BAC Information

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BAC

Clone NameB6Ng01-050N17
Chromosome17 (Build37)
Map Location 81,467,770 - 81,468,692
singlet/doubletsinglet
Overlap genenone
Upstream geneGalm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2
Downstream geneLOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050N17.bB6Ng01-050N17.g
ACCDH874679DH874680
length9131,200
definitionDH874679|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N17, 5' end.DH874680|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacatcagtgatgctcgttcttgcaccattggcttatataacat
tttgttcctttattatttacttgttcatacatatttattgaatacatggc
aatatgtcacgtaatatgacaagatcccagtcctgggacaacctttaatt
tagggtgtaggtaatgtggaaggggctggaatgccaagagaagcatataa
aaatttttaatgcaatgccatgtctgggggactaagccaagcgactgggc
ctggcatactgtagctacttaataagaataagcgaccttgaatgaatgac
gtagttcagaagttccatgagcctttgtctctcccacctgggtggttccc
tgccttaggggagttttgtagccgggttatcctgatggaacagagggttt
accggtgagaattagataagaagctcatgtgactgacagctaacttggaa
ggaaaggttttctccttgggacagcagtagcggtatctgttggaggcatt
cctgtcctagttatgatgttgttgtttttgtttgttttgttttttcagtt
tgttcagtgatgtgagtcttataaagttttgttttgttttctttaaaaag
aaaagctctctttttttttataatcagataaaatgagcatctattttttc
gtaacaaagagccctgactgatgggcgtggatctactctcctactctttc
tgggcaggagctgctaacttccctgtctagttgcccctcccctttccctc
tgctcccaccctccctgctttattcctctctcttcttattctctgtgagc
tcatggaggatgacagacatatagtgaggtgatctacaagagatgtaggc
tcatcttgaattctagcacgtaaagggcatttgctatgctaccatatgca
ttacatagcaaca
gaattccctaccagccaacacacagctaccacactctccaaagaaaaaga
gggcaaaagccaaagaacaaaacacatcccccaacaaagataagactaga
tatcagcacctagaattacaaccaacccaaacccagatgcctagaagcca
acataaaaacacaatcaataacagccaggacaatatggctccactagagc
ccagcaatcctgccacagcaggccctgaaaattccaaaatagctgaatca
ttagaaacaatggagcttaaaatatgatatggcatagatcgttaaagatg
aaatgggtaaattccttaaagaagtctatggaaacacaaacaggtcttag
atgaataaaacagttcaagatctgaaagtggaaatggaataaataaagaa
aacccaaactggaggaaatctgaaaatgaaattttaggaactcaaacagg
agccacagaggcaagcttcaccaatagaatataagagatggaaaaaagaa
tctcagacattgaagatagagtagacaaaatggatgcattggtcaaagaa
aatgttaaatccaaaaaaaaatggtggcacaaaacctccagagaatctga
agcactataaaaatactaagaataatggggatagaggaaggcaacgaaac
ccagattaaagacacagaaaatattttcaacaaaatcatagaagaaattt
ccctaatctaaagaagagatatctatcaaggtatatgtagtatacagatc
accaaatacaatggaccagaaaacaatccacctcaacacataatactcaa
acattaagcatacagaacaaagaagaatttaaaactgcaggagaaagacc
agtaaatataaggcaacctatacgattacacacaacttctcgatgagact
ttaaagcagaggcctgaagaggctctacagactctacagaccacagatgc
atcatatcagaaaacttttcattacagtagatgaaaaacagaattactag
taaacacgtttaaaaaatctattaaacagctacgagggctgagaaattcg
ctgaaagtaaaccaccagaaaaccaggagtagcatcgacagtaatcaaga
gggacccaccaccaactagaatctttacacaacacaatacggatccagcg
tctcgtaacttcacctatgctgatctacaagcgaggattacgattatcgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_81467770_81468692
seq2: B6Ng01-050N17.b_47_959

seq1  GAATTCCACATCAGTGATGCTCGTTCTTGCACCATTGGCTTATATAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCAGTGATGCTCGTTCTTGCACCATTGGCTTATATAACAT  50

seq1  TTTGTTCCTTTATTATTTACTTGTTCATACATATTTATTGAATACATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTTTATTATTTACTTGTTCATACATATTTATTGAATACATGGC  100

seq1  AATATGTCACGTAATATGACAAGATCCCAGTCCTGGGACAACCTTTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCACGTAATATGACAAGATCCCAGTCCTGGGACAACCTTTAATT  150

seq1  TAGGGTGTAGGTAATGTGGAAGGGGCTGGAATGCCAAGAGAAGCATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTAGGTAATGTGGAAGGGGCTGGAATGCCAAGAGAAGCATATAA  200

seq1  AAATTTTTAATGCAATGCCATGTCTGGGGGACTAAGCCAAGCGACTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAATGCAATGCCATGTCTGGGGGACTAAGCCAAGCGACTGGGC  250

seq1  CTGGCATACTGTAGCTACTTAATAAGAATAAGCGACCTTGAATGAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATACTGTAGCTACTTAATAAGAATAAGCGACCTTGAATGAATGAC  300

seq1  GTAGTTCAGAAGTTCCATGAGCCTTTGTCTCTCCCACCTGGGTGGTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAGAAGTTCCATGAGCCTTTGTCTCTCCCACCTGGGTGGTTCCC  350

seq1  TGCCTTAGGGGAGTTTTGTAGCCGGGTTATCCTGATGGAACAGAGGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGGGGAGTTTTGTAGCCGGGTTATCCTGATGGAACAGAGGGTTT  400

seq1  ACCGGTGAGAATTAGATAAGAAGCTCATGTGACTGACAGCTAACTTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTGAGAATTAGATAAGAAGCTCATGTGACTGACAGCTAACTTGGAA  450

seq1  GGAAAGGTTTTCTCCTTGGGACAGCAGTAGCGGTATCTGTTGGAGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTTTTCTCCTTGGGACAGCAGTAGCGGTATCTGTTGGAGGCATT  500

seq1  CCTGTCCTAGTTATGATGTTGTTGTTTTTGTTTGTTTTGTTTTTTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTAGTTATGATGTTGTTGTTTTTGTTTGTTTTGTTTTTTCAGTT  550

seq1  TGTTCAGTGATGTGAGTCTTATAAAGTTTTGTTTTGTTTTCTTTAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTGATGTGAGTCTTATAAAGTTTTGTTTTGTTTTCTTTAAAAAG  600

seq1  AAAAGCTCTCTTTTTTTTTATAATCAGATAAAATGAGCATCTA-TTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAAGCTCTCTTTTTTTTTATAATCAGATAAAATGAGCATCTATTTTTTC  650

seq1  GTAACAAAGAGCCCTGACTGATGGGCGTGGATCTACTCTCCTACTCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAGAGCCCTGACTGATGGGCGTGGATCTACTCTCCTACTCTTTC  700

seq1  TGGGCAGGAGCTGCTAACTTCCCTGTCTTAGTTGCCCCTCCCCTTTCCCC  749
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  TGGGCAGGAGCTGCTAACTTCCCTGTC-TAGTTGCCCCTCCCCTTT-CCC  748

seq1  TCTGCTCCCCACCCCTCCCCTGCCTTTTATTCCTCTCTCTTCTTATTCCT  799
      |||||| |||||||   ||||||  |||||||||||||||||||||| ||
seq2  TCTGCT-CCCACCC--TCCCTGC--TTTATTCCTCTCTCTTCTTATT-CT  792

seq1  CTGTGAGCTCCATGGAGGAATGACAGACATATAGTGA-GTGATCTACAAA  848
      ||||||||| |||||||| |||||||||||||||||| ||||||||| ||
seq2  CTGTGAGCT-CATGGAGG-ATGACAGACATATAGTGAGGTGATCTAC-AA  839

seq1  GAGAATGTAGGTCCATCCTGAAATTTTAGCAGGTAAA-GGCATTTGCTAT  897
      ||| |||||||  |||| || |||| ||||| ||||| ||||||||||||
seq2  GAG-ATGTAGGCTCATCTTG-AATTCTAGCACGTAAAGGGCATTTGCTAT  887

seq1  GCCTACATATGCATACAATAGCAACA  923
      ||   |||||||||   |||||||||
seq2  GCTACCATATGCATTACATAGCAACA  913