BAC Information

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BAC

Clone NameB6Ng01-054J10
Chromosome17 (Build37)
Map Location 85,794,159 - 85,863,880
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneThada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054J10.bB6Ng01-054J10.g
ACCDH877291DH877292
length1,1361,109
definitionDH877291|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J10, 5' end.DH877292|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,794,159 - 85,795,316)(85,862,748 - 85,863,880)
sequence
gaattccctgcagatgactgtgggtgtcttccttttcatagggttgccag
acactcctccccgatggggtctgtgtttttcatgcctctctcgaggcgat
tcagaatcttcataattttgaaacattctcgctcctttattctcattaag
atcttccagcaccaagcagattaaaattattatttactttacttgatgtt
gcttgtaaatattaacatctagcctctgtgcgtgtgatattacacacgcc
cgtcatattgtgcctatgctaattgctaagcagttgtctatatctcccgc
tagaaacagctatcacctcttcgtcatctccttttatttaggattaaaag
ctgtctctccttttttttttctttctgctatgctattacagttcaaaccc
cattatattagattatgttttactaatatgtacacagagttcaggaaatt
gaaccgtactttaagaacgcaagcataagttattggctactgtagcagtc
tagctgatttgctcaaaggcagttagcagcagttagaaattgagaggaaa
cgtggaagatctgtttgctttggatttttttttttttttttgacatggtg
aggaagacaggactcttatttgcatttttactcccttcaagggcttgaag
cagctttgaattttgtagccttttatataaagcctatttttctatttttg
attttttttcctgcttccttcctccactctgtaaatcccccccacccccc
tttttggaaaataaacttgacggcagctctgtcagctgctcacacaggag
gaaggaggaagcagaactgtggtggctaatactgtgtggcagctgtgagc
tctgcagagccccacccagctaattgcctgacagcccttaaaaaaaaaaa
aaatcagaaggaaaaacagccaatcacaccttggcctttcacaccaggga
aagatcacaggaggggcttcccttttttaaacatcagattttaatcatga
tctgagactgtgcgagtctaaatattctgagaccaccaccgcatcgtcgc
tccttcatcagtctgttcttctctctcaaggactgcctcctctgtcgggg
cacgagagcatgggaagctctcagtatgccagctca
gaattcagggaaagcttttgccatcgttggaacatccgagcaagcagaag
aaaaggaggggtggcggggcctccaggttggagacaggcaaggagatctc
aagttcttgctaagtgagcctgtgctaggcatttagcctccgtacattaa
atacccaggttttaaaggagtgggtctccaaacatttattattcatagta
gcaggacagccagtaagccactatgtggaaactaaaagacttcccgtgct
aaaggttaataaaggcgtaatttgaatcatgaaatctttatgtgtccgct
caatttacacagaaggctcattaaagaggttgttggtaccagaggctgcg
ggtgacgtcacaacgggcatttaaatgggcggggccaggccgctctgcat
ggaatcctttaaaaatataaaagccttcctctttccttctctgtctctcc
agccgtaacaacttcaccaactgtctaggttccacccggaggatttcaca
gagagaacacgttagagggaatcaggaagcagagaaaaggtcacaaaata
agcacttggggaacaatgaaagcttttctctcagcagcagtgggagagtt
gctagaaaaacgggaaaggtattaatcagaagtggctataaaccctctgg
agttttgctcttataaaactcctcagaaaaagtcttgaaggaaatgcagg
tcaaagcccaaaaaagctcttgatcagagattgctggaggaaaaatcttc
ccagccgccgtttaataggcagcaatcgccccaggagtgaggaagccaag
taggcttgaggcatggttgcaattcctaataggtcttgtcacacttaagg
cgctgcaagctccatccgacgaacagctgaagctcgctggcgattcataa
agccacagtttaaagtttattatgatgaaagcacttaatgacagccatcg
ctagggcccatcatttataaagctgcgcagagtataggcatgtagcatga
cacaatttatgtccatgctacataaatgactttgtgattttgctgcatgt
ggtgacagctctcctccataggctctgtggctttcttgcaactattatgc
tgtcaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85794159_85795316
seq2: B6Ng01-054J10.b_46_1181

seq1  GAATTCCCTGCAGATGACTGTGGGTGTCTTCCTTTTCATAGGGTTGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCAGATGACTGTGGGTGTCTTCCTTTTCATAGGGTTGCCAG  50

seq1  ACACTCCTCCCCGATGGGGTCTGTGTTTTTCATGCCTCTCTCGAGGCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTCCCCGATGGGGTCTGTGTTTTTCATGCCTCTCTCGAGGCGAT  100

seq1  TCAGAATCTTCATAATTTTGAAACATTCTCGCTCCTTTATTCTCATTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTTCATAATTTTGAAACATTCTCGCTCCTTTATTCTCATTAAG  150

seq1  ATCTTCCAGCACCAAGCAGATTAAAATTATTATTTACTTTACTTGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGCACCAAGCAGATTAAAATTATTATTTACTTTACTTGATGTT  200

seq1  GCTTGTAAATATTAACATCTAGCCTCTGTGCGTGTGATATTACACACGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAAATATTAACATCTAGCCTCTGTGCGTGTGATATTACACACGCC  250

seq1  CGTCATATTGTGCCTATGCTAATTGCTAAGCAGTTGTCTATATCTCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATATTGTGCCTATGCTAATTGCTAAGCAGTTGTCTATATCTCCCGC  300

seq1  TAGAAACAGCTATCACCTCTTCGTCATCTCCTTTTATTTAGGATTAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAGCTATCACCTCTTCGTCATCTCCTTTTATTTAGGATTAAAAG  350

seq1  CTGTCTCTCCTTTTTTTTTTCTTTCTGCTATGCTATTACAGTTCAAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCCTTTTTTTTTTCTTTCTGCTATGCTATTACAGTTCAAACCC  400

seq1  CATTATATTAGATTATGTTTTACTAATATGTACACAGAGTTCAGGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATTAGATTATGTTTTACTAATATGTACACAGAGTTCAGGAAATT  450

seq1  GAACCGTACTTTAAGAACGCAAGCATAAGTTATTGGCTACTGTAGCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGTACTTTAAGAACGCAAGCATAAGTTATTGGCTACTGTAGCAGTC  500

seq1  TAGCTGATTTGCTCAAAGGCAGTTAGCAGCAGTTAGAAATTGAGAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATTTGCTCAAAGGCAGTTAGCAGCAGTTAGAAATTGAGAGGAAA  550

seq1  CGTGGAAGATCTGTTTGCTTTGGATTTTTTTTTTTTTTTTTGACATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGATCTGTTTGCTTTGGATTTTTTTTTTTTTTTTTGACATGGTG  600

seq1  AGGAAGACAGGACTCTTATTTGCATTTTTACTCCCTTCAAGGGCTTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAGGACTCTTATTTGCATTTTTACTCCCTTCAAGGGCTTGAAG  650

seq1  CAGCTTTGAATTTTGTAGCCTTTTATATAAAGCCTATTTTTCTATTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGAATTTTGTAGCCTTTTATATAAAGCCTATTTTTCTATTTTTG  700

seq1  ATTTTTTTTCCTGCTTCCTTCCTCCACTCTGTAAATCCCCCCCACCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTCCTGCTTCCTTCCTCCACTCTGTAAATCCCCCCCACCCCCC  750

seq1  TTTTTGGAAAATAAACTTGACGGCAGCTCTGTCAGCTGCTCACACAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAAAATAAACTTGACGGCAGCTCTGTCAGCTGCTCACACAGGAG  800

seq1  GAAGGAGGAAGCAGAACTGTGGTGGCTAATACTGTGTGGCAGCTGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAAGCAGAACTGTGGTGGCTAATACTGTGTGGCAGCTGTGAGC  850

seq1  TCTGCAGAGCCCCACCCAGCTAATTGCCTGACAGCCCTTAAAAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGCCCCACCCAGCTAATTGCCTGACAGCCCTTAAAAAAAAAAA  900

seq1  AAATCAGGAAGGAAAAACAGCCAATCACAACCTTGGCCTTTCACACCAGG  950
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATCA-GAAGGAAAAACAGCCAATCAC-ACCTTGGCCTTTCACACCAGG  948

seq1  GAAAGATCACAGAAGGTGCTTCCCTTTTTTTAAACATCAGATTTTAATCA  1000
      |||||||||||| ||| ||||||| |||||||||||||||||||||||||
seq2  GAAAGATCACAGGAGGGGCTTCCC-TTTTTTAAACATCAGATTTTAATCA  997

seq1  TGATCTTGAGACTGTGGCGAGTTCTAAATATTCCTGAGGACCACCACCGC  1050
      ||||| ||||||||| ||||| |||||||||| |||| ||||||||||| 
seq2  TGATC-TGAGACTGT-GCGAG-TCTAAATATT-CTGA-GACCACCACCG-  1041

seq1  CATCGTCGCTCCCTTCCATTCAGTCCTGGTTCTTCTCTCTCAGTGACTGC  1100
      |||||||||| |||||   ||||||   ||||||||||||||  ||||||
seq2  CATCGTCGCT-CCTTC--ATCAGTC--TGTTCTTCTCTCTCAAGGACTGC  1086

seq1  GCTCCTCCTTGTCGGGGAGCACGGAGAGCAATGGGAAGCTCTCAGGTATG  1150
       ||||||  |||||||  |||| |||||| |||||||||||||| |||||
seq2  -CTCCTC--TGTCGGG--GCAC-GAGAGC-ATGGGAAGCTCTCA-GTATG  1128

seq1  CCAGCTCA  1158
      ||||||||
seq2  CCAGCTCA  1136

seq1: chr17_85862748_85863880
seq2: B6Ng01-054J10.g_65_1173 (reverse)

seq1  AGCTTTAGACAGCATAATAGTCTGCAAAGAAAGCCACAGAGCACTAATGT  50
      |||||  |||||||||||||| ||| |||||||||||||||| |||   |
seq2  AGCTT--GACAGCATAATAGT-TGC-AAGAAAGCCACAGAGC-CTA---T  42

seq1  GAAGGAAGAGCTGTCCACCACATGCAGCAAAAATCACCAAAGGTCATTTT  100
      | ||| |||||||| ||||||||||||| ||||||||  || |||| |||
seq2  GGAGG-AGAGCTGT-CACCACATGCAGC-AAAATCAC--AAAGTCA-TTT  86

seq1  ATGGTAGCAATTGTGACATAAAATTGGTGGTCATGCTACATGCCTAATAC  150
      || ||||||  || ||||| ||||||   |||||||||||||||| ||||
seq2  AT-GTAGCA--TG-GACAT-AAATTG--TGTCATGCTACATGCCT-ATAC  128

seq1  TCTGCGCAGCTTTATAAATGATGGGCCCCTAGCGATGGCTGTCATTAAGT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGCGCAGCTTTATAAATGATGGG-CCCTAGCGATGGCTGTCATTAAGT  177

seq1  GCTTTCATCATAATAAACTTTAAACTGTTGGCTTTATGAATCGCCAGCGA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTTTCATCATAATAAACTTTAAACTG-TGGCTTTATGAATCGCCAGCGA  226

seq1  GCTTCAGCTGTTCGTCGGATGGAGCTTGCAGCGCCTTAAGTGTGACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCTGTTCGTCGGATGGAGCTTGCAGCGCCTTAAGTGTGACAAGA  276

seq1  CCTATTAGGAATTGCAACCATGCCTCAAGCCTACTTGGCTTCCTCACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAGGAATTGCAACCATGCCTCAAGCCTACTTGGCTTCCTCACTCC  326

seq1  TGGGGCGATTGCTGCCTATTAAACGGCGGCTGGGAAGATTTTTCCTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGATTGCTGCCTATTAAACGGCGGCTGGGAAGATTTTTCCTCCAG  376

seq1  CAATCTCTGATCAAGAGCTTTTTTGGGCTTTGACCTGCATTTCCTTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTGATCAAGAGCTTTTTTGGGCTTTGACCTGCATTTCCTTCAAG  426

seq1  ACTTTTTCTGAGGAGTTTTATAAGAGCAAAACTCCAGAGGGTTTATAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTGAGGAGTTTTATAAGAGCAAAACTCCAGAGGGTTTATAGCC  476

seq1  ACTTCTGATTAATACCTTTCCCGTTTTTCTAGCAACTCTCCCACTGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGATTAATACCTTTCCCGTTTTTCTAGCAACTCTCCCACTGCTGC  526

seq1  TGAGAGAAAAGCTTTCATTGTTCCCCAAGTGCTTATTTTGTGACCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAAAGCTTTCATTGTTCCCCAAGTGCTTATTTTGTGACCTTTTC  576

seq1  TCTGCTTCCTGATTCCCTCTAACGTGTTCTCTCTGTGAAATCCTCCGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCTGATTCCCTCTAACGTGTTCTCTCTGTGAAATCCTCCGGGT  626

seq1  GGAACCTAGACAGTTGGTGAAGTTGTTACGGCTGGAGAGACAGAGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTAGACAGTTGGTGAAGTTGTTACGGCTGGAGAGACAGAGAAGGA  676

seq1  AAGAGGAAGGCTTTTATATTTTTAAAGGATTCCATGCAGAGCGGCCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGCTTTTATATTTTTAAAGGATTCCATGCAGAGCGGCCTGGC  726

seq1  CCCGCCCATTTAAATGCCCGTTGTGACGTCACCCGCAGCCTCTGGTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCATTTAAATGCCCGTTGTGACGTCACCCGCAGCCTCTGGTACCA  776

seq1  ACAACCTCTTTAATGAGCCTTCTGTGTAAATTGAGCGGACACATAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTCTTTAATGAGCCTTCTGTGTAAATTGAGCGGACACATAAAGAT  826

seq1  TTCATGATTCAAATTACGCCTTTATTAACCTTTAGCACGGGAAGTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTCAAATTACGCCTTTATTAACCTTTAGCACGGGAAGTCTTTT  876

seq1  AGTTTCCACATAGTGGCTTACTGGCTGTCCTGCTACTATGAATAATAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCACATAGTGGCTTACTGGCTGTCCTGCTACTATGAATAATAAAT  926

seq1  GTTTGGAGACCCACTCCTTTAAAACCTGGGTATTTAATGTACGGAGGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGACCCACTCCTTTAAAACCTGGGTATTTAATGTACGGAGGCTA  976

seq1  AATGCCTAGCACAGGCTCACTTAGCAAGAACTTGAGATCTCCTTGCCTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAGCACAGGCTCACTTAGCAAGAACTTGAGATCTCCTTGCCTGT  1026

seq1  CTCCAACCTGGAGGCCCCGCCACCCCTCCTTTTCTTCTGCTTGCTCGGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCTGGAGGCCCCGCCACCCCTCCTTTTCTTCTGCTTGCTCGGAT  1076

seq1  GTTCCAACGATGGCAAAAGCTTTCCCTGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  GTTCCAACGATGGCAAAAGCTTTCCCTGAATTC  1109