BAC Information

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BAC

Clone NameB6Ng01-043L08
Chromosome17 (Build37)
Map Location 63,117,646 - 63,234,310
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043L08.bB6Ng01-043L08.g
ACCDH869689DH869690
length1,0821,159
definitionDH869689|Mus musculus domesticus DNA, BAC clone: B6Ng01-043L08, 5' end.DH869690|Mus musculus domesticus DNA, BAC clone: B6Ng01-043L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,117,646 - 63,118,735)(63,233,127 - 63,234,310)
sequence
gaattcatgattctcctgtctcacactcagaagtgttgggatcacaagtg
tatcgatgctattggctacttccaacacatttcattggtcccgaattatc
catgtgagaactattctcaataaggttagaccatggaaagaaattaattg
acattatttgagccatactctccaaatttctgtcctaaatctctctatat
acccctatatatcctctattactgttagcatagctatcttttgtgtcctt
ttatgcgatgacttccttatagcccatgtccccaactgtcctacaaggtc
caaaagaacagtggccctatctgtgaggccacatcttgttcttcatctcc
agcactatgaatggtacatggaaggggctcagttaatattagttaagtaa
gaacggatgacaggagaaagatgaagggcagggagaagggatggtggaaa
atagatgaagggcaagcagaagggatgatagaaatagatgaagggcaggc
aaaagggatgatgggagaaagatacagggcaggcagcaaacccatcctgg
catgtagaaccataatatgcccctcaaaagcctaggctgttccatagcct
gtgctgacgttgatagaaaatcataggctgtggtgcctcagacaaaacaa
taaaaggtattttcttattatttcactagtgattactaactaaaaataac
agctttgtgttgatgttttcttgaatgtatataacacactttagttagat
ctacccctcatctaacttccttcactccctctctcctcctcttgtaattc
cccttctgctttcccagcatccctctgtacccccccctaggttgtacata
cccagaaaaatgtgctacacttgagcataaaaaccactcttgcatcgtca
catctatatactgaagtctgccaactgacatcagaagggcatggagttca
gttactggggcattctcctaattctgctgacactctctgagtgtggggct
gtctgaacaatagattttaaagaggatcttctattagtaagatagtgtga
tttttgtcccatgaccacagagaataacgacc
gaattccctccttcctaaagatacacataaccttttaaagggttcagaat
atttcctgcagaaatattctcatgtgcctttgtcacatgagtgcctatta
cagttaccatcaaaaaggctgggaaagaaatctatccttccacagcagag
agaaaaaaaaaaaaaaaaaaaaaaaaaaagcataccctgaacttgttcac
cagccagagggacagcagcattttaaatgaaaacccaaattgattttaat
agtaaaaatcttatcgtcttgtttctttaaggtgtatccctcctttcttg
acgttggaaatttggtgaaagaagcagaggagagcttaagcgaatagaat
agtctcaatttaaactcttataaattagtctatcagttggtcagtcatgc
agtctaacgataacggttgtaatttacgtctggtcactcaacatggacgt
tccttcaggataattagggaaaatctccatcacgtccagtaacgcccagc
ctgtgggaactgcttctttcctctcatgtcttcactcatcctgaccttag
attttccatcaggctcagcgtgggctgaggctgccgtcaatgcccctgct
gggtgcggactgcaggccgaccactggagggcgtctggacgcttccaaat
ttctccgaagcgcctggaaaccccaggccgagctttggaaaacgcaggat
ggagaatttgatatttaattttattcgtctaatatgtaaaagggaaaaga
cgcagtgttgagaggatggaaagaaaggtaaacggctttcttttttgggt
tcggccttcttaccaggctgtatacactaggagaacaaataaaaagtctg
ggatgcaggtctcagcagcatcgggttatggggctcgatgccagggcgca
ggaccacagggactcgtcccgaggcgccaggacttctcgctcccagagat
cctgcttagctggctcaaaggatctgggccctgcatcctcctgacagccc
aggaatgcacgcctttttcagcaataaagcgttttccctcctctcactat
tcttcccttttcttccaacgagttagtcaagaatattaaggggagggtgc
ggtggcgacgatccagcccagagaacgtgtaaagtgttaggtctgacgct
cgcgcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63117646_63118735
seq2: B6Ng01-043L08.b_45_1126

seq1  GAATTCATGATTCTCCTGTCTCACACTCAGAAGTGTTGGGATCACAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATTCTCCTGTCTCACACTCAGAAGTGTTGGGATCACAAGTG  50

seq1  TATCGATGCTATTGGCTACTTCCAACACATTTCATTGGTCCCGAATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGATGCTATTGGCTACTTCCAACACATTTCATTGGTCCCGAATTATC  100

seq1  CATGTGAGAACTATTCTCAATAAGGTTAGACCATGGAAAGAAATTAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGAACTATTCTCAATAAGGTTAGACCATGGAAAGAAATTAATTG  150

seq1  ACATTATTTGAGCCATACTCTCCAAATTTCTGTCCTAAATCTCTCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTGAGCCATACTCTCCAAATTTCTGTCCTAAATCTCTCTATAT  200

seq1  ACCCCTATATATCCTCTATTACTGTTAGCATAGCTATCTTTTGTGTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTATATATCCTCTATTACTGTTAGCATAGCTATCTTTTGTGTCCTT  250

seq1  TTATGCGATGACTTCCTTATAGCCCATGTCCCCAACTGTCCTACAAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCGATGACTTCCTTATAGCCCATGTCCCCAACTGTCCTACAAGGTC  300

seq1  CAAAAGAACAGTGGCCCTATCTGTGAGGCCACATCTTGTTCTTCATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACAGTGGCCCTATCTGTGAGGCCACATCTTGTTCTTCATCTCC  350

seq1  AGCACTATGAATGGTACATGGAAGGGGCTCAGTTAATATTAGTTAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATGAATGGTACATGGAAGGGGCTCAGTTAATATTAGTTAAGTAA  400

seq1  GAACGGATGACAGGAGAAAGATGAAGGGCAGGGAGAAGGGATGGTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGATGACAGGAGAAAGATGAAGGGCAGGGAGAAGGGATGGTGGAAA  450

seq1  ATAGATGAAGGGCAAGCAGAAGGGATGATAGAAATAGATGAAGGGCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAAGGGCAAGCAGAAGGGATGATAGAAATAGATGAAGGGCAGGC  500

seq1  AAAAGGGATGATGGGAGAAAGATACAGGGCAGGCAGCAAACCCATCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATGATGGGAGAAAGATACAGGGCAGGCAGCAAACCCATCCTGG  550

seq1  CATGTAGAACCATAATATGCCCCTCAAAAGCCTAGGCTGTTCCATAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAACCATAATATGCCCCTCAAAAGCCTAGGCTGTTCCATAGCCT  600

seq1  GTGCTGACGTTGATAGAAAATCATAGGCTGTGGTGCCTCAGACAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACGTTGATAGAAAATCATAGGCTGTGGTGCCTCAGACAAAACAA  650

seq1  TAAAAGGTATTTTCTTATTATTTCACTAGTGATTACTAACTAAAAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTATTTTCTTATTATTTCACTAGTGATTACTAACTAAAAATAAC  700

seq1  AGCTTTGTGTTGATGTTTTCTTGAATGTATATAACACACTTTAGTTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGTTGATGTTTTCTTGAATGTATATAACACACTTTAGTTAGAT  750

seq1  CTACCCCTCATCTAACTTCCTTCACTCCCTCTCTCCTCCTCTTGTAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTCATCTAACTTCCTTCACTCCCTCTCTCCTCCTCTTGTAATTC  800

seq1  CCCTTCTGCTTTCCCAGCATCCCTCTGTACCCCCCCCTAGGTTGTACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCTTTCCCAGCATCCCTCTGTACCCCCCCCTAGGTTGTACATA  850

seq1  CCCAGAAAAATGTGCTACACTTGAGCATAAAAACCACTCTTGCATCGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAAATGTGCTACACTTGAGCATAAAAACCACTCTTGCATCGTCA  900

seq1  CATCTATATACTGAAGTCTGCCAACTGACATCAGAAGGGCATGGAGTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATATACTGAAGTCTGCCAACTGACATCAGAAGGGCATGGAGTTCA  950

seq1  GGTTACTGGGGCATTCTCCTAATTCTGCTGACACTCCTCTGAGTGTGGGG  1000
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -GTTACTGGGGCATTCTCCTAATTCTGCTGACACT-CTCTGAGTGTGGGG  998

seq1  CTGTCTGAACAATAGGATTTTTAAAAGAGATTCTTCCTATTTAGTAAGAT  1050
      |||||||||||||| ||||||  ||||||  |||| ||| ||||||||||
seq2  CTGTCTGAACAATA-GATTTT--AAAGAGGATCTT-CTA-TTAGTAAGAT  1043

seq1  AAGTGTGATTTTTGTCCCATGACCACAGAGATATACGACC  1090
       ||||||||||||||||||||||||||||||   ||||||
seq2  -AGTGTGATTTTTGTCCCATGACCACAGAGAATAACGACC  1082

seq1: chr17_63233127_63234310
seq2: B6Ng01-043L08.g_68_1226 (reverse)

seq1  GCAGCGCGCGAGCCCGTCAGTACTTTACACCTTTTCCACGCGGATCCTGG  50
      |||| |||||||  |||||| || | ||||  ||| |||   | ||   |
seq2  GCAG-GCGCGAG--CGTCAG-ACCTAACAC--TTTACAC---GTTCTCTG  41

seq1  GGCTGGTTCGCTACGCACACGCACACCCCACATAAATATCTTGAACTAAA  100
      |||||| |||   |||   ||||| | || | |||   ||||| ||| ||
seq2  GGCTGGATCG--TCGCCACCGCACCCTCCCCTTAATATTCTTG-ACT-AA  87

seq1  CTCGGTTTGAGAAGAAAAGGGAGGGAAATAGTGAGAGGGAGGGAAAACGC  150
      ||||  ||| |||||||||||| |  |||||||||| |||||||||||| 
seq2  CTCG--TTG-GAAGAAAAGGGAAG--AATAGTGAGA-GGAGGGAAAACG-  130

seq1  CTTTATTGCTGAAAAAAGGCCGTGCATTCCTGGGCTGGTCAGGAGGTTGC  200
      ||||||||||||||||  | |||||||||||||||| ||||||||| |||
seq2  CTTTATTGCTGAAAAA--GGCGTGCATTCCTGGGCT-GTCAGGAGGATGC  177

seq1  AGGGCCCAGATCCTTTGAGGCCAGCTAAGCCGGATCTCCTGGGAGCGAGG  250
      |||||||||||||||||| ||||||||||| |||||| ||||||||||| 
seq2  AGGGCCCAGATCCTTTGA-GCCAGCTAAGCAGGATCT-CTGGGAGCGAGA  225

seq1  AGTCCTGGCGCCTCGGGACGGGTCCCCTGTGGTCCTGCGCCCTGGCATCG  300
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  AGTCCTGGCGCCTCGGGACGAGT-CCCTGTGGTCCTGCGCCCTGGCATCG  274

seq1  AGCCCCAT-ACCCGATGCTGCTGAGACCTGCATCCCAGACTTTTTATTTT  349
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCCCATAACCCGATGCTGCTGAGACCTGCATCCCAGACTTTTTA-TTT  323

seq1  GTTCT-CTAGTGTATACAGCCTGGTAAGAAGGCCGAACCCAAAAAAGAAA  398
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTAGTGTATACAGCCTGGTAAGAAGGCCGAACCCAAAAAAGAAA  373

seq1  GCCGTTTACCTTTCTTTCCATCCTCTCAACACTGCGTCTTTTCCCTTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTTACCTTTCTTTCCATCCTCTCAACACTGCGTCTTTTCCCTTTTA  423

seq1  CATATTAGACGAATAAAATTAAATATCAAATTCTCCATCCTGCGTTTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAGACGAATAAAATTAAATATCAAATTCTCCATCCTGCGTTTTCC  473

seq1  AAAGCTCGGCCTGGGGTTTCCAGGCGCTTCGGAGAAATTTGGAAGCGTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCGGCCTGGGGTTTCCAGGCGCTTCGGAGAAATTTGGAAGCGTCC  523

seq1  AGACGCCCTCCAGTGGTCGGCCTGCAGTCCGCACCCAGCAGGGGCATTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCCCTCCAGTGGTCGGCCTGCAGTCCGCACCCAGCAGGGGCATTGA  573

seq1  CGGCAGCCTCAGCCCACGCTGAGCCTGATGGAAAATCTAAGGTCAGGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCCTCAGCCCACGCTGAGCCTGATGGAAAATCTAAGGTCAGGATG  623

seq1  AGTGAAGACATGAGAGGAAAGAAGCAGTTCCCACAGGCTGGGCGTTACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGACATGAGAGGAAAGAAGCAGTTCCCACAGGCTGGGCGTTACTG  673

seq1  GACGTGATGGAGATTTTCCCTAATTATCCTGAAGGAACGTCCATGTTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGATGGAGATTTTCCCTAATTATCCTGAAGGAACGTCCATGTTGAG  723

seq1  TGACCAGACGTAAATTACAACCGTTATCGTTAGACTGCATGACTGACCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGACGTAAATTACAACCGTTATCGTTAGACTGCATGACTGACCAA  773

seq1  CTGATAGACTAATTTATAAGAGTTTAAATTGAGACTATTCTATTCGCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGACTAATTTATAAGAGTTTAAATTGAGACTATTCTATTCGCTTA  823

seq1  AGCTCTCCTCTGCTTCTTTCACCAAATTTCCAACGTCAAGAAAGGAGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTCTGCTTCTTTCACCAAATTTCCAACGTCAAGAAAGGAGGGA  873

seq1  TACACCTTAAAGAAACAAGACGATAAGATTTTTACTATTAAAATCAATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTAAAGAAACAAGACGATAAGATTTTTACTATTAAAATCAATTT  923

seq1  GGGTTTTCATTTAAAATGCTGCTGTCCCTCTGGCTGGTGAACAAGTTCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCATTTAAAATGCTGCTGTCCCTCTGGCTGGTGAACAAGTTCAG  973

seq1  GGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTGCTGTGGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTGCTGTGGAAG  1023

seq1  GATAGATTTCTTTCCCAGCCTTTTTGATGGTAACTGTAATAGGCACTCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTTCTTTCCCAGCCTTTTTGATGGTAACTGTAATAGGCACTCAT  1073

seq1  GTGACAAAGGCACATGAGAATATTTCTGCAGGAAATATTCTGAACCCTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAGGCACATGAGAATATTTCTGCAGGAAATATTCTGAACCCTTT  1123

seq1  AAAAGGTTATGTGTATCTTTAGGAAGGAGGGAATTC  1184
      ||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTATGTGTATCTTTAGGAAGGAGGGAATTC  1159