BAC Information

Click to search

BAC

Clone NameB6Ng01-048N20
Chromosome17 (Build37)
Map Location 77,763,056 - 77,764,197
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624348, LOC545234
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048N20.bB6Ng01-048N20.g
ACCDH873298DH873299
length3151,115
definitionDH873298|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N20, 5' end.DH873299|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cataattagactccaaaaaacaaaacaaaacaaaacaaaaaacaaataat
tctatggcagagttgggggaaaaattaaaggaactgaagaggatggcaac
ctgacagaaagagaaccaactaaatcagacccctcagagatcccagagac
taagtcatgaaccaaagagcaaacatgggttggtccatggccttttgcac
ctatgtagcagagggcttccttgtttggcctcagtgtgaaaggatgtgcc
taatcctgtaaagtcttgatgccccaggaaagagggatgtttaaggggga
atgaggtgtgggttg

gaattcatacaactgcacacctacttgttcagttccatgttgcataagtg
tttggaaaggtggctttgtttccgctaacaggaaacaacagaatccaaca
tagttgcagggaaattggatttttcaaatgttcttaagaaaaaaagaaaa
acagaaaaaaaaaggtttattaaaaaatgagaagccagtgcatatgtgct
ccttgaaaatattgtaaacactgacaatgaagcttcccctctgggcattc
agtcaatttcatgcataaacacaataatagaaacagaccgactcatgaaa
ttgatcactgaatgcttaaaaatatttgtgttatggaacaagcaaaaaaa
ataggaatattttctttctttgtaataagagggagagattttaagtaaga
aatatatgtaactcatagtcaaaaatccagtggaaaatgacaactcagat
acataatagataaaatattaaataaaaatattcaaaaattttaatattag
tatataaaatgactattaaccttaggtggtatttttaagccgacttttga
ctcacatattcctgcttacaggtggcttgttccacatttggcagagccca
agatgtacctgataagaacatgttccctttcagaacttgcatattatttt
gataatagtaccatatttctaattggcaatactgaaatattccttttatg
gagttgattttttgggtagattaaaattaggatctgaacttcttgtttac
ttaaatttccattatgggttggtcacctgcttctcttacagggagttttc
aagtctcttgtttctctctaacaatctcatgggtgtgaattctctaacat
tctctaaaatgataagagctagatggagacagaccaaagagagtccttgc
tggtattacaattgcatgggctttacttgttcatcgcatttagttgacag
tatttgttatttatttcggatagatcagcagagtggtctgagcagagcct
tgccacaaggatgagcctaccaactgcttatctgtagaactagagaccag
atgcatgcttttttaggggaatagttcaaaacgtggtatgacaatctatt
acactcagtaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77763056_77764197
seq2: B6Ng01-048N20.g_66_1180 (reverse)

seq1  GGTGTTAAATGAGTGTAATAGATTTGTCAATAACAATGTTTTCTTTGAAC  50
      |||||| | ||||||||||||| ||||||   || | ||    |||||||
seq2  GGTGTT-ACTGAGTGTAATAGA-TTGTCA--TACCACGT----TTTGAAC  42

seq1  TATTTTCCTTAAAAAGCATTGCTACTTGTCTCTAG-TCTACATGTATAAG  99
      ||||  ||| |||||||| |||  || |||||||| ||||||   |||||
seq2  TATTCCCCTAAAAAAGCA-TGCATCTGGTCTCTAGTTCTACA--GATAAG  89

seq1  CAGTGTGCTAGGCTTCATCCCTGGTGCAAGGCTCTTGCTTCAGACACCTT  149
      |||| || ||||| |||||| ||  ||||||||| ||| |||||| |  |
seq2  CAGT-TGGTAGGC-TCATCCTTGTGGCAAGGCTC-TGC-TCAGAC-CACT  134

seq1  CTGCTTGGTTCCTTATCTGAAATTAAATAACAAATAACTGTCAACTAAAT  199
      |||||  | ||  |||| |||| |||||||||||| ||||||||||||||
seq2  CTGCT--GATC--TATCCGAAA-TAAATAACAAAT-ACTGTCAACTAAAT  178

seq1  GCGATGAACAAGTAAAGCCCATTGCAATTGTAATTACCAGCAAGGACTCT  249
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  GCGATGAACAAGTAAAGCCCA-TGCAATTGTAA-TACCAGCAAGGACTCT  226

seq1  TCTTTTGGTCTGTCTCCATCTTAGCTCTTATTCATTTTAGAGAATGTTAG  299
         ||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  --CTTTGGTCTGTCTCCATC-TAGCTCTTA-TCATTTTAGAGAATGTTAG  272

seq1  AGAATTCACACCCATGAGATTGTTAGAGAGAAACAAGAGACTTGAAAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCACACCCATGAGATTGTTAGAGAGAAACAAGAGACTTGAAAACT  322

seq1  CCCTGTAAGAGAAGCAGGTGACCAACCCATAATGGAAATTTAAGTAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAGAGAAGCAGGTGACCAACCCATAATGGAAATTTAAGTAAACA  372

seq1  AGAAGTTCAGATCCTAATTTTAATCTACCCAAAAAATCAACTCCATAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCAGATCCTAATTTTAATCTACCCAAAAAATCAACTCCATAAAA  422

seq1  GGAATATTTCAGTATTGCCAATTAGAAATATGGTACTATTATCAAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTCAGTATTGCCAATTAGAAATATGGTACTATTATCAAAATAA  472

seq1  TATGCAAGTTCTGAAAGGGAACATGTTCTTATCAGGTACATCTTGGGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGTTCTGAAAGGGAACATGTTCTTATCAGGTACATCTTGGGCTC  522

seq1  TGCCAAATGTGGAACAAGCCACCTGTAAGCAGGAATATGTGAGTCAAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATGTGGAACAAGCCACCTGTAAGCAGGAATATGTGAGTCAAAAG  572

seq1  TCGGCTTAAAAATACCACCTAAGGTTAATAGTCATTTTATATACTAATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTAAAAATACCACCTAAGGTTAATAGTCATTTTATATACTAATAT  622

seq1  TAAAATTTTTGAATATTTTTATTTAATATTTTATCTATTATGTATCTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTGAATATTTTTATTTAATATTTTATCTATTATGTATCTGAG  672

seq1  TTGTCATTTTCCACTGGATTTTTGACTATGAGTTACATATATTTCTTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTCCACTGGATTTTTGACTATGAGTTACATATATTTCTTACT  722

seq1  TAAAATCTCTCCCTCTTATTACAAAGAAAGAAAATATTCCTATTTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTCTCCCTCTTATTACAAAGAAAGAAAATATTCCTATTTTTTTT  772

seq1  GCTTGTTCCATAACACAAATATTTTTAAGCATTCAGTGATCAATTTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCCATAACACAAATATTTTTAAGCATTCAGTGATCAATTTCATG  822

seq1  AGTCGGTCTGTTTCTATTATTGTGTTTATGCATGAAATTGACTGAATGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTCTGTTTCTATTATTGTGTTTATGCATGAAATTGACTGAATGCC  872

seq1  CAGAGGGGAAGCTTCATTGTCAGTGTTTACAATATTTTCAAGGAGCACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGAAGCTTCATTGTCAGTGTTTACAATATTTTCAAGGAGCACAT  922

seq1  ATGCACTGGCTTCTCATTTTTTAATAAACCTTTTTTTTTCTGTTTTTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGGCTTCTCATTTTTTAATAAACCTTTTTTTTTCTGTTTTTCTT  972

seq1  TTTTTCTTAAGAACATTTGAAAAATCCAATTTCCCTGCAACTATGTTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAAGAACATTTGAAAAATCCAATTTCCCTGCAACTATGTTGGA  1022

seq1  TTCTGTTGTTTCCTGTTAGCGGAAACAAAGCCACCTTTCCAAACACTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTTTCCTGTTAGCGGAAACAAAGCCACCTTTCCAAACACTTAT  1072

seq1  GCAACATGGAACTGAACAAGTAGGTGTGCAGTTGTATGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGGAACTGAACAAGTAGGTGTGCAGTTGTATGAATTC  1115


| Home | SequenceCutter | Blast | Download |