BAC Information

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BAC

Clone NameB6Ng01-040H04
Chromosome17 (Build37)
Map Location 50,736,173 - 50,874,001
singlet/doubletdoublet
Overlap genePlcl2, EG654432, Tbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneLOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040H04.bB6Ng01-040H04.g
ACCDH867412DH867413
length1,1391,087
definitionDH867412|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H04, 5' end.DH867413|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,872,847 - 50,874,001)(50,736,173 - 50,737,268)
sequence
gaattctaccccctgcctctgaccagtcttctcagcattctgaggagcct
gcttgcatacatgtcccatgaagctgctctgtaagaatcagggccaccat
ccatccctgctagaaggcttccagcaagcattccacttaaagccttgaca
taaccgtgtcagtaccttagatctagtgtgggaagtattgactgatccat
ccaggtctgggacagtgccggccatgtctgtcactgctgagccctgtccc
cagcatctcctttgcgttgagaataaggtcaatagataactatcactggc
tacccaccaggccaagaagatgataggctgacccattactgtttgaatgg
acatttcataacccctcgacctacctgccctgcccatgcccgtgatgtgc
cccgctcctgtgcttgtgtgggtgccacatgagaaccccaggttcacact
gagatgtttctatggtccctaggcaggccactctctccttggaagaacca
aggatggaaagctcttctctaagtgactctattcttcgttggtgaccatt
gcttcccttggttacctacactgctggtttgggatgcattccgtccctgt
tattttatcaggtacttctgtctaattgtacattttaaagtcctggatat
atagaacctttttctttaaccacatggtaatcatcagttttaatctctca
cattttgattatagcagctaatacagttttatacaagccaagcctagatt
aagccctactgtcgtctgcttttttatacacatttctgtgtttcatgcag
tcctctctgatcagattggaagtgtgaagtaaaacatacctgtgtgccac
agagggtcggttcagtgcctcggttcagttctcgagaatttcctggctag
cttggcagatgaccttctgcttctgcactaactgcaacttgaagtgacca
cactgctgctgagtgtaactctggaggcagctgcttcccggagccagttc
tcgtagggtgatctcctcgcacgggttgctgtgctggacaacttgccagc
catgtcttattgtcgaaaggctggacaaatgccaacttcttgatacttgc
tgttcgatacaggtggcttttgcttgtctaagcctccca
gaattcttgtctagctgccaacattgatctagttatggcaatctaaaaat
ctaaaacagagcatgtttgtttgtttgtttttgatttttaaataccttct
acttgagataagactaacccacataaaacagtcagagcactgaatcaggc
actgaatcattaagtgttgaattacagagtagaagtgataaataccgtag
aggctatagagaagagataatagaactgagactgggctactgtttggaac
ttaaaagaatattttacagagagctgagtttgtctttgatatgattcatt
attttaggtctttttttctgatctattacctttacacatacagaaatttc
ttatgaatgttaaccattggattttaaaaggcctcccaaaagtttttttt
tttcctgtaagattgaaaacttaaataattgtgagtttataatatagtta
tggggcattgtcttagtaactttctgtccttgtgaagggacaccataatc
aaggcaacttacaagagaaaacctttagttgggggactgcttagtttcag
agggtgagcccatgaccatcatggcagggagctggcaggcagacatggtg
ggtgctggaggagcatctgcgcaggaggcgagaaagtgacagtgggtctg
gtttgggctttggaaacctcggagcccacccccagtgacatacctcctcc
aaccaggacatgccttctaatccttctaacggttccatcaattggacact
aaacattcaaacatatgggcctgtgggtgccgttctcatttcaaatcatc
ataggcagctttcctgaaaatttaattttaaaaaatgttgtagattcatt
aaaatttctgattcaaagagttgctgttggtcactcactgtgtttgctct
gtgtttgatctggcctaggcatgagcattccccttaactgctaactactg
ctttgctattccattttcctcagccctgagcatgcagtactcagatgtaa
aagagagagactaaatcattcttctattatttttgaataatgaagaccac
cacagcttaggggagaaaatgtatgatgagtcagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50872847_50874001
seq2: B6Ng01-040H04.b_31_1169 (reverse)

seq1  TGGGAGAGCTTTTAGCAAGCAAAAGCAACCTGTACTGAACAGCAGGTTAT  50
      |||||| ||||  | ||||||||||| |||||||  |||||||| | |||
seq2  TGGGAG-GCTTAGA-CAAGCAAAAGCCACCTGTATCGAACAGCAAG-TAT  47

seq1  ACTAGAGTTTTGGCATTTGTCCAGCCTTTCTGACACTAAAGACATGGCTG  100
       | |||   ||||||||||||||||||||| |||| | ||||||||||||
seq2  -CAAGA-AGTTGGCATTTGTCCAGCCTTTC-GACAAT-AAGACATGGCTG  93

seq1  GCAAGGTTGTCCAGCACAGCCAACCCGTGCGGAGGAGATTCACCCCTACG  150
      |||| |||||||||||||| |||||||||| ||||||| ||| |||||||
seq2  GCAA-GTTGTCCAGCACAG-CAACCCGTGC-GAGGAGA-TCA-CCCTACG  138

seq1  AGAACTGGGCTCCGGGGAGGCAGCTGCCCTCCAGAGTTACACTCAGCAGC  200
      |||||| |||||| |||| ||||||| |||||||||||||||||||||||
seq2  AGAACT-GGCTCC-GGGAAGCAGCTG-CCTCCAGAGTTACACTCAGCAGC  185

seq1  AGTGTGGTCACTTCAAGTTGCAGTTAGTGCAG-AGCAGAAGGTCATCTTG  249
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AGTGTGGTCACTTCAAGTTGCAGTTAGTGCAGAAGCAGAAGGTCATC-TG  234

seq1  CCAAGCTAAGCCAGGAAGTTCTCGAGAACTGAACCGAGGCACTGAACCGA  299
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAAGCT-AGCCAGGAAATTCTCGAGAACTGAACCGAGGCACTGAACCGA  283

seq1  CCCTCTGTGGCACACAGGTATGTTTTACTTCACACTTCCAATCTGATCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGGCACACAGGTATGTTTTACTTCACACTTCCAATCTGATCAG  333

seq1  AGAGGACTGCATGAAACACAGAAATGTGTATAAAAAAGCAGACGACAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTGCATGAAACACAGAAATGTGTATAAAAAAGCAGACGACAGTA  383

seq1  GGGCTTAATCTAGGCTTGGCTTGTATAAAACTGTATTAGCTGCTATAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAATCTAGGCTTGGCTTGTATAAAACTGTATTAGCTGCTATAATC  433

seq1  AAAATGTGAGAGATTAAAACTGATGATTACCATGTGGTTAAAGAAAAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAGAGATTAAAACTGATGATTACCATGTGGTTAAAGAAAAAGG  483

seq1  TTCTATATATCCAGGACTTTAAAATGTACAATTAGACAGAAGTACCTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATATCCAGGACTTTAAAATGTACAATTAGACAGAAGTACCTGAT  533

seq1  AAAATAACAGGGACGGAATGCATCCCAAACCAGCAGTGTAGGTAACCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACAGGGACGGAATGCATCCCAAACCAGCAGTGTAGGTAACCAAG  583

seq1  GGAAGCAATGGTCACCAACGAAGAATAGAGTCACTTAGAGAAGAGCTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAATGGTCACCAACGAAGAATAGAGTCACTTAGAGAAGAGCTTTC  633

seq1  CATCCTTGGTTCTTCCAAGGAGAGAGTGGCCTGCCTAGGGACCATAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGGTTCTTCCAAGGAGAGAGTGGCCTGCCTAGGGACCATAGAAA  683

seq1  CATCTCAGTGTGAACCTGGGGTTCTCATGTGGCACCCACACAAGCACAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGTGAACCTGGGGTTCTCATGTGGCACCCACACAAGCACAGG  733

seq1  AGCGGGGCACATCACGGGCATGGGCAGGGCAGGTAGGTCGAGGGGTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGGCACATCACGGGCATGGGCAGGGCAGGTAGGTCGAGGGGTTATG  783

seq1  AAATGTCCATTCAAACAGTAATGGGTCAGCCTATCATCTTCTTGGCCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCATTCAAACAGTAATGGGTCAGCCTATCATCTTCTTGGCCTGG  833

seq1  TGGGTAGCCAGTGATAGTTATCTATTGACCTTATTCTCAACGCAAAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCCAGTGATAGTTATCTATTGACCTTATTCTCAACGCAAAGGAG  883

seq1  ATGCTGGGGACAGGGCTCAGCAGTGACAGACATGGCCGGCACTGTCCCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGGACAGGGCTCAGCAGTGACAGACATGGCCGGCACTGTCCCAG  933

seq1  ACCTGGATGGATCAGTCAATACTTCCCACACTAGATCTAAGGTACTGACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATGGATCAGTCAATACTTCCCACACTAGATCTAAGGTACTGACA  983

seq1  CGGTTATGTCAAGGCTTTAAGTGGAATGCTTGCTGGAAGCCTTCTAGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATGTCAAGGCTTTAAGTGGAATGCTTGCTGGAAGCCTTCTAGCAG  1033

seq1  GGATGGATGGTGGCCCTGATTCTTACAGAGCAGCTTCATGGGACATGTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATGGTGGCCCTGATTCTTACAGAGCAGCTTCATGGGACATGTAT  1083

seq1  GCAAGCAGGCTCCTCAGAATGCTGAGAAGACTGGTCAGAGGCAGGGGGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGCTCCTCAGAATGCTGAGAAGACTGGTCAGAGGCAGGGGGTA  1133

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1139

seq1: chr17_50736173_50737268
seq2: B6Ng01-040H04.g_66_1152

seq1  GAATTCTTGTCTAGCTGCCAACATTGATCTAGTTATGGCAATCTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTAGCTGCCAACATTGATCTAGTTATGGCAATCTAAAAAT  50

seq1  CTAAAACAGAGCATGTTTGTTTGTTTGTTTTTGATTTTTAAATACCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGAGCATGTTTGTTTGTTTGTTTTTGATTTTTAAATACCTTCT  100

seq1  ACTTGAGATAAGACTAACCCACATAAAACAGTCAGAGCACTGAATCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATAAGACTAACCCACATAAAACAGTCAGAGCACTGAATCAGGC  150

seq1  ACTGAATCATTAAGTGTTGAATTACAGAGTAGAAGTGATAAATACCGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCATTAAGTGTTGAATTACAGAGTAGAAGTGATAAATACCGTAG  200

seq1  AGGCTATAGAGAAGAGATAATAGAACTGAGACTGGGCTACTGTTTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATAGAGAAGAGATAATAGAACTGAGACTGGGCTACTGTTTGGAAC  250

seq1  TTAAAAGAATATTTTACAGAGAGCTGAGTTTGTCTTTGATATGATTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATATTTTACAGAGAGCTGAGTTTGTCTTTGATATGATTCATT  300

seq1  ATTTTAGGTCTTTTTTTCTGATCTATTACCTTTACACATACAGAAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTCTTTTTTTCTGATCTATTACCTTTACACATACAGAAATTTC  350

seq1  TTATGAATGTTAACCATTGGATTTTAAAAGGCCTCCCAAAAGTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATGTTAACCATTGGATTTTAAAAGGCCTCCCAAAAGTTTTTTTT  400

seq1  TTTCCTGTAAGATTGAAAACTTAAATAATTGTGAGTTTATAATATAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTAAGATTGAAAACTTAAATAATTGTGAGTTTATAATATAGTTA  450

seq1  TGGGGCATTGTCTTAGTAACTTTCTGTCCTTGTGAAGGGACACCATAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATTGTCTTAGTAACTTTCTGTCCTTGTGAAGGGACACCATAATC  500

seq1  AAGGCAACTTACAAGAGAAAACCTTTAGTTGGGGGACTGCTTAGTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTTACAAGAGAAAACCTTTAGTTGGGGGACTGCTTAGTTTCAG  550

seq1  AGGGTGAGCCCATGACCATCATGGCAGGGAGCTGGCAGGCAGACATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGCCCATGACCATCATGGCAGGGAGCTGGCAGGCAGACATGGTG  600

seq1  GGTGCTGGAGGAGCATCTGCGCAGGAGGCGAGAAAGTGACAGTGGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAGGAGCATCTGCGCAGGAGGCGAGAAAGTGACAGTGGGTCTG  650

seq1  GTTTGGGCTTTGGAAACCTCGGAGCCCACCCCCAGTGACATACCTCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCTTTGGAAACCTCGGAGCCCACCCCCAGTGACATACCTCCTCC  700

seq1  AACCAGGACATGCCTTCTAATCCTTCTAACGGTTCCATCAATTGGACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGACATGCCTTCTAATCCTTCTAACGGTTCCATCAATTGGACACT  750

seq1  AAACATTCAAACATATGGGCCTGTGGGTGCCGTTCTCA-TTCAAATCATC  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAACATTCAAACATATGGGCCTGTGGGTGCCGTTCTCATTTCAAATCATC  800

seq1  ATAGGCAGCTTTCCTGAAAATTTAATTTTAAAAAATGTTGTAGATTCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGCTTTCCTGAAAATTTAATTTTAAAAAATGTTGTAGATTCATT  850

seq1  AAAATTTCTGATTCAAAGAGTTGCTGTTGGTCACTCACTGTGTTTGCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTGATTCAAAGAGTTGCTGTTGGTCACTCACTGTGTTTGCTCT  900

seq1  GTGTTTGATCTGGCCTAGGCATGAGCATTCCCCTTAACTGCTAACTACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGATCTGGCCTAGGCATGAGCATTCCCCTTAACTGCTAACTACTG  950

seq1  CTTTGCTATTCCATTTTCCTCAGCCCTGAGCAATGCAGTACTCAGGATGT  999
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CTTTGCTATTCCATTTTCCTCAGCCCTGAGC-ATGCAGTACTCA-GATGT  998

seq1  AAAAGAGAAGGAGACTAAATCATTCTTCTTAATTATCTTTGAAATAATGG  1049
      ||||||||  |||||||||||||||||||  ||||| |||| ||||||| 
seq2  AAAAGAGA--GAGACTAAATCATTCTTCT--ATTATTTTTG-AATAATGA  1043

seq1  AGAACCACCACAGCTTAGGGGAGAAAATGTAATGATGGAGTCAGTGC  1096
      || ||||||||||||||||||||||||||| ||||| ||||||||||
seq2  AG-ACCACCACAGCTTAGGGGAGAAAATGT-ATGAT-GAGTCAGTGC  1087