BAC Information

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BAC

Clone NameB6Ng01-037O21
Chromosome17 (Build37)
Map Location 52,126,121 - 52,284,189
singlet/doubletdoublet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037O21.bB6Ng01-037O21.g
ACCDH865651DH865652
length538279
definitionDH865651|Mus musculus domesticus DNA, BAC clone: B6Ng01-037O21, 5' end.DH865652|Mus musculus domesticus DNA, BAC clone: B6Ng01-037O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,283,640 - 52,284,189)(52,126,121 - 52,126,399)
sequence
gaattcataaaggtgtgttctgaattttcacatacttgatctgaaaattg
tgtaaaagccgatatgtctccaaatatttttaaaaccgtaaaaggaatgt
tagcatatttgagtggcagctaaagtcattagaaatctcaagttaataaa
aaaaaaaatagtaccacagattaaccacgcaactctcctgtgttctactg
taaagaactttacactaataaaaataccactttctctgctttacatattg
gaattctatgtcagctttttgtttgcataatgtgctcagctctgtgagaa
agttggaaagcctcttccttaatgtgtagcatctctctcagccagacccc
ctcatcccacccattacattatcctcctgcctgagcagccgcaaagtcag
ctagtattgaatatatcatagagtctaaaacacatgaattgtagaggtgc
tgggattgatgtctacacaaagagaaaaccactcctaatgaaaagtggca
gatttcaatcaaagatctaaattttttaaagaataaaa
caagccaattctggaatgggattggttagtgtttggagttctggcagccg
ctatacctttgtctgcgttgggctgaagcctgtgttttctggaggcattt
ctttgtatctgcatttacaattagctctttgaaagggagggctggaaggg
gtgcctttactcgatgtgggaatcagagagactccagcacgccattcact
gcattttttccccccaagaaatctcaggaacacgcaaagcacaggtggca
atgtgacggagggaggggggtgagtgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52283640_52284189
seq2: B6Ng01-037O21.b_45_582 (reverse)

seq1  TTTTATTCTTTTTAAAAATTTAAGATCTTTGAATTGATAATCTGCCACAT  50
      ||||||||  |||||||| || ||||||||| ||||| |||||||||| |
seq2  TTTTATTC--TTTAAAAAATTTAGATCTTTG-ATTGA-AATCTGCCAC-T  45

seq1  TTTCATTAGGAGTGGTTTTCTCTTTGTGTAGTACATCAAATCACAGCACC  100
      ||||||||||||||||||||||||||||||| ||||| |||| |||||||
seq2  TTTCATTAGGAGTGGTTTTCTCTTTGTGTAG-ACATC-AATCCCAGCACC  93

seq1  TCTTACAATTCATTGTGTTTTTAGACTCTATGATATATTACAATACTAGC  150
      || ||||||||| |||| ||||||||||||||||||||| ||||||||||
seq2  TC-TACAATTCA-TGTG-TTTTAGACTCTATGATATATT-CAATACTAGC  139

seq1  TGACCTTTGCCGGCTGCTCAGGCA-GAGGATACATGTAATTGGGTGGGAT  199
      ||| ||||| |||||||||||||| ||||||| |||||| ||||||||||
seq2  TGA-CTTTG-CGGCTGCTCAGGCAGGAGGATA-ATGTAA-TGGGTGGGAT  185

seq1  GA-GGGGTCTGGCTGAGAGAGATGCTACACATTAAGGAAGAGGCTTTCCA  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTCTGGCTGAGAGAGATGCTACACATTAAGGAAGAGGCTTTCCA  235

seq1  ACTTTCTCACAGAGCTGAGCACATTATGCAAAC-AAAAGCTGACATAGAA  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTTCTCACAGAGCTGAGCACATTATGCAAACAAAAAGCTGACATAGAA  285

seq1  TTCCAATATGTAAAGCAGAGAAAGTGGTATTTTTATTAGTGTAAAGTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATATGTAAAGCAGAGAAAGTGGTATTTTTATTAGTGTAAAGTTCT  335

seq1  TTACAGTAGAACACAGGAGAGTTGCGTGGTTAATCTGTGGTACTATTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAGAACACAGGAGAGTTGCGTGGTTAATCTGTGGTACTATTTTT  385

seq1  TTTTTTATTAACTTGAGATTTCTAATGACTTTAGCTGCCACTCAAATATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTAACTTGAGATTTCTAATGACTTTAGCTGCCACTCAAATATG  435

seq1  CTAACATTCCTTTTACGGTTTTAAAAATATTTGGAGACATATCGGCTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTCCTTTTACGGTTTTAAAAATATTTGGAGACATATCGGCTTTT  485

seq1  ACACAATTTTCAGATCAAGTATGTGAAAATTCAGAACACACCTTTATGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTTCAGATCAAGTATGTGAAAATTCAGAACACACCTTTATGAA  535

seq1  TTC  550
      |||
seq2  TTC  538

seq1: chr17_52126121_52126399
seq2: B6Ng01-037O21.g_74_352

seq1  CAAGCCAATTCTGGAATGGGATTGGTTAGTGTTTGGAGTTCTGGCAGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAATTCTGGAATGGGATTGGTTAGTGTTTGGAGTTCTGGCAGCCG  50

seq1  CTATACCTTTGTCTGCGTTGGGCTGAAGCCTGTGTTTTCTGGAGGCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTTTGTCTGCGTTGGGCTGAAGCCTGTGTTTTCTGGAGGCATTT  100

seq1  CTTTGTATCTGCATTTACAATTAGCTCTTTGAAAGGGAGGGCTGGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTGCATTTACAATTAGCTCTTTGAAAGGGAGGGCTGGAAGGG  150

seq1  GTGCCTTTACTCGATGTGGGAATCAGAGAGACTCCAGCACGCCATTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTACTCGATGTGGGAATCAGAGAGACTCCAGCACGCCATTCACT  200

seq1  GCATTTTTTCCCCCCAAGAAATCTCAGGAACACGCAAAGCACAGGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTCCCCCCAAGAAATCTCAGGAACACGCAAAGCACAGGTGGCA  250

seq1  ATGTGACGGAGGGAGGGGGGTGAGTGTAA  279
      |||||||||||||||||||||||||||||
seq2  ATGTGACGGAGGGAGGGGGGTGAGTGTAA  279