BAC Information

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BAC

Clone NameB6Ng01-045B05
Chromosome17 (Build37)
Map Location 28,285,638 - 28,432,295
singlet/doubletdoublet
Overlap geneScube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik
Upstream geneIhpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik
Downstream geneFance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045B05.bB6Ng01-045B05.g
ACCDH870640DH870641
length3111,028
definitionDH870640|Mus musculus domesticus DNA, BAC clone: B6Ng01-045B05, 5' end.DH870641|Mus musculus domesticus DNA, BAC clone: B6Ng01-045B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,431,985 - 28,432,295)(28,285,638 - 28,286,666)
sequence
tgggagaggtctgtgaagacaggacggaggggcagttaaacaatcagcta
ccaggcctacaagccaggtgggggaaggaagagctgcagcctagagctca
gctgaagagctcagcagccatgggctgtgtgactggggaaaagcttcaag
ggcccagcctcctctccagttcagggtcgggggaagccccgctaggcagg
cagctgagcagctgccgctcacagcctccctgactgggagaggagggggc
ctggtgggctttgggtaaatagcatcttcagtgggtcccggatgatggtg
gggtggagtgt
gaattcatggcaccgagcgaacatgaagcaagcatccaagaggatgctga
ggaggatgagtgacagcagcaagctcccattgggcactccctgtgtccac
acctgccccaggactggtgtagtggcactcaagtctagaacctcgtctcg
tagtgtgtctgtcacgttgctgcctccagagtgtctcccagttcaggcaa
gtagcttatttacacaagttggaaaagagagatagacaggcttgccctgg
aggtcctgatttcctgggtttagacatccatgagtcttcacaggtcccca
gattccagtgcacagcctgagtggaggaccaccatcctaaaccaactcac
gcctaaaagtgtcgcttggcttgcagctggtaaacagcttctaagaggat
ggatatgttgagggtgcccgtgtgtgccaccaaggtccctttgaggactt
atttagggctggcaggtgtgctgagaaggatctttgaagacctggcagag
gtggaaatgctgggtacgatttgatttagggccttgtctcgctgctctgt
gcctcaggccagaaaacttcagccatgccgttggaagtacctttcttcag
cagtcgccagccatgggagaggctacatgttacatgagacagcttcagaa
tgttagctaagtggctcagcaggaaccacaaaggggggcacgctcagtcc
ccctcaggctgggagcttactggggacagggcagacaattctgagccagt
cttggaaaacagaagtgggtggggttgcaatataaacgggaagaagtggg
atgcagtggactggttagctggtgctgagggagctggtacaagggattag
ctggtgccaggggagtagctggtgctaagggaagtaggagcagggtgaga
caccttccaagagcttcaaagcataaaacattggggagcagggaggttgc
tgagctaggaagatctggggcagcagcgggtctgttgtcggcttcaccgc
tgctctggttctgggggccaccttgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28431985_28432295
seq2: B6Ng01-045B05.b_49_359 (reverse)

seq1  ACACTCCACCCCACCATCATCCGGGACCCACTGAAGATGCTATTTACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCACCCCACCATCATCCGGGACCCACTGAAGATGCTATTTACCCA  50

seq1  AAGCCCACCAGGCCCCCTCCTCTCCCAGTCAGGGAGGCTGTGAGCGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACCAGGCCCCCTCCTCTCCCAGTCAGGGAGGCTGTGAGCGGCAG  100

seq1  CTGCTCAGCTGCCTGCCTAGCGGGGCTTCCCCCGACCCTGAACTGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGCTGCCTGCCTAGCGGGGCTTCCCCCGACCCTGAACTGGAGAG  150

seq1  GAGGCTGGGCCCTTGAAGCTTTTCCCCAGTCACACAGCCCATGGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGCCCTTGAAGCTTTTCCCCAGTCACACAGCCCATGGCTGCTG  200

seq1  AGCTCTTCAGCTGAGCTCTAGGCTGCAGCTCTTCCTTCCCCCACCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCAGCTGAGCTCTAGGCTGCAGCTCTTCCTTCCCCCACCTGGCT  250

seq1  TGTAGGCCTGGTAGCTGATTGTTTAACTGCCCCTCCGTCCTGTCTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCTGGTAGCTGATTGTTTAACTGCCCCTCCGTCCTGTCTTCACA  300

seq1  GACCTCTCCCA  311
      |||||||||||
seq2  GACCTCTCCCA  311

seq1: chr17_28285638_28286666
seq2: B6Ng01-045B05.g_69_1096

seq1  GAATTCATGGCACCGAGCGAACATGAAGCAAGCATCCAAGAGGATGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCACCGAGCGAACATGAAGCAAGCATCCAAGAGGATGCTGA  50

seq1  GGAGGATGAGTGACAGCAGCAAGCTCCCATTGGGCACTCCCTGTGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGAGTGACAGCAGCAAGCTCCCATTGGGCACTCCCTGTGTCCAC  100

seq1  ACCTGCCCCAGGACTGGTGTAGTGGCACTCAAGTCTAGAACCTCGTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCAGGACTGGTGTAGTGGCACTCAAGTCTAGAACCTCGTCTCG  150

seq1  TAGTGTGTCTGTCACGTTGCTGCCTCCAGAGTGTCTCCCAGTTCAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTCTGTCACGTTGCTGCCTCCAGAGTGTCTCCCAGTTCAGGCAA  200

seq1  GTAGCTTATTTACACAAGTTGGAAAAGAGAGATAGACAGGCTTGCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTATTTACACAAGTTGGAAAAGAGAGATAGACAGGCTTGCCCTGG  250

seq1  AGGTCCTGATTTCCTGGGTTTAGACATCCATGAGTCTTCACAGGTCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGATTTCCTGGGTTTAGACATCCATGAGTCTTCACAGGTCCCCA  300

seq1  GATTCCAGTGCACAGCCTGAGTGGAGGACCACCATCCTAAACCAACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGTGCACAGCCTGAGTGGAGGACCACCATCCTAAACCAACTCAC  350

seq1  GCCTAAAAGTGTCGCTTGGCTTGCAGCTGGTAAACAGCTTCTAAGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAGTGTCGCTTGGCTTGCAGCTGGTAAACAGCTTCTAAGAGGAT  400

seq1  GGATATGTTGAGGGTGCCCGTGTGTGCCACCAAGGTCCCTTTGAGGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTGAGGGTGCCCGTGTGTGCCACCAAGGTCCCTTTGAGGACTT  450

seq1  ATTTAGGGCTGGCAGGTGTGCTGAGAAGGATCTTTGAAGACCTGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGCTGGCAGGTGTGCTGAGAAGGATCTTTGAAGACCTGGCAGAG  500

seq1  GTGGAAATGCTGGGTACGATTTGATTTAGGGCCTTGTCTCGCTGCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATGCTGGGTACGATTTGATTTAGGGCCTTGTCTCGCTGCTCTGT  550

seq1  GCCTCAGGCCAGAAAACTTCAGCCATGCCGTTGGAAGTACCTTTCTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGCCAGAAAACTTCAGCCATGCCGTTGGAAGTACCTTTCTTCAG  600

seq1  CAGTCGCCAGCCATGGGAGAGGCTACATGTTACATGAGACAGCTTCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGCCAGCCATGGGAGAGGCTACATGTTACATGAGACAGCTTCAGAA  650

seq1  TGTTAGCTAAGTGGCTCAGCAGGAACCACAAAGGGGGGCACGCTCAGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTAAGTGGCTCAGCAGGAACCACAAAGGGGGGCACGCTCAGTCC  700

seq1  CCCTCAGGCTGGGAGCTTACTGGGGACAGGGCAGACAATTCTGAGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGCTGGGAGCTTACTGGGGACAGGGCAGACAATTCTGAGCCAGT  750

seq1  CTTGGAAAACAGAAGTGGGTGGGGTTGCAATATAAACGGGAAGAAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTGGAAAACAGAAGTGGGTGGGGTTGCAATATAAACGGGAAGAA-GTGG  799

seq1  GATGCAGTGGACTGGTTAGCTGGTGCTGAGGGAGCTGGTACCAAGGGAGT  850
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  GATGCAGTGGACTGGTTAGCTGGTGCTGAGGGAGCTGGTA-CAAGGGATT  848

seq1  AGCTGGTGCCAGGGGAGTAGCTGGTGCCAAGGG-AGTAGGAGCAGGGTGA  899
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  AGCTGGTGCCAGGGGAGTAGCTGGTGCTAAGGGAAGTAGGAGCAGGGTGA  898

seq1  GACACC-TCCCAGAGCTTCCAAAGCATAAAACATT-GGGAGCAGGGAGAT  947
      |||||| ||| ||||||| |||||||||||||||| |||||||||||| |
seq2  GACACCTTCCAAGAGCTT-CAAAGCATAAAACATTGGGGAGCAGGGAGGT  947

seq1  GGCTGAGGCTAGGAAGAGCCTGGGGCAGCCAGCGGG-CTGTGGTCGGCTT  996
       ||||| ||||||||||  ||||||||| ||||||| |||| ||||||||
seq2  TGCTGA-GCTAGGAAGA-TCTGGGGCAG-CAGCGGGTCTGTTGTCGGCTT  994

seq1  CACCGCTGCTCTGGTCCTGGGGGCCA-CTTGAGG  1029
      ||||||||||||||| |||||||||| ||||| |
seq2  CACCGCTGCTCTGGTTCTGGGGGCCACCTTGAAG  1028