BAC Information

Click to search

BAC

Clone NameB6Ng01-043M19
Chromosome17 (Build37)
Map Location 82,984,739 - 82,985,891
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043M19.bB6Ng01-043M19.g
ACCDH869751DH869752
length1,1571,153
definitionDH869751|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M19, 5' end.DH869752|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcccaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaagtacccaaggagctaaaggatcttcacccttata
ggtggaacaacattatgactaaccagtaccctgagctcttgactctagct
gcatatgtatcaagatggcctagtcggcatcactgaaagaaagtccattg
gaacgcaaactttggtgccccgtacaggacgccagggccaaaagggtatg
gttgtat
gaattcaataataaacaatgactcttctgcaacagcaaaaacaaaacaaa
acaaaacaacagagtccctagcacaagcagggagcaaatgggaccaaaac
acagggaacagaagtatgaaaacaccataacaaaatccattgctgtggaa
ttacgtagaaataatatatgccaataaaaataaatagccgagataaaaaa
agaaacaaatgagactagaatagaacacatttgcatatatttaaaagcta
aaacagtaaatattgctttgtgaaacttttgttccaatcattgaaatatt
catcacacacagtggctcatttgtttctttctgtgggttatagttgatat
gtttgaaagcaaccacagtagaataatgacctataaagaaatgaagctat
tggtcttgttcaaattctacccagaacattaagatgctgctgtgggaagt
tgcctcatcaagctatgtcaaattcatgtgggaaataaacagaggagaag
gaaatatgcaattaatgaagtttttcatttaggtaacatttgttgaggaa
tgacagaatcaggtatacattgtagttactgagaaattttgaagagagaa
aaaaatcttttttaattcccttcacatgtacacattttggagagggatgg
tttctgaattttttttaataaagaaagtatctatatgactagtaaaattt
gcaacacatttacatttaatggttgatacctgaattaatgtagttagtaa
gaggtagactcattagtgtaattcttcagtaattgcttatattgagatgc
gaaaggctgaagccttagagggaatttaatgttacatttccatgattacc
ttctgctgaattagctatttctcacttttatttacatgggccgttccctt
gagatgagacgggtagtgaggcataaagacagatattgcaccaggccttt
ggagctgcttatgccgaatataaaactaaacctagggctttgtagtttgc
agtattagcatcctcggttggaaaattcctttgttgtgacctgcctgcat
actggggagttctgggcatcatttatgtctttttttctcaggatgcctat
gcccggtttgtgcttcaagtgaagaacaaagctcctgcaggtgtgcatgc
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82984739_82985891
seq2: B6Ng01-043M19.g_66_1218 (reverse)

seq1  GAAGCATGCACACATGCAGGAGCTTTGCTCCTCAACTAGAAGCACAAACC  50
      ||||||||||||| ||||||||||||| || || ||| ||||||||||||
seq2  GAAGCATGCACACCTGCAGGAGCTTTGTTCTTC-ACTTGAAGCACAAACC  49

seq1  GG--CTAGGCATCCCTGAG--AAAAAGACATAAATGATGCCCAGAACTCC  96
      ||   ||||||| ||||||  |||||||||||||||||||||||||||||
seq2  GGGCATAGGCAT-CCTGAGAAAAAAAGACATAAATGATGCCCAGAACTCC  98

seq1  CCAGTATGCAGGCCAGGTTCACAACAAA-GAATTATCCAACCGAGAATGC  145
      |||||||||||| |||| |||||||||| ||||| |||||||||| ||||
seq2  CCAGTATGCAGG-CAGG-TCACAACAAAGGAATTTTCCAACCGAGGATGC  146

seq1  TAATACTGCAAAACTACAAAGCCCTAGGTTTAGTTTTATATTTCGGCATA  195
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TAATACTGC-AAACTACAAAGCCCTAGGTTTAGTTTTATA-TTCGGCATA  194

seq1  AGCAGCTCCAAAGGCCTGGTGCAATATCTGTCTTTATGCCTCACTACCCG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCCAAAGGCCTGGTGCAATATCTGTCTTTATGCCTCACTACCCG  244

seq1  TCTCATCTCAAGGGAACGG-CCATGTAAATAAAAGTGAGAAATAGCTAAT  294
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTCATCTCAAGGGAACGGCCCATGTAAATAAAAGTGAGAAATAGCTAAT  294

seq1  TCAGCAGAAGGTAATCATGGAAATGTAACATTAAATTCCCTCTAAGGCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAAGGTAATCATGGAAATGTAACATTAAATTCCCTCTAAGGCTT  344

seq1  CAGCCTTTCGCATCTCAATATAAGCAATTACTGAAGAATTACACTAATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTCGCATCTCAATATAAGCAATTACTGAAGAATTACACTAATGA  394

seq1  GTCTACCTCTTACTAACTACATTAATTCAGGTATCAACCATTAAATGTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCTCTTACTAACTACATTAATTCAGGTATCAACCATTAAATGTAA  444

seq1  ATGTGTTGCAAATTTTACTAGTCATATAGATACTTTCTTTATTAAAAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGCAAATTTTACTAGTCATATAGATACTTTCTTTATTAAAAAAA  494

seq1  ATTCAGAAACCATCCCTCTCCAAAATGTGTACATGTGAAGGGAATTAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAACCATCCCTCTCCAAAATGTGTACATGTGAAGGGAATTAAAA  544

seq1  AAGATTTTTTTCTCTCTTCAAAATTTCTCAGTAACTACAATGTATACCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTCTCTCTTCAAAATTTCTCAGTAACTACAATGTATACCTG  594

seq1  ATTCTGTCATTCCTCAACAAATGTTACCTAAATGAAAAACTTCATTAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCATTCCTCAACAAATGTTACCTAAATGAAAAACTTCATTAATT  644

seq1  GCATATTTCCTTCTCCTCTGTTTATTTCCCACATGAATTTGACATAGCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTCCTTCTCCTCTGTTTATTTCCCACATGAATTTGACATAGCTT  694

seq1  GATGAGGCAACTTCCCACAGCAGCATCTTAATGTTCTGGGTAGAATTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCAACTTCCCACAGCAGCATCTTAATGTTCTGGGTAGAATTTGA  744

seq1  ACAAGACCAATAGCTTCATTTCTTTATAGGTCATTATTCTACTGTGGTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCAATAGCTTCATTTCTTTATAGGTCATTATTCTACTGTGGTTG  794

seq1  CTTTCAAACATATCAACTATAACCCACAGAAAGAAACAAATGAGCCACTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACATATCAACTATAACCCACAGAAAGAAACAAATGAGCCACTG  844

seq1  TGTGTGATGAATATTTCAATGATTGGAACAAAAGTTTCACAAAGCAATAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATGAATATTTCAATGATTGGAACAAAAGTTTCACAAAGCAATAT  894

seq1  TTACTGTTTTAGCTTTTAAATATATGCAAATGTGTTCTATTCTAGTCTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTTTAGCTTTTAAATATATGCAAATGTGTTCTATTCTAGTCTCA  944

seq1  TTTGTTTCTTTTTTTATCTCGGCTATTTATTTTTATTGGCATATATTATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTTTTTATCTCGGCTATTTATTTTTATTGGCATATATTATT  994

seq1  TCTACGTAATTCCACAGCAATGGATTTTGTTATGGTGTTTTCATACTTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTAATTCCACAGCAATGGATTTTGTTATGGTGTTTTCATACTTCT  1044

seq1  GTTCCCTGTGTTTTGGTCCCATTTGCTCCCTGCTTGTGCTAGGGACTCTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGTGTTTTGGTCCCATTTGCTCCCTGCTTGTGCTAGGGACTCTG  1094

seq1  TTGTTTTGTTTTGTTTTGTTTTTGCTGTTGCAGAAGAGTCATTGTTTATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTTGCTGTTGCAGAAGAGTCATTGTTTATT  1144

seq1  ATTGAATTC  1153
      |||||||||
seq2  ATTGAATTC  1153