BAC Information

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BAC

Clone NameB6Ng01-040E11
Chromosome17 (Build37)
Map Location 14,285,432 - 14,285,830
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik
Downstream geneDact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E11.bB6Ng01-040E11.g
ACCDH867297DH867298
length1,023989
definitionDH867297|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E11, 5' end.DH867298|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagacacccaaccgaagaaacacattagcctgttgaagtcaaatc
ataaaaaaataaaataaaataaaacaaaatatggccaagatagcatgtct
cctatcaaaaccactaatactataggagtggtatctagggagaacatcct
agatttaacccaggacacagaaattaaaaaaatactaaactctaacaaac
aatccaagaaattaaaaaaaaaacacttcattgaacatcgagaggataat
aaacatgtgaatgaggtaaaagaaaacaaaacaaaaaataaaaaccagag
acatacaacaagaaaggtaacttagagttcaaaactaaatttgataggga
tagaaacattgatgagaacagaacacaagtaaaataaatatggaattgaa
aaagtcaatattcaaattagaaaactccagagaaagaaagtagaatgaat
caagcagaagatagaatgtcagaagttgaagggaaactagaggatctagg
taaaatgatcgaagaatatgaaaaaccattaaaagcacagacaagaaaaa
cccaggaaatacaggataccatcaaatggctaagtatgcaaataatagac
atagaggggggagaaaaatgccaagttgatgatgtagacctgatctttag
caagattgtagaagtaaacttccttttgctaaagattgatgtacctttaa
gggatataagaagtgtgtaggaccccagccaggagacaaccatgaaagaa
aatcccatagtgaaaacattaattatacgaaaaaaaaaagaataagaaaa
gaaaaagaaaacattgaaagctgaaagagaagaaaaacaagccacataca
agagagtttccatcagaataaatctgatttctcaatgaaaactgaaaatg
agaagaacatagaataatgtgttcaagctaaaacactacaactgcccagc
tagactattgtactcagcagactgtcttctgtaattgaaaaagatttttt
ttgaagggggggggttggtttta
gaattcctgatctttccaacacctttatcatgaaggggtgttggatttta
tcaaatgtttctcagcatctaatgagatgatcatgtagtttttgtctttg
agtttctttatatagtggacaacgttgatggatttccgtatattgagcca
tcactgcatccctgggatgaagtataattgatcatgatggatgttcgttt
tgatctattcttggattttgtttgcaaggattttattgagtatttttgca
tcgatattcataagggacattggtctgaagttctttctttgttgggtctt
tgtgtggtttacatatcacagtaattgtgacttcatagaatgaattgggt
agagtacctcctgtttcaattttgtggaataatttgaggagagttggaat
taggtcttctttggaggtctgatagaactctgcactaaacccatctgatc
ctgggctttttttggttgggagactattgatgactgcttctatttcttta
ggggaaatgggactgtttagatcgttaatctgatcctgatttaactttgg
tacatggtatctgtctaggaagtccatttcatctatgttttctagttttg
ttgagtatagccttttgtagtaggatctgatgatgttttggatttcctta
gatttgttgttatgtctcctttttcatctgattgtgttaattaggatact
gtccttgtgccctctagttagtctggctaagggtttgtctatcttgttga
ttttctcaaagaaccagctcctggtttggttgattctttgaatagttctt
ctgtttccactttggttgattttagccctaagtttgattatttcctgcca
tctactcttgcgtgaatttgcttccttttgttctagagcttctagtgtgc
tgtcagctgagtgtatgctctctctagtttcttttctttttttctttctt
tcttttttttgaaaccctcaggtctatgagtttttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14285432_14285830
seq2: B6Ng01-040E11.g_990_1056 (reverse)

seq1  AAAGAAAAGAAAAA---AAAGA-AAGAAAATGAAAAAAGAAAACAAACAA  46
           |||||||||   | |||   ||   |   |||| |||| ||| ||
seq2  -----AAAGAAAAACTCATAGACCTGAGGGTTTCAAAA-AAAAGAAAGAA  44

seq1  ACAAACAAACAACAACAACAACAACAAACAAGTGCTCTGGTGAAACTGGA  96
      | ||| ||| || |  ||| | |                           
seq2  AGAAAAAAAGAAAAGAAACTAGA---------------------------  67

seq1  ACTCTCCAGTCATGGATCTTGGAGGACAGTGGCCTTATTTTTTCCCTCTA  146
                                                        
seq2  --------------------------------------------------  67

seq1  TATCCCAGTCACATCTCCCCACCCCCACCCACCGTGGGTAGCACAGGAAC  196
                                                        
seq2  --------------------------------------------------  67

seq1  CCATGCAGGTGAGTTCCAGGAAGCTGACAGCACTGCAGGTGATAGCAAGA  246
                                                        
seq2  --------------------------------------------------  67

seq1  GGGCACTCAACTTGGGGAAAGGTGACATGGGAAAAGCCCCTGCTCTGTGG  296
                                                        
seq2  --------------------------------------------------  67

seq1  ACTTTACGCTAGATTCCTGGGAAAGCTGGTGTGTGACAGTACCAGGTGAC  346
                                                        
seq2  --------------------------------------------------  67

seq1  ACCTCAGCTTGCTTTAGTGAGTCTAAGTGAGTGAAAAAAAGAAAAGAAAT  396
                                                        
seq2  --------------------------------------------------  67

seq1  AGA  399
         
seq2  ---  67