BAC Information

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BAC

Clone NameB6Ng01-046C21
Chromosome17 (Build37)
Map Location 46,769,667 - 46,908,131
singlet/doubletdoublet
Overlap geneKlc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra
Upstream geneCapn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7
Downstream gene2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C21.bB6Ng01-046C21.g
ACCDH871420DH871421
length1,001897
definitionDH871420|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C21, 5' end.DH871421|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,907,128 - 46,908,131)(46,769,667 - 46,770,385)
sequence
gaattctctggtcttctggaaggacagccagtgcctggaggccattattg
agggtccccagtgatctctcctgtagcccctgcagctgtctctgcatgtt
catccaacttcctggacctgacagagtcagtgcagcaggctccctggcct
tctagtttctgggcctggtcaggctgggagagagtagcaggaggagagaa
gagatagcttcaacagatttcattctgtttcccctcctcagggtctcatc
ggcagcagtccctccacacagccctctggtttaagggttctgacacagct
cccttctcactctctcagatgctacgttgtctcctgggaactcccttgtc
cttgcccacatcgctctctgcccatgggctctactaaattctccttagat
tttccaatgtcgtcgtctctttctctcccgcccttcctcaccaacactag
aagtggttccttccaggagtagacagaacagagtgttaggattagccctc
ccacgctgtgcagggggacatgcgtgtgactggaggggacatgcgtgtga
ctggggatcccattcatgtgaggagatcgtggatagatgttgtgcccagc
tctgcgtggccatgttgcttgttttttatatctatagggaaacacaaggg
tcctcaacttctgacagaagggtagcttggattggcaccctggctggagg
ccggcattgagacatcaccgtgagatcaccaagttccaggaccgattaaa
ggctcagcccttcctttcttataggatttcattttgtagtccaggaaggc
ctggaactcaccacccacctaccttagctgcttgattctggcatgagctc
ccacacttggacttccagatgtccgttgtaaaatcagaaaggtaagagtt
actgagtgaccttgagatgggtcagagatattacatatctctatctacat
atctatgatatcattgtagatagatagatgatagaagatagataaataga
t
gaattcaggacagtagtagtgagcagacttacccctgaccactccacagc
cactgatgcgtcttcacctccctcgaacttcacgctgtctccaggaccct
cctggatggcctttctaccatctccttccccgagcagctctgccaccttg
gtctgactgatggggtcagtaccctggaagaaagaggaggagatgttagg
aacacagcccagccttataagctgctcttccagaggacacagattcagtt
cccagcacctacgtggcagctcacaagttacaaggcctgtaaccccagag
ctggggattcagtgctctcttctgatctcagtgagcactgcatgcatgca
gacacatgtgcaggccaaatcacacacacacacacacacacacacacaca
actgtaaaagaacgagtactgagagagaaggttggaattgaggatcattt
caggggtaacctagaaacctcatgcaatggaaactctctggaatctatga
gggtgaccctagcatagacccctggtactgagagacacagagcctgaacc
accttctatactgggaaaatggaggaactgggacaccaacctggccacaa
aatcttctatgtacagttagtttgtcctgcctacaagatgtgctaaggta
aaggtggtgcagaactggtgggggccaaccagtgactgggcccagtttaa
gccccatgccatgagtcggtgctcatccctgacactgcctggagggccag
gaccagaggctggataacctagggtaagatagaatcaaacaaggctgggg
gcggggggcaatgaaatgaatgctgcttatattctgctgtccttgtaggc
tagagcctagcataatcatctcagagaggcttcatcagcgactgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46907128_46908131
seq2: B6Ng01-046C21.b_29_1029 (reverse)

seq1  ATCTATCTATCTATCTATCTATCCATCTATCTATCTACATTGATATCATA  50
      |||||| ||||||||| ||||| |||||||||||||||| ||||||||||
seq2  ATCTATTTATCTATCT-TCTAT-CATCTATCTATCTACAATGATATCATA  48

seq1  GATATGTAGATAGAGATATGTAATATCTCTGACCCATCTCAAGGTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATATGTAGATAGAGATATGTAATATCTCTGACCCATCTCAAGGT-CACT  97

seq1  CAGTAACTCTTACCTTTCTGATTTTTACAACGGACATCTGGAAGTCCAAG  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTAACTCTTACCTTTCTGA-TTTTACAACGGACATCTGGAAGTCCAAG  146

seq1  TGTGGGAGCTCATGCCAGAATCAAGCAGCTAAGGTAGGTGGGTGGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGCTCATGCCAGAATCAAGCAGCTAAGGTAGGTGGGTGGTGAGT  196

seq1  TCCAGGCCTTCCTGGACTACAAAATGAAATCCTATAAGAAAGGAAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCCTTCCTGGACTACAAAATGAAATCCTATAAGAAAGGAAGGGCT  246

seq1  GAGCCTTTAATCGGTCCTGGAACTTGGTGATCTCACGGTGATGTCTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTAATCGGTCCTGGAACTTGGTGATCTCACGGTGATGTCTCAAT  296

seq1  GCCGGCCTCCAGCCAGGGTGCCAATCCAAGCTACCCTTCTGTCAGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCCTCCAGCCAGGGTGCCAATCCAAGCTACCCTTCTGTCAGAAGTT  346

seq1  GAGGACCCTTGTGTTTCCCTATAGATAT-AAAAACAAGCAACATGGCCAC  399
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGACCCTTGTGTTTCCCTATAGATATAAAAAACAAGCAACATGGCCAC  396

seq1  GCAGAGCTGGGCACAACATCTATCCACGATCTCCTCACATGAATGGGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGGGCACAACATCTATCCACGATCTCCTCACATGAATGGGATC  446

seq1  CCCAGTCACACGCATGTCCCCTCCAGTCACACGCATGTCCCCCTGCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCACACGCATGTCCCCTCCAGTCACACGCATGTCCCCCTGCACAG  496

seq1  CGTGGGAGGGCTAATCCTAACACTCTGTTCTGTCTACTCCTGGAAGGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAGGGCTAATCCTAACACTCTGTTCTGTCTACTCCTGGAAGGAAC  546

seq1  CACTTCTAGTGTTGGTGAGGAAGGGCGGGAGAGAAAGAGACGACGACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTAGTGTTGGTGAGGAAGGGCGGGAGAGAAAGAGACGACGACATT  596

seq1  GGAAAATCTAAGGAGAATTTAGTAGAGCCCATGGGCAGAGAGCGATGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATCTAAGGAGAATTTAGTAGAGCCCATGGGCAGAGAGCGATGTGG  646

seq1  GCAAGGACAAGGGAGTTCCCAGGAGACAACGTAGCATCTGAGAGAGTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAAGGGAGTTCCCAGGAGACAACGTAGCATCTGAGAGAGTGAG  696

seq1  AAGGGAGCTGTGTCAGAACCCTTAAACCAGAGGGCTGTGTGGAGGGACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCTGTGTCAGAACCCTTAAACCAGAGGGCTGTGTGGAGGGACTG  746

seq1  CTGCCGATGAGACCCTGAGGAGGGGAAACAGAATGAAATCTGTTGAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGATGAGACCCTGAGGAGGGGAAACAGAATGAAATCTGTTGAAGCT  796

seq1  ATCTCTTCTCTCCTCCTGCTACTCTCTCCCAGCCTGACCAGGCCCAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTCTCCTCCTGCTACTCTCTCCCAGCCTGACCAGGCCCAGAAA  846

seq1  CTAGAAGGCCAGGGAGCCTGCTGCACTGACTCTGTCAGGTCCAGGAAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGCCAGGGAGCCTGCTGCACTGACTCTGTCAGGTCCAGGAAGTT  896

seq1  GGATGAACATGCAGAGACAGCTGCAGGGGCTACAGGAGAGATCACTGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACATGCAGAGACAGCTGCAGGGGCTACAGGAGAGATCACTGGGG  946

seq1  ACCCTCAATAATGGCCTCCAGGCACTGGCTGTCCTTCCAGAAGACCAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAATAATGGCCTCCAGGCACTGGCTGTCCTTCCAGAAGACCAGAG  996

seq1  AATTC  1004
      |||||
seq2  AATTC  1001

seq1: chr17_46769667_46770385
seq2: B6Ng01-046C21.g_63_782

seq1  GAATTCAGGACAGTAGTAGTGAGCAGACTTACCCCTGACCACTCCACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACAGTAGTAGTGAGCAGACTTACCCCTGACCACTCCACAGC  50

seq1  CACTGATGCGTCTTCACCTCCCTCGAACTTCACGCTGTCTCCAGGACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGCGTCTTCACCTCCCTCGAACTTCACGCTGTCTCCAGGACCCT  100

seq1  CCTGGATGGCCTTTCTACCATCTCCTTCCCCGAGCAGCTCTGCCACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGGCCTTTCTACCATCTCCTTCCCCGAGCAGCTCTGCCACCTTG  150

seq1  GTCTGACTGATGGGGTCAGTACCCTGGAAGAAAGAGGAGGAGATGTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTGATGGGGTCAGTACCCTGGAAGAAAGAGGAGGAGATGTTAGG  200

seq1  AACACAGCCCAGCCTTATAAGCTGCTCTTCCAGAGGACACAGATTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCCCAGCCTTATAAGCTGCTCTTCCAGAGGACACAGATTCAGTT  250

seq1  CCCAGCACCTACGTGGCAGCTCACAAGTTACAAGGCCTGTAACCCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCTACGTGGCAGCTCACAAGTTACAAGGCCTGTAACCCCAGAG  300

seq1  CTGGGGATTCAGTGCTCTCTTCTGATCTCAGTGAGCACTGCATGCATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATTCAGTGCTCTCTTCTGATCTCAGTGAGCACTGCATGCATGCA  350

seq1  GACACATGTGCAGGCCAAATCACACACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTGCAGGCCAAATCACACACACACACACACACACACACACACA  400

seq1  ACTGTAAAAGAACGAGTACTGAGAGAGAAGGTTGGAATTGAGGATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAGAACGAGTACTGAGAGAGAAGGTTGGAATTGAGGATCATTT  450

seq1  CAGGGGTAACCTAGAAACCTCATGCAATGGAAACTCTCTGGAATCTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAACCTAGAAACCTCATGCAATGGAAACTCTCTGGAATCTATGA  500

seq1  GGGTGACCCTAGCATAGACCCCTGGTACTGAGAGACACAGAGCCTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACCCTAGCATAGACCCCTGGTACTGAGAGACACAGAGCCTGAACC  550

seq1  ACCTTCTATACTGGGAAAATGGAGGAACTGGGACACCAACCTGGCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTATACTGGGAAAATGGAGGAACTGGGACACCAACCTGGCCACAA  600

seq1  AATCTTCTATGTACAGTTAGTTTGTCCTGCCTACAAGATGTGCTAAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTATGTACAGTTAGTTTGTCCTGCCTACAAGATGTGCTAAGGTA  650

seq1  AAGGTGGTGCAGAACTGGTGGGGGCCAACCAGTGACT-GGCCCAGTTTAA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGGTGGTGCAGAACTGGTGGGGGCCAACCAGTGACTGGGCCCAGTTTAA  700

seq1  GCCCCATGCCATGAGTCGGT  719
      ||||||||||||||||||||
seq2  GCCCCATGCCATGAGTCGGT  720