BAC Information

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BAC

Clone NameB6Ng01-049C12
Chromosome17 (Build37)
Map Location 66,596,288 - 66,702,898
singlet/doubletdoublet
Overlap gene1110012J17Rik
Upstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875
Downstream geneLOC100043876, Rab12, 9130404H23Rik, Ptprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C12.bB6Ng01-049C12.g
ACCDH873499DH873500
length9091,087
definitionDH873499|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C12, 5' end.DH873500|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,596,288 - 66,597,172)(66,701,786 - 66,702,898)
sequence
gaattcctgtaatgaattttggaatctgagattactcttgggaatccctg
atattggagatccaagggtctgttgctctgcaatactgaagaaaggcctg
gcttctggtctgtgcctattgtggggaacacctattccctcatttggcaa
aagccccttcctcccttctgtggcttggctccaaggtcaggacaggaata
gagaagcaaccctgttggagtgactttttctaagaaaggttattttttcg
aaaggcagggaagagagctgtaacatacaggaaacctgactttctcctgg
actatttggttttctttaggaagtagaccaaactgaatctggagaacatc
tccatctgagtgttgagtcaaagcctaatgtgggttgcagttggtattta
gctccctgccctgttcgagaagcctggctcagttagatacccttgggcaa
ttcactgcaagatgctcataagaatggacctgcatctctgagccacacat
gtttatcctgcacgtacgaggctcttcagagtctgaaacaaaaacaggct
aagatgtatgcagccacgagcatgtccaggcatttcttggagtgaggact
aaggatttcttggccatgagaaagggactaaggactgggaaaaggttgga
aagtccaaaggcttgaggaggggacaagagaagaagctgagaacttctga
gagagtttgtaaaccagcctaccacaagcttgaagatttcaattcagaca
cattcaacaagagcaatccatttttgttgtgttgtattttatttacccat
tgtttagttctttgtttgggagggagtcatgtagccatgtgtctagtagg
gttactgctgtgaacagacaccatgaccagcactctataagacacatgat
gagctgctc
gaattcattcattcattcattaggtcagagccccaaggatgtaattagtt
gaaaggccaccgtggacactcccaggtcagtattacgtaatgtaggtatt
tctcaatccagtgaggttagcaattaaggttattcattacaccctaacag
cacacacacctttcattgcagagatggtagtagacttttctttgtatgca
tgtgcaggggctggggagtgaccttttaaagggatttggagattaaactt
gaaaggggaagttatttcaggttgccttcagggaatttttccccagagta
ctctcttaagatggctacggaagccgcggagatggctgcagcctgaacgg
aattgttaccattagcgaagtaattaccaaaccgagttagaagccactgt
ctgctggtgattgctcctgctgtgggtattgctgagccgtgattagatag
gaccagaaccaagggagttatctggtagctcatcatcttccggtaaacaa
actcagacggatgtggggagagcagagggagttgctttcccgcagcctga
atgattgctctccgcattgcgcacggttggtgcagctgaagtagctgcag
taggcccggagcgatgtgagaaattcaggttttcacgtcacactgagcgg
aggttttagaattcctcagtggctagatttctcagcccacagataacctt
gcttctttcaatccatcattcttataaatgcgaaaagcctcaagagatat
cagtcagttagaaacagtaactcggataaaggggatcatgactccattat
aagtactcactcagcccgtgctaataagaggaccttttgaaaagtatgct
ctgctaagtatgcttagctacggcacggttctatgctaaagtttaatgga
gtgatttgagtttaaatttgcatggaaattttaaatgggaccaggagcac
tagtgacttagaaatgactcagactttgactcagaacagtagaaagagga
gaaagagcactacgactgaagacggagctgtcccgctgatcaccagtgag
tcccttgtatattgatggctccactcaaatctccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_66596288_66597172
seq2: B6Ng01-049C12.b_44_922

seq1  GAATTCCTGTAATGAATTTTGGAATCTGAGATTACTCTTGGGAATCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAATGAATTTTGGAATCTGAGATTACTCTTGGGAATCCCTG  50

seq1  ATATTGGAGATCCAAGGGTCTGTTGCTCTGCAATACTGAAGAAAGGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAGATCCAAGGGTCTGTTGCTCTGCAATACTGAAGAAAGGCCTG  100

seq1  GCTTCTGGTCTGTGCCTATTGTGGGGAACACCTATTCCCTCATTTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGTCTGTGCCTATTGTGGGGAACACCTATTCCCTCATTTGGCAA  150

seq1  AAGCCCCTTCCTCCCTTCTGTGGCTTGGCTCCAAGGTCAGGACAGGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTTCCTCCCTTCTGTGGCTTGGCTCCAAGGTCAGGACAGGAATA  200

seq1  GAGAAGCAACCCTGTTGGAGTGACTTTTTCTAAGAAAGGTTATTTTTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAACCCTGTTGGAGTGACTTTTTCTAAGAAAGGTTATTTTTTCG  250

seq1  AAAGGCAGGGAAGAGAGCTGTAACATACAGGAAACCTGACTTTCTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGGGAAGAGAGCTGTAACATACAGGAAACCTGACTTTCTCCTGG  300

seq1  ACTATTTGGTTTTCTTTAGGAAGTAGACCAAACTGAATCTGGAGAACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGGTTTTCTTTAGGAAGTAGACCAAACTGAATCTGGAGAACATC  350

seq1  TCCATCTGAGTGTTGAGTCAAAGCCTAATGTGGGTTGCAGTTGGTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGAGTGTTGAGTCAAAGCCTAATGTGGGTTGCAGTTGGTATTTA  400

seq1  GCTCCCTGCCCTGTTCGAGAAGCCTGGCTCAGTTAGATACCCTTGGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGCCCTGTTCGAGAAGCCTGGCTCAGTTAGATACCCTTGGGCAA  450

seq1  TTCACTGCAAGATGCTCATAAGAATGGACCTGCATCTCTGAGCCACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCAAGATGCTCATAAGAATGGACCTGCATCTCTGAGCCACACAT  500

seq1  GTTTATCCTGCACGTACGAGGCTCTTCAGAGTCTGAAACAAAAACAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCTGCACGTACGAGGCTCTTCAGAGTCTGAAACAAAAACAGGCT  550

seq1  AAGATGTATGCAGCCACGAGCATGTCCAGGCATTTCTTGGAGTGAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTATGCAGCCACGAGCATGTCCAGGCATTTCTTGGAGTGAGGACT  600

seq1  AAGGATTTCTTGGCCATGAGAAAGGGACTAAGGACTGGGAAAAGGTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTCTTGGCCATGAGAAAGGGACTAAGGACTGGGAAAAGGTTGGA  650

seq1  AAGTCCAAAGGCTTGAGGAGGGGACAAGAGAAGAAGCTGAGAACTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAAGGCTTGAGGAGGGGACAAGAGAAGAAGCTGAGAACTTCTGA  700

seq1  GAGAGTTTGTAAACCAGCCTACCACAAGCTTGAAGATTTCAATTCAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTGTAAACCAGCCTACCACAAGCTTGAAGATTTCAATTCAGACA  750

seq1  CATTCAACAAGAGCAATCCATTTTTGTTGTTGTTGTATTTTATTTACCCA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTCAACAAGAGCAATCCATTTTTGTTG-TGTTGTATTTTATTTACCCA  799

seq1  TTGTTTAGTTCTTTTGTTTGGGAGGGAGTCATGTAGCCATGTGTCTTAGT  850
      ||||||||||| ||||||||||||||||||||||||||||||||| ||| 
seq2  TTGTTTAGTTC-TTTGTTTGGGAGGGAGTCATGTAGCCATGTGTC-TAG-  846

seq1  TAGGGTTTTACTGCTGTGAACAGACACCATGACCA  885
      |||||  ||||||||||||||||||||||||||||
seq2  TAGGG--TTACTGCTGTGAACAGACACCATGACCA  879

seq1: chr17_66701786_66702898
seq2: B6Ng01-049C12.g_68_1154 (reverse)

seq1  TTTGGAGAATTTTGAAGTGGAGCCATATCAAATATTAGCAAGGTGACTCA  50
      ||||||||  |||| |||||||||||    |||||   ||||| ||||||
seq2  TTTGGAGA--TTTG-AGTGGAGCCAT---CAATAT--ACAAGG-GACTCA  41

seq1  CTGGTGATCAGCGGGGACAGCCTCCGCTCCTTCAGTCTGTAGTGCTCTTT  100
      |||||||||||| ||||||| |||||   |||||||| ||||||||||||
seq2  CTGGTGATCAGC-GGGACAG-CTCCG--TCTTCAGTC-GTAGTGCTCTTT  86

seq1  CTCCTTCCCTTTCTACTGTTTCTGAGTCAAAGGTTCTGGGTCATTTCTAA  150
      |||||   |||||||||| |||||||||||||  |||| |||||||||||
seq2  CTCCT---CTTTCTACTG-TTCTGAGTCAAAG--TCTGAGTCATTTCTAA  130

seq1  GTCACTTAGTGCTTCCTGGGTCCCATTTAAAATTTCCATGCAAATTTAAA  200
      ||||| |||||| |||| ||||||||||||||||||||||||||||||||
seq2  GTCAC-TAGTGC-TCCT-GGTCCCATTTAAAATTTCCATGCAAATTTAAA  177

seq1  CTCAAATTCACCTCCATTAAACTTTAGCATAGGAACCGTGCCGTAGCTAA  250
      |||||| ||| |||||||||||||||||||| ||||||||||||||||||
seq2  CTCAAA-TCA-CTCCATTAAACTTTAGCATA-GAACCGTGCCGTAGCTAA  224

seq1  GCATACTTAGCAGAGCATACTTTTCAAAAGGTCCTCTTATTAGCACGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTAGCAGAGCATACTTTTCAAAAGGTCCTCTTATTAGCACGGGC  274

seq1  TGAGTGAGTACTTATAATGGAGTCATGATCCCCTTTATCCGAGTTACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTACTTATAATGGAGTCATGATCCCCTTTATCCGAGTTACTGT  324

seq1  TTCTAACTGACTGATATCTCTTGAGGCTTTTCGCATTTATAAGAATGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTGACTGATATCTCTTGAGGCTTTTCGCATTTATAAGAATGATG  374

seq1  GATTGAAAGAAGCAAGGTTATCTGTGGGCTGAGAAATCTAGCCACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAGAAGCAAGGTTATCTGTGGGCTGAGAAATCTAGCCACTGAGG  424

seq1  AATTCTAAAACCTCCGCTCAGTGTGACGTGAAAACCTGAATTTCTCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAAACCTCCGCTCAGTGTGACGTGAAAACCTGAATTTCTCACAT  474

seq1  CGCTCCGGGCCTACTGCAGCTACTTCAGCTGCACCAACCGTGCGCAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCGGGCCTACTGCAGCTACTTCAGCTGCACCAACCGTGCGCAATGC  524

seq1  GGAGAGCAATCATTCAGGCTGCGGGAAAGCAACTCCCTCTGCTCTCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAATCATTCAGGCTGCGGGAAAGCAACTCCCTCTGCTCTCCCCA  574

seq1  CATCCGTCTGAGTTTGTTTACCGGAAGATGATGAGCTACCAGATAACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTCTGAGTTTGTTTACCGGAAGATGATGAGCTACCAGATAACTCC  624

seq1  CTTGGTTCTGGTCCTATCTAATCACGGCTCAGCAATACCCACAGCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCTGGTCCTATCTAATCACGGCTCAGCAATACCCACAGCAGGAG  674

seq1  CAATCACCAGCAGACAGTGGCTTCTAACTCGGTTTGGTAATTACTTCGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCAGCAGACAGTGGCTTCTAACTCGGTTTGGTAATTACTTCGCT  724

seq1  AATGGTAACAATTCCGTTCAGGCTGCAGCCATCTCCGCGGCTTCCGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAACAATTCCGTTCAGGCTGCAGCCATCTCCGCGGCTTCCGTAGC  774

seq1  CATCTTAAGAGAGTACTCTGGGGAAAAATTCCCTGAAGGCAACCTGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAGAGAGTACTCTGGGGAAAAATTCCCTGAAGGCAACCTGAAAT  824

seq1  AACTTCCCCTTTCAAGTTTAATCTCCAAATCCCTTTAAAAGGTCACTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCTTTCAAGTTTAATCTCCAAATCCCTTTAAAAGGTCACTCCC  874

seq1  CAGCCCCTGCACATGCATACAAAGAAAAGTCTACTACCATCTCTGCAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGCACATGCATACAAAGAAAAGTCTACTACCATCTCTGCAATG  924

seq1  AAAGGTGTGTGTGCTGTTAGGGTGTAATGAATAACCTTAATTGCTAACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGTGCTGTTAGGGTGTAATGAATAACCTTAATTGCTAACCT  974

seq1  CACTGGATTGAGAAATACCTACATTACGTAATACTGACCTGGGAGTGTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATTGAGAAATACCTACATTACGTAATACTGACCTGGGAGTGTCC  1024

seq1  ACGGTGGCCTTTCAACTAATTACATCCTTGGGGCTCTGACCTAATGAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGCCTTTCAACTAATTACATCCTTGGGGCTCTGACCTAATGAATG  1074

seq1  AATGAATGAATTC  1113
      |||||||||||||
seq2  AATGAATGAATTC  1087