BAC Information

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BAC

Clone NameB6Ng01-047M06
Chromosome17 (Build37)
Map Location 60,147,482 - 60,148,684
singlet/doubletsinglet
Overlap genenone
Upstream geneNudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M06.bB6Ng01-047M06.g
ACCDH872533DH872534
length1,2151,167
definitionDH872533|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M06, 5' end.DH872534|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgtattatgtttaataatttttattaatatttaagagattttt
tccatatgaaatcatctttttatttgaaaaataaaaggatatccccttca
ataaataacggcaggaaattgagttttgcttgttgaagaatcaaggtaaa
accctaattttcaacagttacaaaaaattcaaagcttggaagtagagatg
aacataaaacatcaaccacaaaactcctaaaaaaattatcatgagaacat
tgaataaattaatcaggacaatgaaaaccagaaagttcctatgaaaaaga
acccaggaaaaacaggcatcaatagcaacagcaggaacaaaagcatacga
gggtcacaagaaaatgagtgtgtatgcaagcaaaaatgatcagaatcaat
aacaaaagaatcaatatatgtaagaagaataatatttgtgaagtatgcat
ctgatatactaaggtaattatagtatattatgaaatccaagtaaagagaa
acaaaataatctgtttaagatttgaaactgtgtttctgttggtatagtgc
ttaaagccatgggtttaatctctagtataacataaaaaccaagtacagaa
actcacatctataatcctagcactaagatgtagaggcaggaggactagaa
gtttagggccagcctctgatttgaggtcagcctgggcaatgtgagacctt
gtccttaatatatttaacatatatatatatatatatatatatataaacac
gtgtgtgtttgtgtgtgaatttgtaatatatttgaaatatattcattata
tatgtgtgtattgggaaatttgaatatatatgaatattactatatatgta
tttccaaatacaataaatcatatacttatacatataatttgatgtataat
attattaaaatagtctaaaataaataaggaataatgaaattaaagacaca
tttctatatatctatatcactctttcatctcactggtacagctcatccca
gtttttctcatttcttcattcataagaactgggtctactatcaatttctc
tagtccttcttctaacatggtctaactcatatcttgtggaatttcaatgg
ataggcgttgagctagaatcgaaataatagaagctatatggaatcgattg
gataccttggaaacaaattttcaatcatattaactgcgagattcatatct
gcaaacggtatctgg
gaattcaatagttgtgcagtcgaaaggctggatgtctcagctgctcttcc
ctgtaagtcagcatcagaaaggagactttaagattagtgaagtaatgtct
caaaagcaggataaataaacatgccagtgagaacaagaacaaatacgcaa
aagtcaaatgcttctttcttctatatttctttataaatgaattctaatga
gaaggctgactaccacccagatttaaagtgggtctttttacgtcacacaa
cttaatcaagacaaatccccctcaagtatgcccagctggttgggttttat
ttaattccagatgaagttgagttaacaaccaagaagagccatcacaggga
taatattgacaggcctacaattttaactacagaaatgagtttaattctca
tgtagagatgtctagggagtaaaatttggctggcacacaagacctatcat
tcagggatgatagaaaatatgccgggattgacaatgaaaggcatgtgtgc
catcccatccgaaatctttattccttctaccctgaagagaacacatgaat
tcccattcatatatccagacaagagttagggaagtggcccatgtatcact
gaaaaaatgcctagaacatgttatcttttattatagactgtggtaaaatt
atttttaaatatatatgctattgccaagaaaaggattaagggaatgaaga
agcaaattgtcatgctagagtctgtgaaaaaccacacacacaaatgtctg
tggtttcctttgcaaatttccttcttcctggtgacctttattttgatttc
ttcccaatatatccactgtatgtattgcctgtttatttcacatgaggcac
acactctcctaattttaagatgggaatggaacaattggatttcagtacat
ttagtctttgttacaattcatttgaatgaagagcagaagtgttttacaga
acacagaaacaaagttgcagtgctctgacatagtagctaaagtaactgaa
caagctcactgcattatttcatcatgtgcatttctttagaaggcagatgg
ttcttgtaatcagtaggagaggcttcagtccttcttcataatagtcagca
ttccttctctcctggacttggacttctatctggaggatgcataaatgtga
ccaaaggcttcttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60147482_60148684
seq2: B6Ng01-047M06.g_68_1234

seq1  GAATTCAATAGTTGTGCAGTCGAAAGGCTGGATGTCTCAGCTGCTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTTGTGCAGTCGAAAGGCTGGATGTCTCAGCTGCTCTTCC  50

seq1  CTGTAAGTCAGCATCAGAAAGGAGACTTTAAGATTAGTGAAGTAATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTCAGCATCAGAAAGGAGACTTTAAGATTAGTGAAGTAATGTCT  100

seq1  CAAAAGCAGGATAAATAAACATGCCAGTGAGAACAAGAACAAATACGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGGATAAATAAACATGCCAGTGAGAACAAGAACAAATACGCAA  150

seq1  AAGTCAAATGCTTCTTTCTTCTATATTTCTTTATAAATGAATTCTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAATGCTTCTTTCTTCTATATTTCTTTATAAATGAATTCTAATGA  200

seq1  GAAGGCTGACTACCACCCAGATTTAAAGTGGGTCTTTTTACGTCACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGACTACCACCCAGATTTAAAGTGGGTCTTTTTACGTCACACAA  250

seq1  CTTAATCAAGACAAATCCCCCTCAAGTATGCCCAGCTGGTTGGGTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAAGACAAATCCCCCTCAAGTATGCCCAGCTGGTTGGGTTTTAT  300

seq1  TTAATTCCAGATGAAGTTGAGTTAACAACCAAGAAGAGCCATCACAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCAGATGAAGTTGAGTTAACAACCAAGAAGAGCCATCACAGGGA  350

seq1  TAATATTGACAGGCCTACAATTTTAACTACAGAAATGAGTTTAATTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGACAGGCCTACAATTTTAACTACAGAAATGAGTTTAATTCTCA  400

seq1  TGTAGAGATGTCTAGGGAGTAAAATTTGGCTGGCACACAAGACCTATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGATGTCTAGGGAGTAAAATTTGGCTGGCACACAAGACCTATCAT  450

seq1  TCAGGGATGATAGAAAATATGCCGGGATTGACAATGAAAGGCATGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGATAGAAAATATGCCGGGATTGACAATGAAAGGCATGTGTGC  500

seq1  CATCCCATCCGAAATCTTTATTCCTTCTACCCTGAAGAGAACACATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATCCGAAATCTTTATTCCTTCTACCCTGAAGAGAACACATGAAT  550

seq1  TCCCATTCATATATCCAGACAAGAGTTAGGGAAGTGGCCCATGTATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCATATATCCAGACAAGAGTTAGGGAAGTGGCCCATGTATCACT  600

seq1  GAAAAAATGCCTAGAACATGTTATCTTTTATTATAGACTGTGGTAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGCCTAGAACATGTTATCTTTTATTATAGACTGTGGTAAAATT  650

seq1  ATTTTTAAATATATATGCTATTGCCAAGAAAAGGATTAAGGGAATGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATATATATGCTATTGCCAAGAAAAGGATTAAGGGAATGAAGA  700

seq1  AGCAAATTGTCATGCTAGAGTCTGTGAAAAACCACACACACAAATGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTGTCATGCTAGAGTCTGTGAAAAACCACACACACAAATGTCTG  750

seq1  TGGTTTCCTTTTGCAAATTTCCTTCTTCCTGGTGACCTTTATTTTGATTT  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCC-TTTGCAAATTTCCTTCTTCCTGGTGACCTTTATTTTGATTT  799

seq1  CTTCCCAATATATCCACTGTATGTATTGCCTGTTTATTTCACATGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATATATCCACTGTATGTATTGCCTGTTTATTTCACATGAGGCA  849

seq1  CACACTCTCCTAATTTTAAGATGGGAATGGAACAATTGGATTTCAGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTCCTAATTTTAAGATGGGAATGGAACAATTGGATTTCAGTACA  899

seq1  TTTAGTCTTTGTTACAAATTCCATTTTGAATGAAAGAAGCAGAAAGTGTT  950
      ||||||||||||||| |||||   ||||||||||   ||||| ||||| |
seq2  TTTAGTCTTTGTTAC-AATTC--ATTTGAATGAA--GAGCAG-AAGTG-T  942

seq1  TTTACAGAAACCACAGATACAAAGTTGCAGTGCTCCTTGACATAGTAGCT  1000
      |||||||||  |||||| |||||||||||||||||  |||||||||||||
seq2  TTTACAGAA--CACAGAAACAAAGTTGCAGTGCTC--TGACATAGTAGCT  988

seq1  AAAAGGTAAACTGAACAAGCCTTCACTTGCATTATTTCAATCATGTTGCC  1050
      |||  || ||||||||||||  |||| ||||||||||| |||||||   |
seq2  AAA--GT-AACTGAACAAGC--TCAC-TGCATTATTTC-ATCATGT--GC  1029

seq1  ATTTCTATAGAAGGCAGATGGTTCCTTGTAATTCAAGGTTAGGAGAGGGC  1100
      |||||| |||||||||||||||| ||||||| |||    ||||||| |||
seq2  ATTTCTTTAGAAGGCAGATGGTT-CTTGTAA-TCA---GTAGGAGA-GGC  1073

seq1  TTCAAGTCCTTCTTCAATAATAAGTTCAGGCATTCTCTTCTCCTCTTGAC  1150
      ||| ||||||||||| ||||||   ||| |||||| ||||||  || |||
seq2  TTC-AGTCCTTCTTC-ATAATA--GTCA-GCATTC-CTTCTCTCCTGGAC  1117

seq1  CTTGACTTCTCATTCCTGAGGATGCATTAACTGTGCACACAAAGGCT--T  1198
       | |||||||   ||  ||||||||| ||| |||| || ||||||||  |
seq2  TTGGACTTCT--ATCTGGAGGATGCA-TAAATGTG-AC-CAAAGGCTTCT  1162

seq1  TCCTT  1203
      |||||
seq2  TCCTT  1167