BAC Information

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BAC

Clone NameB6Ng01-052F10
Chromosome17 (Build37)
Map Location 46,138,632 - 46,296,563
singlet/doubletdoublet
Overlap geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneGtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F10.bB6Ng01-052F10.g
ACCDH875723DH875724
length1,125646
definitionDH875723|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F10, 5' end.DH875724|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,138,632 - 46,139,747)(46,295,921 - 46,296,563)
sequence
gaattcaaaggaggctgaaatgaggaagaaaatgtgccagtggggagcag
tcccaggtacagtgctttggctttgggctctgcagcccacgtgcagccgg
ctgggcctctcctttgcacagagagccaccggtgtggccagggagaaagc
ccaggagatacctattcttgtactcccgtagactcctgcctgcgtgtctt
ctgagcagcaaacgatccacactacagaattttggtatggtttctttttt
aactcaaggaacaatttcttcttcttggaagaaaagtcccagctgggatc
atgtgcagaaccgcttcccaacactatattctgcattggtcgtaggcatt
aggccctgcagacaagcttctgccgggcccctgcaactcaggataacacg
gagaatctgtctgttggcagtcacagagggactatgctgggcaaaaccaa
cctcttctcccagggccacctcctgcgagggtcctacctgtggagttgat
ttttctcatcaacctgacacagcctacagccaccaggaaaagggaggctc
attgaggaattgcctagaccagattggcctgtggcatgtctgggggcatc
atcttgcctgctaattgatatagaagaactcagcctactgtgggcagtgt
catccttcaacaaacagtccagagctgtataagaaagcacaagccaggga
gcagccagggatccagtaggcaagcagcatccttctgtgatccctactct
gactttgctcaaggatgaggggctgcaacctggaagtgcaagatgaaata
aaccctttccttccctaagttgcctttgatcatagagcttgccacaacag
cagaaagcagcaaggacatcacataggaacttccagccctaaccttcttt
gggcttctgctagtcctgggcccatgtcttgctgctttcccgggccttct
ctggacccttccagccagggccctcccttctctttggtccttctccaccc
cacccctacctcaatgtctgggactagaacaattgtccttgcacatgctg
gatgaagagcaagcccaccctctacctaaccctcttcatattggaacccg
gagaatcatcaagttgccaaagctc
gaattcagtgagacatctcaaaggatgggaatagaaaggaagagacatcc
ccaccccacccacacattatcaccacaaacaggccgggttctctcaccag
ccagaaaccactgcactcaactgataactattttttaaatatccacggat
cttccagcagtcaccctttaacacacaattccatcccagccaattctcct
taatggataccttcctttaagaaagggtggggcatgatataacccattct
tgaacagcctggcctacctacagagagaagtgagggctggcagaggagag
aggccacaggatgcctgctgggagaccagggtcctggggagtggaggtgg
tataagtggccagtttcctagacaggttgtttacgaggtggctgcctata
ggatgtatatagtgtgtgcttatatacacatcacatgcaaatatttttcc
tggcttgtagtgagtcacttgcttttacatctagtacctttgtatgaata
tgcattttgtgatgtcactttcatgtgctctgacttagagcaaccttccc
ctctgctttcttgcttgcctgtcacccttaagccaacctcattatgacta
tatatatatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46138632_46139747
seq2: B6Ng01-052F10.b_43_1167

seq1  GAATTCAAAGGAGGCTGAAATGAGGAAGAAAATGTGCCAGTGGGGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAGGCTGAAATGAGGAAGAAAATGTGCCAGTGGGGAGCAG  50

seq1  TCCCAGGTACAGTGCTTTGGCTTTGGGCTCTGCAGCCCACGTGCAGCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTACAGTGCTTTGGCTTTGGGCTCTGCAGCCCACGTGCAGCCGG  100

seq1  CTGGGCCTCTCCTTTGCACAGAGAGCCACCGGTGTGGCCAGGGAGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCTCCTTTGCACAGAGAGCCACCGGTGTGGCCAGGGAGAAAGC  150

seq1  CCAGGAGATACCTATTCTTGTACTCCCGTAGACTCCTGCCTGCGTGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGATACCTATTCTTGTACTCCCGTAGACTCCTGCCTGCGTGTCTT  200

seq1  CTGAGCAGCAAACGATCCACACTACAGAATTTTGGTATGGTTTCTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCAAACGATCCACACTACAGAATTTTGGTATGGTTTCTTTTTT  250

seq1  AACTCAAGGAACAATTTCTTCTTCTTGGAAGAAAAGTCCCAGCTGGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGGAACAATTTCTTCTTCTTGGAAGAAAAGTCCCAGCTGGGATC  300

seq1  ATGTGCAGAACCGCTTCCCAACACTATATTCTGCATTGGTCGTAGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGAACCGCTTCCCAACACTATATTCTGCATTGGTCGTAGGCATT  350

seq1  AGGCCCTGCAGACAAGCTTCTGCCGGGCCCCTGCAACTCAGGATAACACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGCAGACAAGCTTCTGCCGGGCCCCTGCAACTCAGGATAACACG  400

seq1  GAGAATCTGTCTGTTGGCAGTCACAGAGGGACTATGCTGGGCAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTGTCTGTTGGCAGTCACAGAGGGACTATGCTGGGCAAAACCAA  450

seq1  CCTCTTCTCCCAGGGCCACCTCCTGCGAGGGTCCTACCTGTGGAGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTCCCAGGGCCACCTCCTGCGAGGGTCCTACCTGTGGAGTTGAT  500

seq1  TTTTCTCATCAACCTGACACAGCCTACAGCCACCAGGAAAAGGGAGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATCAACCTGACACAGCCTACAGCCACCAGGAAAAGGGAGGCTC  550

seq1  ATTGAGGAATTGCCTAGACCAGATTGGCCTGTGGCATGTCTGGGGGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAATTGCCTAGACCAGATTGGCCTGTGGCATGTCTGGGGGCATC  600

seq1  ATCTTGCCTGCTAATTGATATAGAAGAACTCAGCCTACTGTGGGCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTGCTAATTGATATAGAAGAACTCAGCCTACTGTGGGCAGTGT  650

seq1  CATCCTTCAACAAACAGTCCAGAGCTGTATAAGAAAGCACAAGCCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCAACAAACAGTCCAGAGCTGTATAAGAAAGCACAAGCCAGGGA  700

seq1  GCAGCCAGGGATCCAGTAGGCAAGCAGCATCCTTCTGTGATCCCTACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGGGATCCAGTAGGCAAGCAGCATCCTTCTGTGATCCCTACTCT  750

seq1  GACTTTGCTCAAGGATGAGGGGCTGCAACCTGGAAGTGCAAGATGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCTCAAGGATGAGGGGCTGCAACCTGGAAGTGCAAGATGAAATA  800

seq1  AACCCTTTCCTTCCCTAAGTTGCCTTTGATCATAGAGCTTGCCACAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCCTTCCCTAAGTTGCCTTTGATCATAGAGCTTGCCACAACAG  850

seq1  CAGAAAGCAGCAAGGACATCACATAGGAACTTCCAGCCCTAACCCTCTTT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGAAAGCAGCAAGGACATCACATAGGAACTTCCAGCCCTAACCTTCTTT  900

seq1  GGGCTTCTGCTAGTCCTGGCCCCATGTC-TGCTGCTTTCCGGGGCC-TCT  948
      ||||||||||||||||||| |||||||| ||||||||||| ||||| |||
seq2  GGGCTTCTGCTAGTCCTGGGCCCATGTCTTGCTGCTTTCCCGGGCCTTCT  950

seq1  CT-GACCCTTCCAGCCA-GGCCCTCCC-TCTCTTTGGTCCTTCTCCACCC  995
      || |||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CTGGACCCTTCCAGCCAGGGCCCTCCCTTCTCTTTGGTCCTTCTCCACCC  1000

seq1  CA-CACTACCCCAATG-CTGGGACTAGAACAA-TGTCCTTGCACATGCTG  1042
      || | ||||| ||||| ||||||||||||||| |||||||||||||||||
seq2  CACCCCTACCTCAATGTCTGGGACTAGAACAATTGTCCTTGCACATGCTG  1050

seq1  GATG-AGAGC-AGGCCACCCTCTACCATAACCCTCTTCATATTTGGATAC  1090
      |||| ||||| || |||||||||||| |||||||||||||||| | |  |
seq2  GATGAAGAGCAAGCCCACCCTCTACC-TAACCCTCTTCATATTGGAACCC  1099

seq1  GGAGTATCACTAAGTTGCCAAAGCTC  1116
      |||| ||||  |||||||||||||||
seq2  GGAGAATCATCAAGTTGCCAAAGCTC  1125

seq1: chr17_46295921_46296563
seq2: B6Ng01-052F10.g_68_710 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATAGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATAGTCAT  50

seq1  AATGAGGTTGGCTTAAGGGTGACAGGCAAGCAAGAAAGCAGAGGGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTTGGCTTAAGGGTGACAGGCAAGCAAGAAAGCAGAGGGGAAGG  100

seq1  TTGCTCTAAGTCAGAGCACATGAAAGTGACATCACAAAATGCATATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTAAGTCAGAGCACATGAAAGTGACATCACAAAATGCATATTCAT  150

seq1  ACAAAGGTACTAGATGTAAAAGCAAGTGACTCACTACAAGCCAGGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTACTAGATGTAAAAGCAAGTGACTCACTACAAGCCAGGAAAAA  200

seq1  TATTTGCATGTGATGTGTATATAAGCACACACTATATACATCCTATAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATGTGATGTGTATATAAGCACACACTATATACATCCTATAGGC  250

seq1  AGCCACCTCGTAAACAACCTGTCTAGGAAACTGGCCACTTATACCACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTCGTAAACAACCTGTCTAGGAAACTGGCCACTTATACCACCTC  300

seq1  CACTCCCCAGGACCCTGGTCTCCCAGCAGGCATCCTGTGGCCTCTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCAGGACCCTGGTCTCCCAGCAGGCATCCTGTGGCCTCTCTCCT  350

seq1  CTGCCAGCCCTCACTTCTCTCTGTAGGTAGGCCAGGCTGTTCAAGAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCCCTCACTTCTCTCTGTAGGTAGGCCAGGCTGTTCAAGAATGG  400

seq1  GTTATATCATGCCCCACCCTTTCTTAAAGGAAGGTATCCATTAAGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATCATGCCCCACCCTTTCTTAAAGGAAGGTATCCATTAAGGAGAA  450

seq1  TTGGCTGGGATGGAATTGTGTGTTAAAGGGTGACTGCTGGAAGATCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGATGGAATTGTGTGTTAAAGGGTGACTGCTGGAAGATCCGTG  500

seq1  GATATTTAAAAAATAGTTATCAGTTGAGTGCAGTGGTTTCTGGCTGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAAAAATAGTTATCAGTTGAGTGCAGTGGTTTCTGGCTGGTGA  550

seq1  GAGAACCCGGCCTGTTTGTGGTGATAATGTGTGGGTGGGGTGGGGATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCGGCCTGTTTGTGGTGATAATGTGTGGGTGGGGTGGGGATGTC  600

seq1  TCTTCCTTTCTATTCCCATCCTTTGAGATGTCTCACTGAATTC  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCTATTCCCATCCTTTGAGATGTCTCACTGAATTC  643