BAC Information

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BAC

Clone NameB6Ng01-052D09
Chromosome17 (Build37)
Map Location 9,503,789 - 9,593,842
singlet/doubletdoublet
Overlap geneEG667170, LOC666143
Upstream geneSft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a, 1700010I14Rik, EG667165
Downstream gene4932702K14Rik, Qk, LOC675815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D09.bB6Ng01-052D09.g
ACCDH875633DH875634
length6931,060
definitionDH875633|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D09, 5' end.DH875634|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,593,145 - 9,593,842)(9,503,789 - 9,504,854)
sequence
gaattccaagaatggtttggggagtgggggctcctggaaaaggataattt
gatttgtattatgttttgctatggggcttctgattaaacaggagacagaa
actaatcacatagggcactgaccacaaagctacagctgcaacatcctcac
tggagaccagaaatgaagagttctagttcttagttcattgtgatctctga
ccctgatgcaagtacggacatgatcggaacggcaaagagaatgtggatgg
ctcagctcagtccccaagcttcacctcagttcctgccacagtgcccccat
gctgtaaaagacttcttgcctcggagttcaatggcagcccaacctacagg
gctctgttctctctctctctctctctctctctctctctctctctctctct
ctctcacttctacctgtggtactagaataaatctctcactaaaacacacc
ctttatggtctgagaattacacttttgaaaatctctacacaaatgtgcct
gtgtgtgtgtggctgtgggggcgtatgcaattttacgggaccctacacac
tctacactcttaatctatgttcttgcgtatctgatgagaaacctcctcta
agccatgggacctgaacttttcttgtgtcactttgacatgaggcatgtct
ctgacgccggggtctggagagcttatacctgcaacttgacttt
gaattctgcagacgagcctgcttcagtgtgaggctcactgcattcttgtt
acatatgtgctgtgtttattttgtctctgaatgatgtagctcagcggtat
ttggcctctgggtaagaagaaactattgcattagctttggctataaattg
gtaccactgggatagacagctatgcttgttattgtgtgattgttttcaca
aggtattgtattgtagtcggaatatcacttgtgctggctagatttatgtc
aactttatacaactcagtgtcacctgggaaaaaggagtcttcattgagaa
aattcctccataggattgacctgtggacaagtctgtaggacatgtttttg
actgataattgaaatgggaggattcagctcactgtgggtaaagcagttcc
tgggaatgggtcttggatagcataaggaaaggaggctgggaaagtcacgc
tttgctccagttcctgctctggtttctcttcataaaagactatgataggg
atacataagcagatagaatccctttcctccatgtgttgttttgggtcata
gtgggattttttgttttttgatatttttaaaatttcatttgctatagaaa
ccccaactaaaaattcactcatcacgacactagctcagtaggtatcgttt
ttgttgtctgggtcagttagcctcaacatctgtgtagtgattatgagagt
gaatggttttgatccctgtacatttcagttaatttctcacttaaaagaat
aaatgaaacccttgggcacagaggacacctgcactttgcaacctttctgt
cttgctggtgtacattaattagtgttgtaaaagtgacacgtgacaggaag
tccaggtgacacaatagaattcatcatcaatactggggaaatgaaactag
tattatatgtccttatgtagagacatacacgtagagtcttgagtgatgtt
atgtactttaatgaatttagtttcattacatcaatacaaatttatgcttt
gaatattgaaaaacagaacttgatgaccaacctctgggtcctgaaagtgg
ttatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9593145_9593842
seq2: B6Ng01-052D09.b_46_738 (reverse)

seq1  AAAGTGCAAGTTGCAGGTATAAGCTCTCGTGAACCCTGCCTCAGAGACAT  50
      ||||| ||||||||||||||||||||||  || ||| || ||||||||||
seq2  AAAGT-CAAGTTGCAGGTATAAGCTCTCCAGACCCCGGCGTCAGAGACAT  49

seq1  GCCTCATGTGAAAGTGACACAAGAAAAGTTCTAGGACCCCTGGGATTAGA  100
      ||||||||| ||||||||||||||||||||| ||| ||| | || |||||
seq2  GCCTCATGTCAAAGTGACACAAGAAAAGTTC-AGGTCCCAT-GGCTTAGA  97

seq1  AGAGGTTTTCTCCTCTGATACTGAGTGAGCATAGCTTGAGAGTGTAGAGT  150
       |||| |||||| || ||||| |   || ||||| || ||||||||||||
seq2  GGAGG-TTTCTCATCAGATAC-GCAAGAACATAGATTAAGAGTGTAGAGT  145

seq1  GTTTGGGGTCCAGAAAAATTGAATAAGCCACCAAAGCCACACTGAGCCAG  200
      || | |||||| | ||||||| ||| ||| ||| ||||||||  |  |||
seq2  GTGTAGGGTCCCGTAAAATTGCATACGCCCCCACAGCCACACACACACAG  195

seq1  GGGCCTTTGTCTAGTGAATTTAAAAAGTGAAATTCACAGACCATAAAGGG  250
      |  | ||||| ||| || ||| ||||||| ||||| ||||||||||||||
seq2  GCACATTTGTGTAGAGATTTTCAAAAGTGTAATTCTCAGACCATAAAGGG  245

seq1  TATGTTTTAGAGAGAGATTTATTCTAGTACCACAGGTAGAAGAGAGAGAG  300
      | |||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTTTTAGTGAGAGATTTATTCTAGTACCACAGGTAGAAGTGAGAGAG  295

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGAGCCC  345

seq1  TGTAGGTTGGGCTGCCATTGAACTCCGAGGCAAGAAGTCTTTTACAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTGGGCTGCCATTGAACTCCGAGGCAAGAAGTCTTTTACAGCAT  395

seq1  GGGGGCACTGTGGCAGGAACTGAGGTGAAGCTTGGGGACTGAGCTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCACTGTGGCAGGAACTGAGGTGAAGCTTGGGGACTGAGCTGAGCC  445

seq1  ATCCACATTCTCTTTGCCGTTCCGATCATGTCCGTACTTGCATCAGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATTCTCTTTGCCGTTCCGATCATGTCCGTACTTGCATCAGGGTC  495

seq1  AGAGATCACAATGAACTAAGAACTAGAACTCTTCATTTCTGGTCTCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCACAATGAACTAAGAACTAGAACTCTTCATTTCTGGTCTCCAGT  545

seq1  GAGGATGTTGCAGCTGTAGCTTTGTGGTCAGTGCCCTATGTGATTAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTTGCAGCTGTAGCTTTGTGGTCAGTGCCCTATGTGATTAGTTT  595

seq1  CTGTCTCCTGTTTAATCAGAAGCCCCATAGCAAAACATAATACAAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTGTTTAATCAGAAGCCCCATAGCAAAACATAATACAAATCAA  645

seq1  ATTATCCTTTTCCAGGAGCCCCCACTCCCCAAACCATTCTTGGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTTTCCAGGAGCCCCCACTCCCCAAACCATTCTTGGAATTC  693

seq1: chr17_9503789_9504854
seq2: B6Ng01-052D09.g_67_1126

seq1  GAATTCTGCAGACGAGCCTGCTTCAGTGTGAGGCTCACTGCATTCTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGACGAGCCTGCTTCAGTGTGAGGCTCACTGCATTCTTGTT  50

seq1  ACATATGTGCTGTGTTTATTTTGTCTCTGAATGATGTAGCTCAGCGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGCTGTGTTTATTTTGTCTCTGAATGATGTAGCTCAGCGGTAT  100

seq1  TTGGCCTCTGGGTAAGAAGAAACTATTGCATTAGCTTTGGCTATAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCTGGGTAAGAAGAAACTATTGCATTAGCTTTGGCTATAAATTG  150

seq1  GTACCACTGGGATAGACAGCTATGCTTGTTATTGTGTGATTGTTTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTGGGATAGACAGCTATGCTTGTTATTGTGTGATTGTTTTCACA  200

seq1  AGGTATTGTATTGTAGTCGGAATATCACTTGTGCTGGCTAGATTTATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGTATTGTAGTCGGAATATCACTTGTGCTGGCTAGATTTATGTC  250

seq1  AACTTTATACAACTCAGTGTCACCTGGGAAAAAGGAGTCTTCATTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATACAACTCAGTGTCACCTGGGAAAAAGGAGTCTTCATTGAGAA  300

seq1  AATTCCTCCATAGGATTGACCTGTGGACAAGTCTGTAGGACATGTTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCCATAGGATTGACCTGTGGACAAGTCTGTAGGACATGTTTTTG  350

seq1  ACTGATAATTGAAATGGGAGGATTCAGCTCACTGTGGGTAAAGCAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAATTGAAATGGGAGGATTCAGCTCACTGTGGGTAAAGCAGTTCC  400

seq1  TGGGAATGGGTCTTGGATAGCATAAGGAAAGGAGGCTGGGAAAGTCACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGGGTCTTGGATAGCATAAGGAAAGGAGGCTGGGAAAGTCACGC  450

seq1  TTTGCTCCAGTTCCTGCTCTGGTTTCTCTTCATAAAAGACTATGATAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCAGTTCCTGCTCTGGTTTCTCTTCATAAAAGACTATGATAGGG  500

seq1  ATACATAAGCAGATAGAATCCCTTTCCTCCATGTGTTGTTTTGGGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAGCAGATAGAATCCCTTTCCTCCATGTGTTGTTTTGGGTCATA  550

seq1  GTGGGATTTTTTGTTTTTTGATATTTTTAAAATTTCATTTGCTATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTTTTTGTTTTTTGATATTTTTAAAATTTCATTTGCTATAGAAA  600

seq1  CCCCAACTAAAAATTCACTCATCACGACACTAGCTCAGTAGGTATCGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTAAAAATTCACTCATCACGACACTAGCTCAGTAGGTATCGTTT  650

seq1  TTGTTGTCTGGGTCAGTTAGCCTCAACATCTGTGTAGTGATTATGAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTGGGTCAGTTAGCCTCAACATCTGTGTAGTGATTATGAGAGT  700

seq1  GAATGGTTTTGATCCCTGTACATTTCAGTTAATTTCTCACTTAAAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTTTGATCCCTGTACATTTCAGTTAATTTCTCACTTAAAAGAAT  750

seq1  AAATGAAACCCTTGGGCACAGAGGACACCTGCAC-TTGCAACCTTTCTGT  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAATGAAACCCTTGGGCACAGAGGACACCTGCACTTTGCAACCTTTCTGT  800

seq1  CTTGCTGGTGTACATTAATTAGTGTTGTAAAAGTGACACGTGACAGGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTGTACATTAATTAGTGTTGTAAAAGTGACACGTGACAGGAAG  850

seq1  TCCAGGTGACACAATAGAATTCATCATCAATACTGGGGAAATGAAACTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCAGGTGACACAATAGAATTCATCATCAATACTGGGGAAATGAAACTA-  899

seq1  GTATTAATATGTCCTTATGTAGAGAACATACACGTAGAGTCTTGAAGTGA  949
      ||||| |||||||||||||||||| ||||||||||||||||||| |||||
seq2  GTATT-ATATGTCCTTATGTAGAG-ACATACACGTAGAGTCTTG-AGTGA  946

seq1  TGTGTATGTACTTAAATGAATTTAAGTTTCATTACATCAAATACAAATTT  999
      ||| ||||||||| ||||||||| |||||||||||||| |||||||||||
seq2  TGT-TATGTACTTTAATGAATTT-AGTTTCATTACATC-AATACAAATTT  993

seq1  AATTGCTTTGAATATTGAAAAACAGA--CTGATGACCAAACTCTGGGTCC  1047
      |  |||||||||||||||||||||||   |||||||||| ||||||||||
seq2  A--TGCTTTGAATATTGAAAAACAGAACTTGATGACCAACCTCTGGGTCC  1041

seq1  TGGAAGTGTGTATGTGTGT  1066
      || |||||  |||||||||
seq2  TGAAAGTGGTTATGTGTGT  1060