BAC Information

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BAC

Clone NameB6Ng01-047C23
Chromosome17 (Build37)
Map Location 65,400,774 - 65,537,372
singlet/doubletdoublet
Overlap genenone
Upstream geneFert2, LOC669778, Pja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C23.bB6Ng01-047C23.g
ACCDH872116DH872117
length1,043900
definitionDH872116|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C23, 5' end.DH872117|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,400,774 - 65,401,854)(65,536,466 - 65,537,372)
sequence
gaattcagacggagaaataagaagatatgattttaattcttccaaatgtg
cttgatcttcacagctggaagaagaagatctgtagtcagtgaaaagatta
agaataacagcagattttggcaacatatttatggcttcatgacagatgga
gggacatttttaaaaagtttggcaaagggtcactacccagaaacagatac
ccaatgtaggaaaatacattagcacaggtcatggatttctcactcactgc
tttacacactgcatttcgtgtcacagttcctgccttgtccccaatgtcct
tttggaaacattaagattctgcctggaagcctgaatagttcactcattgt
ggccaagatcccataggccatgtgtagctgtcttctggctcgtggtacaa
tctccctaagcagtaacgtgttcagagcatcctggtatggagggcaggct
tggaggaataccctatggtttgcttaaaaggctatagctcccagcagtgt
ggacacggcatgtcaaagatgggaaagaaaaggggattgtgtcaatggaa
ccaacagcttcctgtgtacacactagccctttgtctaggagcttttatat
cagatccaggtaataatgtcccttatattggaaaccaataggttctcttt
ctgtccatctcaaatattttcctttgtgctcaatattcaactacaactcc
ctgcttgttcctaactctctaccactgtctttaaaaacttgtgcaatttg
atttctgtatcctccaacccttatacagtcagtgttccttaattgtacca
ctggttctaggaacacattactctagacttcttgatacctctgctagcat
gtgatatttcttttactgtctgtttctgagtctctctctttgtctgcttt
ctcatcttacagaccctattttgtgctatatcagattctctctcactctg
ctttctctaacattgtgtttctacaagatagtactctttgtgaatgagcc
ctcaaatgcatatcacatcagcctttgctctagctgatctaat
gaattcataccatgacaacagtaggtgacaggccaatatgaatgtgggaa
atctcaaaacatctggctctagaggaaaggctacaagcaatcagtgggtg
ccaagagagggagaaccagtcacattaaaaaaaaaatcacgtagtccaac
tgcctagagttataattataccctaagtagttagtattaattatattatt
tcgcaaattttactttaatttttcaagagaaatatcccaatgaaacattt
tatcactattccctataatgttgattggggtttcaccttaagtggacttt
cccaataccaattagcctcagataatgaagttttatgtagatatcttttc
acagtgtgctgtttccgtcagatatagtttaagatagaagcaacttcaag
tctaacatactgtagagtaaagttaggtgaggattttgtttgtttttatg
ccttagttaatgggaagcctgcatgatgtcggccgctggtaggttgagtc
gatcaaactaaaacaaggttgttgctctagcttttgatatcatgcatgca
agtctttgagatggcaagaataagtaggaagcatatgaaagagaaactgt
tcccaggcaagtccaccaaaattttggttacttctctgccatcagaaacg
aagaatcaattcatagggatctcttaaggctttgcttacttctggttttg
tagtagagttgtttataaaagttaattttgtttttcataactctgaaatg
ctcctgagattcttgggtgtcctctcttaaagttaaatgtgagctatcat
tcggaagcctagttccatttggggatatgattcagttggaaagtatttgc
atagcatgtacaccctgggcatgtggggcacatctgtaccctactagagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65400774_65401854
seq2: B6Ng01-047C23.b_47_1089

seq1  GAATTCAGACGGAGAAATAAGAAGATATGATTTTAATTCTTCCAAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACGGAGAAATAAGAAGATATGATTTTAATTCTTCCAAATGTG  50

seq1  CTTGATCTTCACAGCTGGAAGAAGAAGATCTGTAGTCAGTGAAAAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTCACAGCTGGAAGAAGAAGATCTGTAGTCAGTGAAAAGATTA  100

seq1  AGAATAACAGCAGATTTTGGCAACATATTTATGGCTTCATGACAGATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACAGCAGATTTTGGCAACATATTTATGGCTTCATGACAGATGGA  150

seq1  GGGACATTTTTAAAAAGTTTGGCAAAGGGTCACTACCCAGAAACAGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTTTAAAAAGTTTGGCAAAGGGTCACTACCCAGAAACAGATAC  200

seq1  CCAATGTAGGAAAATACATTAGCACAGGTCATGGATTTCTCACTCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAGGAAAATACATTAGCACAGGTCATGGATTTCTCACTCACTGC  250

seq1  TTTACACACTGCATTTCGTGTCACAGTTCCTGCCTTGTCCCCAATGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACACTGCATTTCGTGTCACAGTTCCTGCCTTGTCCCCAATGTCCT  300

seq1  TTTGGAAACATTAAGATTCTGCCTGGAAGCCTGAATAGTTCACTCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAACATTAAGATTCTGCCTGGAAGCCTGAATAGTTCACTCATTGT  350

seq1  GGCCAAGATCCCATAGGCCATGTGTAGCTGTCTTCTGGCTCGTGGTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGATCCCATAGGCCATGTGTAGCTGTCTTCTGGCTCGTGGTACAA  400

seq1  TCTCCCTAAGCAGTAACGTGTTCAGAGCATCCTGGTATGGAGGGCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAAGCAGTAACGTGTTCAGAGCATCCTGGTATGGAGGGCAGGCT  450

seq1  TGGAGGAATACCCTATGGTTTGCTTAAAAGGCTATAGCTCCCAGCAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATACCCTATGGTTTGCTTAAAAGGCTATAGCTCCCAGCAGTGT  500

seq1  GGACACGGCATGTCAAAGATGGGAAAGAAAAGGGGATTGTGTCAATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGCATGTCAAAGATGGGAAAGAAAAGGGGATTGTGTCAATGGAA  550

seq1  CCAACAGCTTCCTGTGTACACACTAGCCCTTTGTCTAGGAGCTTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCTTCCTGTGTACACACTAGCCCTTTGTCTAGGAGCTTTTATAT  600

seq1  CAGATCCAGGTAATAATGTCCCTTATATTGGAAACCAATAGGTTCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAGGTAATAATGTCCCTTATATTGGAAACCAATAGGTTCTCTTT  650

seq1  CTGTCCATCTCAAATATTTTCCTTTGTGCTCAATATTCAACTACAACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATCTCAAATATTTTCCTTTGTGCTCAATATTCAACTACAACTCC  700

seq1  CTGCTTGTTCCTAACTCTCTACCACTGTCTTTAAAAACTTGTGCAATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTTCCTAACTCTCTACCACTGTCTTTAAAAACTTGTGCAATTTG  750

seq1  ATTTCTGTATCCTCCAACCCTTATACAGTCAGTGTTCCTTAATTGTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTATCCTCCAACCCTTATACAGTCAGTGTTCCTTAATTGTACCA  800

seq1  CTGGTTCTTAGGAACACATTACTCTAGACTTCTTGATACCTCTGCTTAGC  850
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGTTC-TAGGAACACATTACTCTAGACTTCTTGATACCTCTGC-TAGC  848

seq1  ATGTGATATTTCTTTTTACTGGTTCTGTTTCTGAGTCTCTCTCTTTGTCT  900
      |||||||||||| ||||||||  |||||||||||||||||||||||||| 
seq2  ATGTGATATTTC-TTTTACTG--TCTGTTTCTGAGTCTCTCTCTTTGTC-  894

seq1  TGCTTTTCTCATCTTTACAGACCCTTAATTTTTTGGTGGCTTATAATCAA  950
      ||| ||||||||| |||||||||||  ||||| ||      ||| ||| |
seq2  TGC-TTTCTCATC-TTACAGACCCT--ATTTTGTG-----CTAT-ATC-A  933

seq1  GATTTCCTCTCCTCACCTTCTGCCTTTTCTCTAAACATTTGTGTTTCTAC  1000
      ||||  |||| |||||  |||||  ||||||| |||| ||||||||||||
seq2  GATT--CTCT-CTCAC--TCTGC--TTTCTCT-AACA-TTGTGTTTCTAC  974

seq1  CAAAGATAGTACTCTTTGTGGAAATGAGCACTTTCAAAATGCATATCAAC  1050
        ||||||||||||||||||  ||||||| ||    ||||||||||| ||
seq2  --AAGATAGTACTCTTTGTG--AATGAGCCCT---CAAATGCATATC-AC  1016

seq1  ATCAGTCTTATGCCTCTAGCATAGATCTAAT  1081
      ||||| ||| || |||||||   ||||||||
seq2  ATCAGCCTT-TG-CTCTAGC--TGATCTAAT  1043

seq1: chr17_65536466_65537372
seq2: B6Ng01-047C23.g_66_965 (reverse)

seq1  CCTCTAGTAGGGTTACAGATGTGCCCCACCATGCCCAGGGGTTGTACATG  50
      |||||||||||| ||||||||||||||| |||||||||||  ||||||||
seq2  CCTCTAGTAGGG-TACAGATGTGCCCCA-CATGCCCAGGG--TGTACATG  46

seq1  CTATGCAAATACTTTCCCAACTGAATCATATCCCCAAATGGAACTAGGCT  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTATGCAAATACTTT-CCAACTGAATCATATCCCCAAATGGAACTAGGCT  95

seq1  TCCGAATGAATAGCCTCACATTTAACTTTAAGAGAGGACACCCAAGAATC  150
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TCCGAATG-ATAG-CTCACATTTAACTTTAAGAGAGGACACCCAAGAATC  143

seq1  TCAGGAGCATTTCAGAGTTATGAAAAACAAAATTAACTTTTATAAACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCATTTCAGAGTTATGAAAAACAAAATTAACTTTTATAAACAAC  193

seq1  TCTACTACAAAACCAGAAGTAAGCAAAGCCTTAAGAGATCCCTATGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACAAAACCAGAAGTAAGCAAAGCCTTAAGAGATCCCTATGAATT  243

seq1  GATTCTTCGTTTCTGATGGCAGAGAAGTAACCAAAATTTTGGTGGACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCGTTTCTGATGGCAGAGAAGTAACCAAAATTTTGGTGGACTTG  293

seq1  CCTGGGAACAGTTTCTCTTTCATATGCTTCCTACTTATTCTTGCCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAACAGTTTCTCTTTCATATGCTTCCTACTTATTCTTGCCATCTC  343

seq1  AAAGACTTGCATGCATGATATCAAAAGCTAGAGCAACAACCTTGTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTGCATGCATGATATCAAAAGCTAGAGCAACAACCTTGTTTTAG  393

seq1  TTTGATCGACTCAACCTACCAGCGGCCGACATCATGCAGGCTTCCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCGACTCAACCTACCAGCGGCCGACATCATGCAGGCTTCCCATTA  443

seq1  ACTAAGGCATAAAAACAAACAAAATCCTCACCTAACTTTACTCTACAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGCATAAAAACAAACAAAATCCTCACCTAACTTTACTCTACAGTA  493

seq1  TGTTAGACTTGAAGTTGCTTCTATCTTAAACTATATCTGACGGAAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACTTGAAGTTGCTTCTATCTTAAACTATATCTGACGGAAACAGC  543

seq1  ACACTGTGAAAAGATATCTACATAAAACTTCATTATCTGAGGCTAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGAAAAGATATCTACATAAAACTTCATTATCTGAGGCTAATTGG  593

seq1  TATTGGGAAAGTCCACTTAAGGTGAAACCCCAATCAACATTATAGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGAAAGTCCACTTAAGGTGAAACCCCAATCAACATTATAGGGAAT  643

seq1  AGTGATAAAATGTTTCATTGGGATATTTCTCTTGAAAAATTAAAGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAAATGTTTCATTGGGATATTTCTCTTGAAAAATTAAAGTAAAA  693

seq1  TTTGCGAAATAATATAATTAATACTAACTACTTAGGGTATAATTATAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGAAATAATATAATTAATACTAACTACTTAGGGTATAATTATAACT  743

seq1  CTAGGCAGTTGGACTACGTGATTTTTTTTTTAATGTGACTGGTTCTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGTTGGACTACGTGATTTTTTTTTTAATGTGACTGGTTCTCCCT  793

seq1  CTCTTGGCACCCACTGATTGCTTGTAGCCTTTCCTCTAGAGCCAGATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCACCCACTGATTGCTTGTAGCCTTTCCTCTAGAGCCAGATGTT  843

seq1  TTGAGATTTCCCACATTCATATTGGCCTGTCACCTACTGTTGTCATGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTTCCCACATTCATATTGGCCTGTCACCTACTGTTGTCATGGTA  893

seq1  TGAATTC  907
      |||||||
seq2  TGAATTC  900