BAC Information

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BAC

Clone NameB6Ng01-044L04
Chromosome17 (Build37)
Map Location 55,233,045 - 55,370,655
singlet/doubletdoublet
Overlap geneLOC100043833
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178
Downstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L04.bB6Ng01-044L04.g
ACCDH870376DH870377
length7161,241
definitionDH870376|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L04, 5' end.DH870377|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,369,939 - 55,370,655)(55,233,045 - 55,234,306)
sequence
gaattctttcttgtacactagtctcttgaaccctcttaatgtatataata
aaaatcagatttcttgcctgctaattctaatgtaagaatgtttataatct
gaggctccctgctgtgtagattttctatgtgagtggtaaagtttgggggg
gggggcatgacacactttgcaatgtctgaaggacttattcattagcagaa
gcaggacacagtggttaggtcctttcacagtgtggttctggttaccctga
gacatcaggaggtcagagaagcattttaagatgctgcaataagtatgagg
gtaaatacatacttgatctaggaggtggttgtgatgtgtgtggggtatta
aactaatcacactgcaggagcaattaacatttggcaccatcagcaagctc
agcacactgaccttaggtcataaagctttaaaaaacccaggcaagagaaa
agggttggtgatattttatgtttccagatttccttgtcaatatacatgtt
ctgcataagtgtgcaccttgtctattttagtctatgctcataggaaggcc
tgtattcactatcttatttgaaaataacgtcctgttccttcattcatttg
acaaaccatttatatctttgctgcctcatatcctactttatttttattat
atttcctcattgtattctttttaatttgatattatcatataaataaattt
tccgtttctctctcca
gaattctcataccatgaaagacaaagaacccacactagttattgctaaga
ttgcatagattcaaataactacagactaaatgaaaatttgatgattaaat
attaggagttgtgtgcatacacatgtagcactggcataaactattcagaa
ccagcatgttggaacacacaagagaaaaacaaacaaacaaaacaataaca
aacaaaaaacagatttgaaaataaggatacctatatctgattttttaaaa
tataatttttatttatttatttatttatttatttatttatttttaccttt
ttcctgttattactcagcagcacagcaaaaacttaagcagaaccttggag
ctgaaacccagagaaattgtatagtgaataaaaatagttaatgtgtagcc
aaagggcacttacatagccagccttttgaaaaggacattaaacagacacc
aaatctccacatcagcattgacagggacagatgtgaattcctgtctcatt
cctgcccaggagtctcaaagccttcaagcttgcaaatctcttaaaacttg
caaatgaggtactagccctactgagagaaagagagcctccactgttccaa
agaaggagtgttgaaaattttaaatgtataggattcaccagttaagagca
cttggtagagcctccaggttgcttataaaaattggctagaaagaaatcca
tttttatttaaaatatcagtttaggataaaaccattctccaacctgcgac
attttcaacatttaacactcaatagtaaccatgaccttttctttgtgaag
ttacacagagaccatattcattaatcatttcttttcagaagggtgaattc
attaggttttaaagcagatatagattcctagctgttagtcatgattagtt
gcttataagggtgtgggggtaattagtacctcattagcaccacttttttt
tgttaaaatactaacagcactactgatacagcatatatgaccactaatgc
tctgaaaagactaagtcatgctagtaaattacattaatttttacttgtca
tttcatgcataattattgaggctaagagaattttgtcagtatctttttct
tgttaataaaagccaagaatacttgagggctgtattcttagctttatcaa
cagaacctgtaagcctttttctctctggaccctattatacaagaatgctc
aagaacctctgcgtggggcaatctcctttggagagacaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55369939_55370655
seq2: B6Ng01-044L04.b_44_759 (reverse)

seq1  TGGAGAGAGAAAAGGAAAATTTAATTATATGATAATATCAAATTAAAAAG  50
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TGGAGAGAGAAACGGAAAATTTATTTATATGATAATATCAAATTAAAAAG  50

seq1  AATACAATTGAGGAAATATAATAAAAATAAAGTAGGATATGAGGCAGCAA  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAA-TGAGGAAATATAATAAAAATAAAGTAGGATATGAGGCAGCAA  99

seq1  AGATATAAATGGTTTGTCAAATGAATGAAGGAACAGGACGTTATTTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAATGGTTTGTCAAATGAATGAAGGAACAGGACGTTATTTTCAA  149

seq1  ATAAGATAGTGAATACAGGCCTTCCTATGAGCATAGACTAAAATAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAGTGAATACAGGCCTTCCTATGAGCATAGACTAAAATAGACAA  199

seq1  GGTGCACACTTATGCAGAACATGTATATTGACAAGGAAATCTGGAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACACTTATGCAGAACATGTATATTGACAAGGAAATCTGGAAACAT  249

seq1  AAAATATCACCAACCCTTTTCTCTTGCCTGGGTTTTTTAAAGCTTTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCACCAACCCTTTTCTCTTGCCTGGGTTTTTTAAAGCTTTATGA  299

seq1  CCTAAGGTCAGTGTGCTGAGCTTGCTGATGGTGCCAAATGTTAATTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTCAGTGTGCTGAGCTTGCTGATGGTGCCAAATGTTAATTGCTC  349

seq1  CTGCAGTGTGATTAGTTTAATACCCCACACACATCACAACCACCTCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGTGATTAGTTTAATACCCCACACACATCACAACCACCTCCTAG  399

seq1  ATCAAGTATGTATTTACCCTCATACTTATTGCAGCATCTTAAAATGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTATGTATTTACCCTCATACTTATTGCAGCATCTTAAAATGCTTC  449

seq1  TCTGACCTCCTGATGTCTCAGGGTAACCAGAACCACACTGTGAAAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCCTGATGTCTCAGGGTAACCAGAACCACACTGTGAAAGGACC  499

seq1  TAACCACTGTGTCCTGCTTCTGCTAATGAATAAGTCCTTCAGACATTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGTGTCCTGCTTCTGCTAATGAATAAGTCCTTCAGACATTGCA  549

seq1  AAGTGTGTCATGCCCCCCCCCCCAAACTTTACCACTCACATAGAAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTCATGCCCCCCCCCCCAAACTTTACCACTCACATAGAAAATCT  599

seq1  ACACAGCAGGGAGCCTCAGATTATAAACATTCTTACATTAGAATTAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGGGAGCCTCAGATTATAAACATTCTTACATTAGAATTAGCAG  649

seq1  GCAAGAAATCTGATTTTTATTATATACATTAAGAGGGTTCAAGAGACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAATCTGATTTTTATTATATACATTAAGAGGGTTCAAGAGACTAG  699

seq1  TGTACAAGAAAGAATTC  717
      |||||||||||||||||
seq2  TGTACAAGAAAGAATTC  716

seq1: chr17_55233045_55234306
seq2: B6Ng01-044L04.g_66_1306

seq1  GAATTCTCATACCATGAAAGACAAAGAACCCACACTAGTTATTGCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATACCATGAAAGACAAAGAACCCACACTAGTTATTGCTAAGA  50

seq1  TTGCATAGATTCAAATAACTACAGACTAAATGAAAATTTGATGATTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGATTCAAATAACTACAGACTAAATGAAAATTTGATGATTAAAT  100

seq1  ATTAGGAGTTGTGTGCATACACATGTAGCACTGGCATAAACTATTCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGTTGTGTGCATACACATGTAGCACTGGCATAAACTATTCAGAA  150

seq1  CCAGCATGTTGGAACACACAAGAGAAAAACAAACAAACAAAACAATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTTGGAACACACAAGAGAAAAACAAACAAACAAAACAATAACA  200

seq1  AACAAAAAACAGATTTGAAAATAAGGATACCTATATCTGATTTTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAGATTTGAAAATAAGGATACCTATATCTGATTTTTTAAAA  250

seq1  TATAATTTTTATTTATTTATTTATTTATTTATTTATTTATTTTTACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTTATTTATTTATTTATTTATTTATTTATTTATTTTTACCTTT  300

seq1  TTCCTGTTATTACTCAGCAGCACAGCAAAAACTTAAGCAGAACCTTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTATTACTCAGCAGCACAGCAAAAACTTAAGCAGAACCTTGGAG  350

seq1  CTGAAACCCAGAGAAATTGTATAGTGAATAAAAATAGTTAATGTGTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCAGAGAAATTGTATAGTGAATAAAAATAGTTAATGTGTAGCC  400

seq1  AAAGGGCACTTACATAGCCAGCCTTTTGAAAAGGACATTAAACAGACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCACTTACATAGCCAGCCTTTTGAAAAGGACATTAAACAGACACC  450

seq1  AAATCTCCACATCAGCATTGACAGGGACAGATGTGAATTCCTGTCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCACATCAGCATTGACAGGGACAGATGTGAATTCCTGTCTCATT  500

seq1  CCTGCCCAGGAGTCTCAAAGCCTTCAAGCTTGCAAATCTCTTAAAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCAGGAGTCTCAAAGCCTTCAAGCTTGCAAATCTCTTAAAACTTG  550

seq1  CAAATGAGGTACTAGCCCTACTGAGAGAAAGAGAGCCTCCACTGTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGGTACTAGCCCTACTGAGAGAAAGAGAGCCTCCACTGTTCCAA  600

seq1  AGAAGGAGTGTTGAAAATTTTAAATGTATAGGATTCACCAGTTAAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTGTTGAAAATTTTAAATGTATAGGATTCACCAGTTAAGAGCA  650

seq1  CTTGGTAGAGCCTCCAGGTTGCTTATAAAAATTGGCTAGAAAGAAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGAGCCTCCAGGTTGCTTATAAAAATTGGCTAGAAAGAAATCCA  700

seq1  TTTTTATTTAAAATATCAGTTTAGGATAAAACCATTCTCCAACCTGCGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTAAAATATCAGTTTAGGATAAAACCATTCTCCAACCTGCGAC  750

seq1  ATTTTCAACATTTAACACTCAATAGTAACCATGACCTTTTCTTTGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACATTTAACACTCAATAGTAACCATGACCTTTTCTTTGTGAAG  800

seq1  TTACACAGAGACCATATTCATTAATCATTTCTTTTCAGAAGGGTGAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGAGACCATATTCATTAATCATTTCTTTTCAGAAGGGTGAATTC  850

seq1  ATTAGGTTTTAAAGCAGATATAGATTCCTAGCTGTTAGTCATGATTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTTAAAGCAGATATAGATTCCTAGCTGTTAGTCATGATTAGTT  900

seq1  GCTTATAAGGGTGTGGGGGTAATTAGTACCTCATTAGCACCACTCTTTTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTATAAGGGTGTGGGGGTAATTAGTACCTCATTAGCACCACTTTTTTT  950

seq1  TGTTAAAATACTAACAAGCACTACTGATACAGCATAATATGACCACTAAT  1000
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TGTTAAAATACTAAC-AGCACTACTGATACAGCAT-ATATGACCACTAAT  998

seq1  GCTCTGAAAAGACTAAGTCATGCTAGTAAATTACATTAATTTTTTAACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GCTCTGAAAAGACTAAGTCATGCTAGTAAATTACATTAATTTTT--ACTT  1046

seq1  GTCATTTCATGCATAAATTATTGA-GCT-AGAG-ATTTTGTCAGTATCTT  1097
      |||||||||||||| ||||||||| ||| |||| ||||||||||||||||
seq2  GTCATTTCATGCAT-AATTATTGAGGCTAAGAGAATTTTGTCAGTATCTT  1095

seq1  TTCTGTGTATAT-AAAGCAAAGAATACATAGAAAGGTGCTGTATCCTTAG  1146
      ||   |||  || ||||| |||||||| | ||   | ||||||| |||||
seq2  TTTCTTGTTAATAAAAGCCAAGAATAC-TTGA---GGGCTGTATTCTTAG  1141

seq1  CTCTAATCAACAAGAAACTTGTCAGCTCTTTCTTCTC-GGACACTTAAGT  1195
      || | |||||||   ||| ||| |||  |||  |||| |||| |      
seq2  CT-TTATCAACA--GAACCTGTAAGCCTTTTTCTCTCTGGACCC------  1182

seq1  GTATATACAAAAGAATGCTCTCAAAGAAACTCTGCGTGGGGTGGCAATCT  1245
       ||| || | ||||||||||   ||||| ||||||||||   ||||||||
seq2  -TAT-TATACAAGAATGCTC---AAGAACCTCTGCGTGG---GGCAATCT  1224

seq1  -CTTTTGAGAGTACAAGG  1262
       |||| ||||| ||||||
seq2  CCTTTGGAGAG-ACAAGG  1241