BAC Information

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BAC

Clone NameB6Ng01-044I11
Chromosome17 (Build37)
Map Location 62,430,531 - 62,565,520
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I11.bB6Ng01-044I11.g
ACCDH870254DH870255
length1,1871,033
definitionDH870254|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I11, 5' end.DH870255|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,430,531 - 62,431,723)(62,564,482 - 62,565,520)
sequence
gaattccactttgttctaagaacttggggagatatgtgtagtagggatga
ggaaacctgcatgctctgacagtgccaggaggcatggatgtttgagtcct
gcagacatggtaaaacaaatagacaccctaaatgaatcatttagcaatta
catcattgtctcagcactactcaggttctaagtaagtgggtcttgtcttt
gtctactcagttttcagaatcaaaagccatgggttagatagcatatgacc
aatgacatttcttggctcacagctttgcagtgacaagtcaactgtaggat
atctatgtaaaagtttgtgatgaggggcttcatgctagatctctgatttg
tgtctgtttctttgcaacctaaaagtcaagtctttgtctcctctgttctt
tttccttgaatgcatttttgggacatatatctgtgagacagggtattatt
acataactcagtaggcctgtaattcactatgtagtgtaggctggcctgga
aattacctatcattttccctcagtttcccaagtgacaagattcatgtcag
cagtcctgagggtctcattcaaccttagttacttcctggagtccccagca
tgcaatgcagtggcatcaggatctaggtcttcagtacatgaaatgggaca
caacacaatgaacatggtcattgccattgtactaatttcaattgcaaaaa
tccaagccaaaaaaaaaaccaaaaaacaaaaaaaccaaaacctaagataa
gacaaagtcagaatcttctcacagaccaagatctaaactggtattttttc
caccgactttgagatattctattactacaacacagaccggacagctgtag
attcttgggaaaatgtgacctcttattctatccctgcttaatgtaaactt
gttcagataaatgaactagtgcttgacccgactttaagtgagatttatat
tggtcttcaaatgatccatcctggggaaattctgaaatcttaaactcatc
ctattttccacatttaatttcctccccgtgtatctgagtgtcactaaaat
tggtccttcaacctgatgtccctcctcatgcatggccactctccacctaa
cagaaaggttcacctcaggtgaaggctctctccaacttggcttcatttcc
ggtctattggcattaaacatagcattccattcgctgc
gaattcaaagagcagatgaagaatgttcaaattaatagtaattgaatgtt
atttacacccggtgagctatttcaatatttaattaattaaatattaatta
aacattttatatttaataacagggtgagttattttataaaatagtgaatt
ctgtacctgaaagatgaatgatttcctttcaaaatgtgaatggttccttc
ttcagaattctttggcaaggagtctgggtgaggggtgtaggcagacttca
ttattcctaagtttctatgggacttcgtgattcagccctgcaatattcac
ttgtgcaatttctattgacctcagctggaatttattgattgtttattagc
aaagacaaaggctgacttatgtcagctagttctctatagtatctcccatc
ttggtttgtcgtaaatttttataatttgtactttgagaataattcctgtg
gcttaagaaaggcatcgatcccatgaaacacttaacattttcttagtcat
atctctggcccacatttgctctcaaaacagttctatcaatcatttgttcc
ataatgtgaaataatatcaatttgttcccttaggattattttggactctt
attttagaacaaaaacttacatatctactaatgggtgtatgatatatgta
tgtgtatgtgcgtgtgtgcaaatgggtgcaggtgtacacatgtagaccca
aagttgatatttagatctcccctagtgatttttcacgttaacttttggaa
cacagttttcttaactgcaccacgagattcctacttggcaaggttcactg
gccagtgaggttcagagatttcccatcaattcctaatccggtctaagatt
actgctgtgtgcttccttgcctcaatgtgtgcattagagctaggaatgtg
acgccaggcctcatgatgtacacaggcactttactgactgagccgtctct
ccagcccctttatttctactaaagcagctctggtgtatggacagcttgaa
gatgttattgaaacagtagaataaaaactatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62430531_62431723
seq2: B6Ng01-044I11.b_47_1233

seq1  GAATTCCACTTTGTTCTAAGAACTTGGGGAGATATGTGTAGTAGGGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTGTTCTAAGAACTTGGGGAGATATGTGTAGTAGGGATGA  50

seq1  GGAAACCTGCATGCTCTGACAGTGCCAGGAGGCATGGATGTTTGAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGCATGCTCTGACAGTGCCAGGAGGCATGGATGTTTGAGTCCT  100

seq1  GCAGACATGGTAAAACAAATAGACACCCTAAATGAATCATTTAGCAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATGGTAAAACAAATAGACACCCTAAATGAATCATTTAGCAATTA  150

seq1  CATCATTGTCTCAGCACTACTCAGGTTCTAAGTAAGTGGGTCTTGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGTCTCAGCACTACTCAGGTTCTAAGTAAGTGGGTCTTGTCTTT  200

seq1  GTCTACTCAGTTTTCAGAATCAAAAGCCATGGGTTAGATAGCATATGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTCAGTTTTCAGAATCAAAAGCCATGGGTTAGATAGCATATGACC  250

seq1  AATGACATTTCTTGGCTCACAGCTTTGCAGTGACAAGTCAACTGTAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTTCTTGGCTCACAGCTTTGCAGTGACAAGTCAACTGTAGGAT  300

seq1  ATCTATGTAAAAGTTTGTGATGAGGGGCTTCATGCTAGATCTCTGATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTAAAAGTTTGTGATGAGGGGCTTCATGCTAGATCTCTGATTTG  350

seq1  TGTCTGTTTCTTTGCAACCTAAAAGTCAAGTCTTTGTCTCCTCTGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTCTTTGCAACCTAAAAGTCAAGTCTTTGTCTCCTCTGTTCTT  400

seq1  TTTCCTTGAATGCATTTTTGGGACATATATCTGTGAGACAGGGTATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAATGCATTTTTGGGACATATATCTGTGAGACAGGGTATTATT  450

seq1  ACATAACTCAGTAGGCCTGTAATTCACTATGTAGTGTAGGCTGGCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTCAGTAGGCCTGTAATTCACTATGTAGTGTAGGCTGGCCTGGA  500

seq1  AATTACCTATCATTTTCCCTCAGTTTCCCAAGTGACAAGATTCATGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTATCATTTTCCCTCAGTTTCCCAAGTGACAAGATTCATGTCAG  550

seq1  CAGTCCTGAGGGTCTCATTCAACCTTAGTTACTTCCTGGAGTCCCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGAGGGTCTCATTCAACCTTAGTTACTTCCTGGAGTCCCCAGCA  600

seq1  TGCAATGCAGTGGCATCAGGATCTAGGTCTTCAGTACATGAAATGGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGCAGTGGCATCAGGATCTAGGTCTTCAGTACATGAAATGGGACA  650

seq1  CAACACAATGAACATGGTCATTGCCATTGTACTAATTTCAATTGCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAATGAACATGGTCATTGCCATTGTACTAATTTCAATTGCAAAAA  700

seq1  TCCAAGCCAAAAAAAAAACCAAAAAACAAAAAAACCAAAACCTAAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCAAAAAAAAAACCAAAAAACAAAAAAACCAAAACCTAAGATAA  750

seq1  GACAAAGTCAGAATCTTCTCACAGACCAAGATCTAAACTGGTATTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTCAGAATCTTCTCACAGACCAAGATCTAAACTGGTATTTTTTC  800

seq1  CACCGACTTTGAGATATTCTATTTACTACAACACAGACCGGACAGCTGTA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACCGACTTTGAGATATTCTA-TTACTACAACACAGACCGGACAGCTGTA  849

seq1  GATTC-TGGGAAAATGTGACCTCTTATTCTATCCCTGCTTAATGTAAACT  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGGGAAAATGTGACCTCTTATTCTATCCCTGCTTAATGTAAACT  899

seq1  TGTTCAGATAAATGAACTAGTGCTTGACCCGACTTTAAGTGAGATTTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGATAAATGAACTAGTGCTTGACCCGACTTTAAGTGAGATTTATA  949

seq1  TTGGTCTTCAAATGATCCATCCT-GGGAAATTCTGAACATCTTAAACTCA  998
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TTGGTCTTCAAATGATCCATCCTGGGGAAATTCTGAA-ATCTTAAACTCA  998

seq1  TCCTATTTTCCACATTTTAATTTCCTCACTGTGTATCTGAGTG-CACTAA  1047
      |||||||||||||| |||||||||||| | ||||||||||||| ||||||
seq2  TCCTATTTTCCACA-TTTAATTTCCTCCCCGTGTATCTGAGTGTCACTAA  1047

seq1  AATCTGTCCCTCCAACCTGATGGCCCCTCCTCATGCATGG-CACTCTCAC  1096
      ||| ||  ||| ||||||||| | |||||||||||||||| |||||||  
seq2  AAT-TGGTCCTTCAACCTGAT-GTCCCTCCTCATGCATGGCCACTCTCCA  1095

seq1  ACTAACAG-GATGTTCACTTCAGTGTG-AGGCTCTCTCCATATCTTGCTT  1144
       |||||||  | |||||| |||| ||| |||||||||||  | ||||  |
seq2  CCTAACAGAAAGGTTCACCTCAG-GTGAAGGCTCTCTCC--AACTTGGCT  1142

seq1  TCATTTCCTGTTCTATTTGCTATAAACATAGCTATTTCCATTCTGCTGC  1193
      |||||||| | |||||| ||  ||||||||||   |||||||| |||||
seq2  TCATTTCC-GGTCTATTGGCATTAAACATAGC--ATTCCATTC-GCTGC  1187

seq1: chr17_62564482_62565520
seq2: B6Ng01-044I11.g_67_1099 (reverse)

seq1  ATATAGTATTTTATTCTTACTGTTTCAATAACATC-TCCAGCTGTCCATA  49
      ||||||| |||||||| |||||||||||||||||| || |||||||||| 
seq2  ATATAGT-TTTTATTC-TACTGTTTCAATAACATCTTCAAGCTGTCCAT-  47

seq1  ACACCAGAGACTGCTTTAGTAAGAAATAAAGGGGCTGGAGAGACGGCTCA  99
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  ACACCAGAG-CTGCTTTAGT-AGAAATAAAGGGGCTGGAGAGACGGCTCA  95

seq1  GTCAGTAAAGTGCCTGGTGTACAATCATGAGGCCTTGGCGTCACATTCCT  149
      ||||||||||||||| |||||| ||||||||||| |||||||||||||||
seq2  GTCAGTAAAGTGCCT-GTGTAC-ATCATGAGGCC-TGGCGTCACATTCCT  142

seq1  AGCTCTAATGCACACATTGAGGCAAGGAAGCACACAGCAGTAATCCTAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCTCTAATGCACACATTGAGGCAAGGAAGCACACAGCAGTAATCTTAGA  192

seq1  CCGGATTAGGAATTGATGGGAAATCTCTGAACCTCACTGGCCAGTGAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATTAGGAATTGATGGGAAATCTCTGAACCTCACTGGCCAGTGAACC  242

seq1  TTGCCAAGTAGGAAATCTCGTGGTGCAGTTAAG-AAACTGTGTTCCAAAA  298
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TTGCCAAGTAGG-AATCTCGTGGTGCAGTTAAGAAAACTGTGTTCCAAAA  291

seq1  GTTAACGTG-AAAATCACTAGGGGAGATCTAAATATCAACTTTGGGTCTA  347
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACGTGAAAAATCACTAGGGGAGATCTAAATATCAACTTTGGGTCTA  341

seq1  CATGTGTACACCTGCACCCATTTGCACACACGCACATACACATACATATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACACCTGCACCCATTTGCACACACGCACATACACATACATATA  391

seq1  TCATACACCCATTAGTAGATATGTAAGTTTTTGTTCTAAAATAAGAGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACCCATTAGTAGATATGTAAGTTTTTGTTCTAAAATAAGAGTCC  441

seq1  AAAATAATCCTAAGGGAACAAATTGATATTATTTCACATTATGGAACAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCCTAAGGGAACAAATTGATATTATTTCACATTATGGAACAAA  491

seq1  TGATTGATAGAACTGTTTTGAGAGCAAATGTGGGCCAGAGATATGACTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATAGAACTGTTTTGAGAGCAAATGTGGGCCAGAGATATGACTAA  541

seq1  GAAAATGTTAAGTGTTTCATGGGATCGATGCCTTTCTTAAGCCACAGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTAAGTGTTTCATGGGATCGATGCCTTTCTTAAGCCACAGGAA  591

seq1  TTATTCTCAAAGTACAAATTATAAAAATTTACGACAAACCAAGATGGGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCAAAGTACAAATTATAAAAATTTACGACAAACCAAGATGGGAG  641

seq1  ATACTATAGAGAACTAGCTGACATAAGTCAGCCTTTGTCTTTGCTAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATAGAGAACTAGCTGACATAAGTCAGCCTTTGTCTTTGCTAATAA  691

seq1  ACAATCAATAAATTCCAGCTGAGGTCAATAGAAATTGCACAAGTGAATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAATAAATTCCAGCTGAGGTCAATAGAAATTGCACAAGTGAATAT  741

seq1  TGCAGGGCTGAATCACGAAGTCCCATAGAAACTTAGGAATAATGAAGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCTGAATCACGAAGTCCCATAGAAACTTAGGAATAATGAAGTCT  791

seq1  GCCTACACCCCTCACCCAGACTCCTTGCCAAAGAATTCTGAAGAAGGAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACACCCCTCACCCAGACTCCTTGCCAAAGAATTCTGAAGAAGGAAC  841

seq1  CATTCACATTTTGAAAGGAAATCATTCATCTTTCAGGTACAGAATTCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATTTTGAAAGGAAATCATTCATCTTTCAGGTACAGAATTCACT  891

seq1  ATTTTATAAAATAACTCACCCTGTTATTAAATATAAAATGTTTAATTAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAAATAACTCACCCTGTTATTAAATATAAAATGTTTAATTAAT  941

seq1  ATTTAATTAATTAAATATTGAAATAGCTCACCGGGTGTAAATAACATTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTAATTAAATATTGAAATAGCTCACCGGGTGTAAATAACATTCA  991

seq1  ATTACTATTAATTTGAACATTCTTCATCTGCTCTTTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATTAATTTGAACATTCTTCATCTGCTCTTTGAATTC  1033