BAC Information

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BAC

Clone NameB6Ng01-045D07
Chromosome17 (Build37)
Map Location 50,041,505 - 50,158,973
singlet/doubletdoublet
Overlap geneKif6, EG668470, Rftn1
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045D07.bB6Ng01-045D07.g
ACCDH870729DH870730
length1,043865
definitionDH870729|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D07, 5' end.DH870730|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,157,923 - 50,158,973)(50,041,505 - 50,042,366)
sequence
gaattcaccaaccctggctaccaaggagtcttggaactggagaaaatgga
attttctacgcattacatatattttcatctgttccccctttcctacataa
aaataacaaaaacagagacaaaaacaaaaaacaaaaacccttattccctt
tgaaggttttgagagccaaagttgtctaaaacgagatgactagtctctga
ggctctattatgttagcctaattacacatcagcaaaatgtttttctgggg
cattgtgcaaaaaacaaagagcaaaacaacatctccagccggccagcccg
tctgtccctccctctggttggcaggctctctgtcctgtgtgatgggatgc
ctgggggagcgtagatagcagggcagctctgtgtgggcctcagagaggtt
tactctctcctcagagagcatgggggaggccagctgttttctgctccttc
ctgcttcccccatggttcatgggcttccaacccatgtgcctgttcaccat
ggtctgggatccacagctttggccagtgtgagccagtttgaactgtggta
ctgccgtagcctaccctcagagatactaaggggcaaactggggttttctg
acagacccactactttccattggatagtagaggtgaaatgtctcttttca
ccttggcattctcctcctgccttagattttgggcacccttatctaagaat
atgatctccattttgtcccgtgtcgtcctctgtttccctacctcaccagg
gagcccggttcctagcttcattccttcctgcatttgcccccccacccccc
tcccaccctccctttggccatccattccaaactctcagaagaagacagaa
ttaagcatatattcatttgttccattactgtgaccaaatatctgacagaa
attggcttaaagggaggacaaggcctgctttactcatgtttctgagggtt
tcatccatcacagcaggtgtgggagcacgtgctgagagtgtgcctatcct
ggacaaacacaaggattaagatcatgaaagactgggggagact
gaattctctaagttcaaaaccaggcaagtggaactctgtaagttcaaaac
caggcaggtctatatagtagaaatttgtcccattccccatcccctctgaa
agccagttagagaagctctgaagagccctctgcccactactacagagagc
tgggcagcttccctaggaagctggagccctgattaggctaacagagttta
aacggcctcttgccagcaagggctgttggaaccatgagactagaacccta
gtcacctatctgagctcttctctcagagctacctcaggctgagtgcaccc
tctactggtggacctcaccatctcccattgctgttcctgaacacccaccc
tctaccctccaaccccccccccccaccgccatgcagcccctgagcagaat
tctacagatagggtgcccaccaaaaatcacagtgaccaagaacaaactcg
tcacccgattgtccaagagcgcactcactttgtggcgtccttcctaggca
tgagactggcaaagccagggggctctctaagccagatgaagaaagagcaa
aagaggagtcagtaccctcaccttttcagaagaatatttgcatctcacac
aactcttctgcttacaaaggattctgggaaatgtagttttttaacagtcg
cactttagctaaatatggttgtgatctgaaagagatagagaaatagcagc
ctctgccttgggggcaactagctacacctttgtcagccctgcgtgggtac
aggggagacatcatcaagatgtcaaactgtgctgggtgccaaaggaaaag
taggtagagtgtgattggtttgagtactctgggatgagagaatacaaagg
cttgaagatgacggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50157923_50158973
seq2: B6Ng01-045D07.b_45_1087 (reverse)

seq1  AGTCTCCCCCCACAGTCTCTACATGATCTTAATCCCTTGTGTTCTGGTCC  50
      |||||||||   |||||| | |||||||||||| ||||||||  | ||||
seq2  AGTCTCCCC---CAGTCT-TTCATGATCTTAAT-CCTTGTGT--TTGTCC  43

seq1  ATGGGTGTGCACACTCTCTGCCACGTGCTCCCACCACCTGCTGTGATGGA  100
      | || |  |||||||||| | |||||||||||| ||||||||||||||||
seq2  A-GGATAGGCACACTCTCAG-CACGTGCTCCCA-CACCTGCTGTGATGGA  90

seq1  TTGAAACCCTCAGAAAACATGAGTTAAAGCAGGCC-TGTCCTCCC-TTAA  148
       |||||||||||| ||||||||| ||||||||||| ||||||||| ||||
seq2  -TGAAACCCTCAG-AAACATGAG-TAAAGCAGGCCTTGTCCTCCCTTTAA  137

seq1  GCC-ATCTCTGTCAGATATTTTGGTCACAGTAATGGA--CAATGAATATA  195
      ||| || ||||||||||| ||||||||||||||||||   ||||||||| 
seq2  GCCAATTTCTGTCAGATA-TTTGGTCACAGTAATGGAACAAATGAATAT-  185

seq1  ATGCTTAATTCTGTCTTCTTCTGAGAGTTTGGAATGGATGGCC-AAGGGA  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGCTTAATTCTGTCTTCTTCTGAGAGTTTGGAATGGATGGCCAAAGGGA  235

seq1  GGGTGGGAGGGGGGTGGGGGGGCAAATGCAGGAAGGAATGAAGCTAGGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGGGGGGTGGGGGGGCAAATGCAGGAAGGAATGAAGCTAGGAA  285

seq1  CCGGGCTCCCTGGTGAGGTAGGGAAACAGAGGACGACACGGGAC-AAATG  343
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCGGGCTCCCTGGTGAGGTAGGGAAACAGAGGACGACACGGGACAAAATG  335

seq1  GAGATCATATTCTTAGATAAGGGTGCCCAAAATCTAAGGCAGGAGGAGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATATTCTTAGATAAGGGTGCCCAAAATCTAAGGCAGGAGGAGAA  385

seq1  TGCCAAGGTGAAAAGAGACATTTCACCTCTACTATCCAATGGAAAGTAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGTGAAAAGAGACATTTCACCTCTACTATCCAATGGAAAGTAGT  435

seq1  GGGTCTGTCAGAAAACCCCAGTTTGCCCCTTAGTATCTCTGAGGGTAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTCAGAAAACCCCAGTTTGCCCCTTAGTATCTCTGAGGGTAGGC  485

seq1  TACGGCAGTACCACAGTTCAAACTGGCTCACACTGGCCAAAGCTGTGGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCAGTACCACAGTTCAAACTGGCTCACACTGGCCAAAGCTGTGGAT  535

seq1  CCCAGACCATGGTGAACAGGCACATGGGTTGGAAGCCCATGAACCATGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCATGGTGAACAGGCACATGGGTTGGAAGCCCATGAACCATGGG  585

seq1  GGAAGCAGGAAGGAGCAGAAAACAGCTGGCCTCCCCCATGCTCTCTGAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGAAGGAGCAGAAAACAGCTGGCCTCCCCCATGCTCTCTGAGG  635

seq1  AGAGAGTAAACCTCTCTGAGGCCCACACAGAGCTGCCCTGCTATCTACGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTAAACCTCTCTGAGGCCCACACAGAGCTGCCCTGCTATCTACGC  685

seq1  TCCCCCAGGCATCCCATCACACAGGACAGAGAGCCTGCCAACCAGAGGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGGCATCCCATCACACAGGACAGAGAGCCTGCCAACCAGAGGGA  735

seq1  GGGACAGACGGGCTGGCCGGCTGGAGATGTTGTTTTGCTCTTTGTTTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGACGGGCTGGCCGGCTGGAGATGTTGTTTTGCTCTTTGTTTTTT  785

seq1  GCACAATGCCCCAGAAAAACATTTTGCTGATGTGTAATTAGGCTAACATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGCCCCAGAAAAACATTTTGCTGATGTGTAATTAGGCTAACATA  835

seq1  ATAGAGCCTCAGAGACTAGTCATCTCGTTTTAGACAACTTTGGCTCTCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCTCAGAGACTAGTCATCTCGTTTTAGACAACTTTGGCTCTCAA  885

seq1  AACCTTCAAAGGGAATAAGGGTTTTTGTTTTTTGTTTTTGTCTCTGTTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCAAAGGGAATAAGGGTTTTTGTTTTTTGTTTTTGTCTCTGTTTT  935

seq1  TGTTATTTTTATGTAGGAAAGGGGGAACAGATGAAAATATATGTAATGCG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTTATGTAGGAAAGGGGGAACAGATGAAAATATATGTAATGCG  985

seq1  TAGAAAATTCCATTTTCTCCAGTTCCAAGACTCCTTGGTAGCCAGGGTTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTCCATTTTCTCCAGTTCCAAGACTCCTTGGTAGCCAGGGTTG  1035

seq1  GTGAATTC  1051
      ||||||||
seq2  GTGAATTC  1043

seq1: chr17_50041505_50042366
seq2: B6Ng01-045D07.g_70_934

seq1  GAATTCTCTAAGTTCAAAACCAGGCAAGTGGAACTCTGTAAGTTCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGTTCAAAACCAGGCAAGTGGAACTCTGTAAGTTCAAAAC  50

seq1  CAGGCAGGTCTATATAGTAGAAATTTGTCCCATTCCCCATCCCCTCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTCTATATAGTAGAAATTTGTCCCATTCCCCATCCCCTCTGAA  100

seq1  AGCCAGTTAGAGAAGCTCTGAAGAGCCCTCTGCCCACTACTACAGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTAGAGAAGCTCTGAAGAGCCCTCTGCCCACTACTACAGAGAGC  150

seq1  TGGGCAGCTTCCCTAGGAAGCTGGAGCCCTGATTAGGCTAACAGAGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCTTCCCTAGGAAGCTGGAGCCCTGATTAGGCTAACAGAGTTTA  200

seq1  AACGGCCTCTTGCCAGCAAGGGCTGTTGGAACCATGAGACTAGAACCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCTCTTGCCAGCAAGGGCTGTTGGAACCATGAGACTAGAACCCTA  250

seq1  GTCACCTATCTGAGCTCTTCTCTCAGAGCTACCTCAGGCTGAGTGCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTATCTGAGCTCTTCTCTCAGAGCTACCTCAGGCTGAGTGCACCC  300

seq1  TCTACTGGTGGACCTCACCATCTCCCATTGCTGTTCCTGAACACCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGTGGACCTCACCATCTCCCATTGCTGTTCCTGAACACCCACCC  350

seq1  TCTACCCTCCAACCCCCCCCCCCCACCGCCATGCAGCCCCTGAGCAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCCAACCCCCCCCCCCCACCGCCATGCAGCCCCTGAGCAGAAT  400

seq1  TCTACAGATAGGGTGCCCACCAAAAATCACAGTGACCAAGAACAAACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATAGGGTGCCCACCAAAAATCACAGTGACCAAGAACAAACTCG  450

seq1  TCACCCGATTGTCCAAGAGCGCACTCACTTTGTGGCGTCCTTCCTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCGATTGTCCAAGAGCGCACTCACTTTGTGGCGTCCTTCCTAGGCA  500

seq1  TGAGACTGGCAAAGCCAGGGGGCTCTCTAAGCCAGATGAAGAAAGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGGCAAAGCCAGGGGGCTCTCTAAGCCAGATGAAGAAAGAGCAA  550

seq1  AAGAGGAGTCAGTACCCTCACCTTTTCAGAAGAATATTTGCATCTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTCAGTACCCTCACCTTTTCAGAAGAATATTTGCATCTCACAC  600

seq1  AACTCTTCTGCTTACAAAGGATTCTGGGAAATGTAG-TTTTTAACAGTCG  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACTCTTCTGCTTACAAAGGATTCTGGGAAATGTAGTTTTTTAACAGTCG  650

seq1  CACTTTAGCTAAATATGGTTGTGATCTGAAAGAGATAGAG-AATAGCAGC  698
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACTTTAGCTAAATATGGTTGTGATCTGAAAGAGATAGAGAAATAGCAGC  700

seq1  CTCTGCCTTGGGGGCAACTAGCTACACC-TTGTCAGCCCTGCGTGGGTAC  747
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCTGCCTTGGGGGCAACTAGCTACACCTTTGTCAGCCCTGCGTGGGTAC  750

seq1  AGGGGAGACATCATCAAGATGTCAAACTGTGCTGGGTGCCAAAGGAAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGACATCATCAAGATGTCAAACTGTGCTGGGTGCCAAAGGAAAAG  800

seq1  TAGGTAGAGTGTGATTGGTTTGAGTACGTCTGGGATGAGAGAATACAAAG  847
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAGGTAGAGTGTGATTGGTTTGAGTAC-TCTGGGATGAGAGAATACAAAG  849

seq1  GC-TGGAGATGACGGG  862
      || || ||||||||||
seq2  GCTTGAAGATGACGGG  865