aacagtaggaccagaaccaggcaccaggctatagagccttcaaatcccac
ttctagagacctagactccttatgaactgggtccccagctcctaaaggtt
ccacagcctcctaaacagcgccacctgctggagaacagctattcattcta
caagctacaagagcttgagggattcaaaccgcaaatgtctgtgtgtggaa
aggacaggaagatgaaaatcttccgaccgtgattttgtgagaaaccctca
ctagaaaatggacagcactggcaggattggtcatgcaagaacaaggtcac
catttggaagtgaccacattcactacacagacagcaaacatagccatatt
acagggcgttgctctttggtcatttccccatccaccgtcatgaaatttag
aataaaatagctaatgggctggattgttccgtttacatacgatcttctgc
atgcaaaaatatcggggccgcccgtgctctgttacaagagcagctccaga
agacctgaaccagccgttctgaagagctcagaggtgatcctctgaatatc
tacgtagaaactctagcacaccttgctcccttggctgcctcagccacatg
tgaccctgatcccttctgggttggcccggggttggtcatagggtcaacag
agagcagccctggggcttgcccagaacttctttttcatttactagagact
gctgtgccacagcaattcaggacaggatcctccctcccacttcttgtggt
tgccttctgtgaatactacaccatccctggaacctggaaaaactgagaac
aagcagtcttctatctaattttggggaggagcaagcgaggagtccatccc
caaccactgcaattcgcttacggatgctttcgggaactcattcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73526099_73527204
seq2: B6Ng01-037F20.b_47_1135

seq1  GAATTCTTACTGGCTATTGCTTCTGTCTTTTGCTGCACTCATCTTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGGCTATTGCTTCTGTCTTTTGCTGCACTCATCTTGTTTC  50

seq1  TTTCACCTGCTTATGTTCTGATGCTCTAAGACTCCGCCCTACTCCGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTGCTTATGTTCTGATGCTCTAAGACTCCGCCCTACTCCGTTTC  100

seq1  TCTCACAAGGTCTCACTATACAGATCAGGCTAGCCTCAAAGTCTAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGGTCTCACTATACAGATCAGGCTAGCCTCAAAGTCTAAGAGA  150

seq1  TCCATTTGCCTCATGAGTGCTGTGATTAAAGATGTGTGCCACCCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGCCTCATGAGTGCTGTGATTAAAGATGTGTGCCACCCTGCCTG  200

seq1  GCTATAATTCCTTCTCTGTAGGAGCTGGGTTGTTTGCCTTTCCCCGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATTCCTTCTCTGTAGGAGCTGGGTTGTTTGCCTTTCCCCGAATA  250

seq1  AACTAGATAACCACATTCCTTGGTTTGTGGCTCCTCTTCTATTTTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATAACCACATTCCTTGGTTTGTGGCTCCTCTTCTATTTTCAAAG  300

seq1  ACAACAGTGCCTAGTTGAGTCTTATACCCTTTTGTTTTGAAAGTGAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGCCTAGTTGAGTCTTATACCCTTTTGTTTTGAAAGTGAGTCC  350

seq1  CCTTCCCCTGATCTTTTCTACTTTTAAGGGCTATTATGATTCTTTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTGATCTTTTCTACTTTTAAGGGCTATTATGATTCTTTCAGTT  400

seq1  CGCTAAATTAATCTAGGCTGATTTTCCAATCTTAAATTTAGCTGCATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAATTAATCTAGGCTGATTTTCCAATCTTAAATTTAGCTGCATAGT  450

seq1  AACCTCTGCTGCCCTTTGTGTGTAATATAACGTATTTAGCTGTGCACGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGCTGCCCTTTGTGTGTAATATAACGTATTTAGCTGTGCACGTA  500

seq1  TTGTCATGTGGCTATGTTTAGCGATTTGTCATGGTTCTGCCTCCCAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTGGCTATGTTTAGCGATTTGTCATGGTTCTGCCTCCCAGACT  550

seq1  TGAATTGCTATCATAGTCTGGCTCTGCAAAGCTAGTCACATACTTAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCTATCATAGTCTGGCTCTGCAAAGCTAGTCACATACTTAGCTT  600

seq1  GAGAATTCAATAAAGGTGTATGTAGATGATAAAGTATCTAGAAAATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCAATAAAGGTGTATGTAGATGATAAAGTATCTAGAAAATTGAT  650

seq1  CAATAGCAAATTTAAAGGATGAAAAACCTATTGGCCTGTGTTAGAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAAATTTAAAGGATGAAAAACCTATTGGCCTGTGTTAGAATAGA  700

seq1  ACCCCTAAATGATAGCAAATGAGAAGCCTCATTTTGCCAACAAATGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAAATGATAGCAAATGAGAAGCCTCATTTTGCCAACAAATGCCAT  750

seq1  CAGTGAATGTTTCCCTTTTCAATATCAGGCAAGCGTTTATAGTGTGTGCC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTGAATGTTTCCCTTTTCAATATCA-GCAAGCGTTTATAGTGTGTGCC  799

seq1  AGGAGGTAGGATCATTTCTAGACAATCACTGTAGACTATAGTGGGATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAGGATCATTTCTAGACAATCACTGTAGACTATAGTGGGATGTG  849

seq1  CTGTGTGTACATTTTTGGGCTTGTTTTCCTTCACAATTTTGTGGCTTTTC  900
      ||||||||||| ||||||||||| |||||||||| |||||||||||||||
seq2  CTGTGTGTACA-TTTTGGGCTTG-TTTCCTTCAC-ATTTTGTGGCTTTTC  896

seq1  AAGTTTGGAATTATTTTGTAAAATAGGTTTGCTTTAGAAGACCATTTACT  950
      ||||||||||||||||||||||||| |||||| |||||||| ||||||||
seq2  AAGTTTGGAATTATTTTGTAAAATA-GTTTGC-TTAGAAGA-CATTTACT  943

seq1  TGCTTTGCCTTTTGTTTTGAGTCTGGCGCCTCTGAATGTAATAGTGTAAG  1000
      |||||||||||||||||||||||||||| ||||  |||||| ||||| ||
seq2  TGCTTTGCCTTTTGTTTTGAGTCTGGCG-CTCTTGATGTAAAAGTGT-AG  991

seq1  CATCTGCACTGGGGAGAGCTTGTGAGTTAACAGTCTACCTCACTCAGGTG  1050
      ||||||||||||||| |||| | ||||||   |||||||||||||  |||
seq2  CATCTGCACTGGGGAAAGCTGGGGAGTTA--CGTCTACCTCACTCCAGTG  1039

seq1  CCTTCAGAGGCTCTGTGGAAATTGATGTT-CTCAGGAGAGGGTGGGGAAC  1099
       ||||||| ||||||||     ||||||| ||||||| ||||  ||||||
seq2  -CTTCAGA-GCTCTGTG----ATGATGTTCCTCAGGA-AGGGGTGGGAAC  1082

seq1  ATTACTC  1106
      || ||||
seq2  ATAACTC  1089

seq1: chr17_73654376_73655419
seq2: B6Ng01-037F20.g_69_1114 (reverse)

seq1  GGGGAAACTGAGTCCCAGAAAGCATCCGTAAACGCATATGCAGTGGTTGG  50
      ||||||  ||||| || |||||||||||||| || || ||||||||||||
seq2  GGGGAA--TGAGTTCCCGAAAGCATCCGTAAGCGAAT-TGCAGTGGTTGG  47

seq1  GGGTGGACTCCTCCGGCTTTGCTCCTCCCCAAAATAGGAATGAAGACCTG  100
      || ||||||||||  || |||||||||||||||||  ||  ||||| |||
seq2  GGATGGACTCCTC--GC-TTGCTCCTCCCCAAAATTAGATAGAAGA-CTG  93

seq1  CTTGTTTCTCAGTTTTTCCAGGTTCACGGGATGTGTGTAGTATTCACAGA  150
      |||| ||||||||||||||||||||  |||||| ||||||||||||||||
seq2  CTTG-TTCTCAGTTTTTCCAGGTTCCAGGGATG-GTGTAGTATTCACAGA  141

seq1  AGGCAACCAC-AGAGGT-GGAGGGAGGATCCTGGTCTGAATTGCTGTGG-  197
      |||||||||| ||| || |||||||||||||||  |||||||||||||| 
seq2  AGGCAACCACAAGAAGTGGGAGGGAGGATCCTGTCCTGAATTGCTGTGGC  191

seq1  ACAGCAG--TCTAGTAAATGAAAAAGAAG-TCT-GGCCAGCCCCAGGGCT  243
      |||||||  |||||||||||||||||||| ||| ||| ||||||||||||
seq2  ACAGCAGTCTCTAGTAAATGAAAAAGAAGTTCTGGGCAAGCCCCAGGGCT  241

seq1  GCTCTCTGTTGACCCTATGACCAA-CCCAGGCCAACCCAGAAGGGGATCA  292
      |||||||||||||||||||||||| ||| ||||||||||||| |||||||
seq2  GCTCTCTGTTGACCCTATGACCAACCCCGGGCCAACCCAGAA-GGGATCA  290

seq1  GGGTCACATGTGGCTGAGGCAGCCAAGGGAGC-AGGTGTGCTAGAGTTTC  341
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGTCACATGTGGCTGAGGCAGCCAAGGGAGCAAGGTGTGCTAGAGTTTC  340

seq1  TACGTAGATATTCAGAGGATCACCTCTGAGCTCTTCAGAACGGCTGGTTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAGATATTCAGAGGATCACCTCTGAGCTCTTCAGAACGGCTGGTTC  390

seq1  AGGTCTTCTGGAGCTGCTCTTGTAACAGAGCACGGGCGGCCCCGATATTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCTGGAGCTGCTCTTGTAACAGAGCACGGGCGGCCCCGATATTT  440

seq1  TTGCATGCAGAAGATCGTATGT-AACGGAACAATCCAGCCCATTAGCTAT  490
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGCATGCAGAAGATCGTATGTAAACGGAACAATCCAGCCCATTAGCTAT  490

seq1  TTTATTCTAAATTTCATGACGGTGGAT-GGGAAATGACC-AAGAGCAACG  538
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TTTATTCTAAATTTCATGACGGTGGATGGGGAAATGACCAAAGAGCAACG  540

seq1  CCCTGTAATATGGCTATGTTTGCTGTCTGTGTAGTGAATGTGGTCACTTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAATATGGCTATGTTTGCTGTCTGTGTAGTGAATGTGGTCACTTC  590

seq1  CAAATGGTGACCTTGTTCTTGCATGACCAATCCTGCCAGTGCTGTCCATT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTGACCTTGTTCTTGCATGACCAATCCTGCCAGTGCTGTCCATT  640

seq1  TTCTAGTGAGGGTTTCTCACAAAATCACGGTCGGAAGATTTTCATCTTCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGAGGGTTTCTCACAAAATCACGGTCGGAAGATTTTCATCTTCC  690

seq1  TGTCCTTTCCACACACAGACATTTGCGGTTTGAATCCCTCAAGCTCTTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCACACACAGACATTTGCGGTTTGAATCCCTCAAGCTCTTGT  740

seq1  AGCTTGTAGAATGAATAGCTGTTCTCCAGCAGGTGGCGCTGTTTAGGAGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTAGAATGAATAGCTGTTCTCCAGCAGGTGGCGCTGTTTAGGAGG  790

seq1  CTGTGGAACCTTTAGGAGCTGGGGACCCAGTTCATAAGGAGTCTAGGTCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAACCTTTAGGAGCTGGGGACCCAGTTCATAAGGAGTCTAGGTCT  840

seq1  CTAGAAGTGGGATTTGAAGGCTCTATAGCCTGGTGCCTGGTTCTGGTCCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTGGGATTTGAAGGCTCTATAGCCTGGTGCCTGGTTCTGGTCCT  890

seq1  ACTGTTTCAGCATCCTAGCCCACTACAATGTGAGGAGCCCGTACCGTATG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCAGCATCCTAGCCCACTACAATGTGAGGAGCCCGTACCGTATG  940

seq1  CTCCCTGGGCACTGCCAGCCCTTTGCCGCCACAGCGGACTAAAATCGCAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGCACTGCCAGCCCTTTGCCGCCACAGCGGACTAAAATCGCAT  990

seq1  CATGCAGTAAGTCGGAATAAACCTTTCTTCTCTGAAGTTTTTGTATGGGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTAAGTCGGAATAAACCTTTCTTCTCTGAAGTTTTTGTATGGGG  1040

seq1  GAATTC  1044
      ||||||
seq2  GAATTC  1046