BAC Information

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BAC

Clone NameB6Ng01-056F03
Chromosome17 (Build37)
Map Location 85,582,273 - 85,725,153
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056F03.bB6Ng01-056F03.g
ACCDH878514DH878515
length1,111226
definitionDH878514|Mus musculus domesticus DNA, BAC clone: B6Ng01-056F03, 5' end.DH878515|Mus musculus domesticus DNA, BAC clone: B6Ng01-056F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,724,011 - 85,725,153)(85,582,273 - 85,582,498)
sequence
gaattccaatcagaaagatttatgccaccccccaacctcagagaaaccca
taaaactaggtcaatggaggtgcctctccatgacaccatagttacctata
cattcatctgcattcttttcaaaaaaatttgtccattttttattttatgt
gtgttccacctgaatatatttatacacaccatgtctgtgcttggtgccca
cagaggtcagaagacagcatcagatcttttgaaactggagtaatggattg
ttgtgaacccccgtatatgttcattcatgggaattgaacctgggtgttct
gcaaaaacagcatacactctgaaccactgagccatctctccagcctctct
tctgggttcttatacatctaaatttcatattacatgtatgtctcctcaac
agactggactgcttaaaagcacaaagcaagaagtctgagtgagataagca
aacttgtagataacgaattattaatctgaggacattagaagccttctggt
tttaccaacaactaacaacaatcccagaccctaaagcataaactagaaaa
ctggacgcaataataggaggctacttatttctgttcctggcaacaggcag
tgcaaggctgggctcttccagcaaggctctaagagccaagcagagatgga
tgagaacagagatgggcttaggggatgcgggcacactggaattcacaggg
cagagtacagaaggaacataaactaagtacagaagcagagcttcagaact
cgggacaaaatctctgagtctttgcttgcatacatggatttacactccag
tagctgaggctagccagggttacacagatagaccctttctcaaaaggaag
aaaaggagaccaggcatatagcccttgccttctaagggaggacttgaatt
tcatacccatctcaacaaacagcacaacagatttataaataaccccagat
catgactactaaaatatagaatcggctgagagatgctcagagatgagagc
actggctgcctcagaagtctgagtcaatccagcacccacatagtgctcaa
actgtctatactttagtcataaaactgatacctcttcagttcaattacac
acagacagaca
tctaaaggaggtattactttcgggtaagcaacgtgtatcaagtgatagtc
aatttccttagctagtgagagactgaggtgcgactgaagctcggctgtgg
ctcctgggtcagcgtcgtgcatccctgactttatagcaatgggaagaaac
ttggatagttggaaactgtgttagtacttgaagatgcacatgctgggggt
tgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85724011_85725153
seq2: B6Ng01-056F03.b_46_1156 (reverse)

seq1  TGTCTTGTCTGTGTGTACATTTGCACACCAGAAGAGGGTATCAGGTTTTA  50
      |||| |||||||||||| |||     | | ||||| ||||||| ||||||
seq2  TGTC-TGTCTGTGTGTA-ATT----GAACTGAAGA-GGTATCA-GTTTTA  42

seq1  TGGAACTACAGTTATTAGACAGTTGTGAGCCACTATGTGGGTGCTGGGAT  100
      ||  |||| |||   ||||||||| |||| ||||||||||||||| ||||
seq2  TG--ACTAAAGT--ATAGACAGTT-TGAG-CACTATGTGGGTGCT-GGAT  85

seq1  TTGAACTCAGGACTTCTGGAAGAGCAGCCAGTGCTCTTCATCTCTGAGCC  150
      |   ||||| ||||||||  || ||||||||||||| ||||||||||| |
seq2  T--GACTCA-GACTTCTG--AG-GCAGCCAGTGCTC-TCATCTCTGAG-C  127

seq1  ATCTCTCCAGCCCGAATTCTATATTTTAGTAGTCATTGATCTGGGGGTTA  200
      |||||| |||||   |||||||||||||||||||| |||||| |||||||
seq2  ATCTCT-CAGCC--GATTCTATATTTTAGTAGTCA-TGATCT-GGGGTTA  172

seq1  TTTATAAATCTTGTTTGTGCTGTTTGTTGAGATGGGTATGAAATTCAAGT  250
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATCT--GTTGTGCTGTTTGTTGAGATGGGTATGAAATTCAAGT  220

seq1  CCTCCCCTTAGAAGGCAAGGGCTATATGCCTGGTCTCCTTTTCTTCCTTT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-CCCTTAGAAGGCAAGGGCTATATGCCTGGTCTCCTTTTCTTCCTTT  269

seq1  TGAGAAAGGGTCTATCTGTGTAACCCTGGCTAGCCTCAGCCTACTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGAAAGGGTCTATCTGTGTAACCCTGGCTAGCCTCAG-CTACTGGAGT  318

seq1  GTAAATCCATGTATGCAAGCAAAGACTCAGAGATTTTGTCCCGAGTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCATGTATGCAAGCAAAGACTCAGAGATTTTGTCCCGAGTTCTG  368

seq1  AAGCTCTGCTTCTGTACTTAGTTTATGTTCCTTCTGTACTCTGCCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCTTCTGTACTTAGTTTATGTTCCTTCTGTACTCTGCCCTGTG  418

seq1  AATTCCAGTGTGCCCGCATCCCCTAAGCCCATCTCTGTTCTCATCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTGTGCCCGCATCCCCTAAGCCCATCTCTGTTCTCATCCATCT  468

seq1  CTGCTTGGCTCTTAGAGCCTTGCTGGAAGAGCCCAGCCTTGCACTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGCTCTTAGAGCCTTGCTGGAAGAGCCCAGCCTTGCACTGCCTG  518

seq1  TTGCCAGGAACAGAAATAAGTAGCCTCCTATTATTGCGTCCAGTTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGAACAGAAATAAGTAGCCTCCTATTATTGCGTCCAGTTTTCTA  568

seq1  GTTTATGCTTTAGGGTCTGGGATTGTTGTTAGTTGTTGGTAAAACCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGCTTTAGGGTCTGGGATTGTTGTTAGTTGTTGGTAAAACCAGAA  618

seq1  GGCTTCTAATGTCCTCAGATTAATAATTCGTTATCTACAAGTTTGCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTAATGTCCTCAGATTAATAATTCGTTATCTACAAGTTTGCTTAT  668

seq1  CTCACTCAGACTTCTTGCTTTGTGCTTTTAAGCAGTCCAGTCTGTTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGACTTCTTGCTTTGTGCTTTTAAGCAGTCCAGTCTGTTGAGG  718

seq1  AGACATACATGTAATATGAAATTTAGATGTATAAGAACCCAGAAGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACATGTAATATGAAATTTAGATGTATAAGAACCCAGAAGAGAGG  768

seq1  CTGGAGAGATGGCTCAGTGGTTCAGAGTGTATGCTGTTTTTGCAGAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGGCTCAGTGGTTCAGAGTGTATGCTGTTTTTGCAGAACAC  818

seq1  CCAGGTTCAATTCCCATGAATGAACATATACGGGGGTTCACAACAATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCAATTCCCATGAATGAACATATACGGGGGTTCACAACAATCCA  868

seq1  TTACTCCAGTTTCAAAAGATCTGATGCTGTCTTCTGACCTCTGTGGGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCAGTTTCAAAAGATCTGATGCTGTCTTCTGACCTCTGTGGGCAC  918

seq1  CAAGCACAGACATGGTGTGTATAAATATATTCAGGTGGAACACACATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACAGACATGGTGTGTATAAATATATTCAGGTGGAACACACATAAA  968

seq1  ATAAAAAATGGACAAATTTTTTTGAAAAGAATGCAGATGAATGTATAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATGGACAAATTTTTTTGAAAAGAATGCAGATGAATGTATAGGT  1018

seq1  AACTATGGTGTCATGGAGAGGCACCTCCATTGACCTAGTTTTATGGGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGTGTCATGGAGAGGCACCTCCATTGACCTAGTTTTATGGGTTT  1068

seq1  CTCTGAGGTTGGGGGGTGGCATAAATCTTTCTGATTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTTGGGGGGTGGCATAAATCTTTCTGATTGGAATTC  1111

seq1: chr17_85582273_85582498
seq2: B6Ng01-056F03.g_75_300

seq1  TCTAAAGGAGGTATTACTTTCGGGTAAGCAACGTGTATCAAGTGATAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGAGGTATTACTTTCGGGTAAGCAACGTGTATCAAGTGATAGTC  50

seq1  AATTTCCTTAGCTAGTGAGAGACTGAGGTGCGACTGAAGCTCGGCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTAGCTAGTGAGAGACTGAGGTGCGACTGAAGCTCGGCTGTGG  100

seq1  CTCCTGGGTCAGCGTCGTGCATCCCTGACTTTATAGCAATGGGAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGTCAGCGTCGTGCATCCCTGACTTTATAGCAATGGGAAGAAAC  150

seq1  TTGGATAGTTGGAAACTGTGTTAGTACTTGAAGATGCACATGCTGGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGTTGGAAACTGTGTTAGTACTTGAAGATGCACATGCTGGGGGT  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTG  226
      ||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTG  226