BAC Information

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BAC

Clone NameB6Ng01-037H19
Chromosome17 (Build37)
Map Location 83,852,936 - 84,028,278
singlet/doubletdoublet
Overlap geneEml4, Cox7a2l, Kcng3
Upstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226
Downstream geneMta3, Haao, Zfp36l2, Thada, Plekhh2, Dync2li1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H19.bB6Ng01-037H19.g
ACCDH865335DH865336
length896358
definitionDH865335|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H19, 5' end.DH865336|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,852,936 - 83,853,833)(84,027,942 - 84,028,278)
sequence
gaattcaatgtttattagtgattgccatgccctgagcttacagaggcttt
tgcaaagctccagggacactgaggtgggaggctgggatcctggctacagc
tttaccgatacctgggatccttgctttgcaaactcgtcacactcacacta
ctctaaaactgcacaaagctatcacgggagatgacgctgacgttggtgct
gagctgcactttatatcccctgtggtctgaacaggaagcactgttgcagc
agcttacagggttgttttttgttttgtttttttaaggatgtatcttgttt
attagtgttcttgcctagctagcatgcacaaggccttgctttgatcccca
acactacataaactgaacatttggaaggtagagacaagatatttaaggcc
atcctcaactacattacaagttcaaggctagcctgggataacaagaagac
ccacttaaaaacaactttaatgcctccccaactccaccaaacacagagag
ggagagagacatacagagagacagagacagagattgagagagaaaggctg
ttgcttacagggtttttaaagaaaatatttgtagagtgcatgatcctgct
gtaactgtaaaggactacattcagtctgaagtctctgtgcctgccatgtt
tctgttgcttactgggaccaggttcttgcttagggaaatgtgaactgtct
gcgaattcaccctgtagctctgctaaagctggttccagagagatactaaa
gtctaataaaacgtgttatttctcgtgtttccatttttttcctaccatat
taaggggtgtttcgatcacagacaatccaagctcatgatggcagttgtgt
ttacacttggtcagatgagaaatgggatgccttttacctggaggcg
gtttttttcccctttttttcccccttgtagaccttgaggttgatgggaac
cctatgcccgtcaggcaagtaagtgactttgctatttacttccatcctca
gctcacaatcttgatccatctcatcacagtttctaaagtgtctttcctga
gcgtccattgttccaaacactgtaactttttctcataaagaaaagttaag
ctcataatctcttagctttcttactctctagccctctttctttcccttcc
ccccatctctctacgtgaccatggcctctctctttctaccttccctcttg
ttctctgcctttctacaataaagctctaataccaataaaaaaaaaagaaa
gaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83852936_83853833
seq2: B6Ng01-037H19.b_44_939

seq1  GAATTCAATGTTTATTAGTGATTGCCATGCCCTGAGCTTACAGAGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTTATTAGTGATTGCCATGCCCTGAGCTTACAGAGGCTTT  50

seq1  TGCAAAGCTCCAGGGACACTGAGGTGGGAGGCTGGGATCCTGGCTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTCCAGGGACACTGAGGTGGGAGGCTGGGATCCTGGCTACAGC  100

seq1  TTTACCGATACCTGGGATCCTTGCTTTGCAAACTCGTCACACTCACACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGATACCTGGGATCCTTGCTTTGCAAACTCGTCACACTCACACTA  150

seq1  CTCTAAAACTGCACAAAGCTATCACGGGAGATGACGCTGACGTTGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAACTGCACAAAGCTATCACGGGAGATGACGCTGACGTTGGTGCT  200

seq1  GAGCTGCACTTTATATCCCCTGTGGTCTGAACAGGAAGCACTGTTGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCACTTTATATCCCCTGTGGTCTGAACAGGAAGCACTGTTGCAGC  250

seq1  AGCTTACAGGGTTGTTTTTTGTTTTGTTTTTTTAAGGATGTATCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACAGGGTTGTTTTTTGTTTTGTTTTTTTAAGGATGTATCTTGTTT  300

seq1  ATTAGTGTTCTTGCCTAGCTAGCATGCACAAGGCCTTGCTTTGATCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTCTTGCCTAGCTAGCATGCACAAGGCCTTGCTTTGATCCCCA  350

seq1  ACACTACATAAACTGAACATTTGGAAGGTAGAGACAAGATATTTAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATAAACTGAACATTTGGAAGGTAGAGACAAGATATTTAAGGCC  400

seq1  ATCCTCAACTACATTACAAGTTCAAGGCTAGCCTGGGATAACAAGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAACTACATTACAAGTTCAAGGCTAGCCTGGGATAACAAGAAGAC  450

seq1  CCACTTAAAAACAACTTTAATGCCTCCCCAACTCCACCAAACACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAAAACAACTTTAATGCCTCCCCAACTCCACCAAACACAGAGAG  500

seq1  GGAGAGAGACATACAGAGAGACAGAGACAGAGATTGAGAGAGAAAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGACATACAGAGAGACAGAGACAGAGATTGAGAGAGAAAGGCTG  550

seq1  TTGCTTACAGGGTTTTTAAAGAAAATATTTGTAGAGTGCATGATCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACAGGGTTTTTAAAGAAAATATTTGTAGAGTGCATGATCCTGCT  600

seq1  GTAACTGTAAAGGACTACATTCAGTCTGAAGTCTCTGTGCCTGCCATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTAAAGGACTACATTCAGTCTGAAGTCTCTGTGCCTGCCATGTT  650

seq1  TCTGTAGCTTACTGGGACCAGGTTCTTGCTTAGGGAAATGTGAACTGTCT  700
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTTACTGGGACCAGGTTCTTGCTTAGGGAAATGTGAACTGTCT  700

seq1  GCGAATTCACCCTGTAGCTCTGCTAAAGCTGGTTTCCAGAGAGATACTAA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCGAATTCACCCTGTAGCTCTGCTAAAGCTGG-TTCCAGAGAGATACTAA  749

seq1  AGTCTAATAAAACGTGTTTATTTCTCGTGTTTTCATTTTTTTCTTACCAT  800
      |||||||||||||||| ||||||||||||||| |||||||||| ||||||
seq2  AGTCTAATAAAACGTG-TTATTTCTCGTGTTTCCATTTTTTTCCTACCAT  798

seq1  ATT-AGGTGTGTATCAGATCAACAGACAAATCAAAGCTCATGATGGCAG-  848
      ||| ||| |||| || |||| |||||| |||| |||||||||||||||| 
seq2  ATTAAGGGGTGTTTC-GATC-ACAGAC-AATCCAAGCTCATGATGGCAGT  845

seq1  TGTGTTTACACTTTGTCAGATGAGAAATGGGATG-CTATTAACTGGAGGC  897
      ||||||||||||| |||||||||||||||||||| || ||| ||||||||
seq2  TGTGTTTACACTTGGTCAGATGAGAAATGGGATGCCTTTTACCTGGAGGC  895

seq1  G  898
      |
seq2  G  896

seq1: chr17_84027942_84028278
seq2: B6Ng01-037H19.g_20_358 (reverse)

seq1  TTTCTTTCTTTCTTTTTTTTTTTTTGGTTTTAGAGCTTTATTGTAGAAAG  50
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTTTTTTTTATTGGTATTAGAGCTTTATTGTAGAAAG  50

seq1  GCAGAGAACAAGAGGGAAGGTAGAAAGAGAGAGGCCATGGTCACGTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAACAAGAGGGAAGGTAGAAAGAGAGAGGCCATGGTCACGTAGAG  100

seq1  AGATGGGGGGAAGGGAAAGAAAGAGGGCTAGAGAGTAAGAAAGCTGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGATGGGGGGAAGGGAAAGAAAGAGGGCTAGAGAGTAAGAAAGCTAAGAG  150

seq1  CTTATGAGCTTAACTTTTCTTTATGAGAAAAAGTTACAGTGTTTGGAACA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGCTTAACTTTTCTTTATGAGAAAAAGTTACAGTGTTTGGAACA  200

seq1  ATGGACGCTCAGGAAAGACACTTTAGAAACTGTGATGAGATGGATCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGCTCAGGAAAGACACTTTAGAAACTGTGATGAGATGGATCAAGA  250

seq1  TTGTGAGCTGAGGCTGGGAAGTAAATAGC-AAGTCACTTACTTGCCTGGC  299
      ||||||||||||| | ||||||||||||| |||||||||||||||||| |
seq2  TTGTGAGCTGAGGAT-GGAAGTAAATAGCAAAGTCACTTACTTGCCTGAC  299

seq1  GGGC-TAGGGTTCCCATCAACCTC-AGGTCTACAAGGGGG  337
      |||| ||||||||||||||||||| |||||||||||||||
seq2  GGGCATAGGGTTCCCATCAACCTCAAGGTCTACAAGGGGG  339