BAC Information

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BAC

Clone NameB6Ng01-056I01
Chromosome17 (Build37)
Map Location 36,517,827 - 36,518,543
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3
Downstream geneGm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056I01.bB6Ng01-056I01.g
ACCDH878640DH878641
length1,156980
definitionDH878640|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I01, 5' end.DH878641|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattgtttgttcaggtgtgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttcgttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctattggtggtct
ttgtgtcttattgacagtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcaatcttaaagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttggatttgaccttagtacaaggagagaggaatgggtcaattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcctcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtatttt
tatccttgagaagagtttttgctatattaagttttttgtttttccagatg
aatttggagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagatttgcttttggcaagatagccatt
ttttacaatgttgatcctaccaatccatgagcatgggagatctttcaatc
tttctgagatcttcttttatttctttctttcagacacttgaagtttttat
catacagatctttcacttccttagtagagtcacgccaagaatattttata
ttatttgtgactattgagaaggtgttgttccctcatttctttcctcagcc
tgtttattcttgtgtaagagaaaggcaatgattgttgagtttattataat
tccagctacttcaccgaagctgtttcagatatagaagtactcgggggaat
tgaggtcactatatatacctatcatacatctcgcaaagggataatttggc
atcatc
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatgg
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaagtcaa
tggcctttctctatacaaagaataaacaggctgagaaagaaattagggaa
acaacacccttctcaatagtcacaaataatataaaatatcttggcgtgac
tctaactaaggaagtggaagatctgtataataaaaacttcaaatctctga
agaaagaaattaaagaagatctcagaagatggaaagatctcccatgccca
tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacg
aattagaaggagcaattttgcaaattcatctggaataacaaaaaacctag
gatagcaaaaactcttctcaaggataaaagaacctctggtggaataacca
tgcctgaccaccttgattttcatagcaagtcccaggccagggtagtttat
atactatatcccatcttccaaattctaatgatattaataaaaaataattt
ggtcaataattattttaatttcttaaaataattttaattataatttttga
aatatgaagaaataaaatcttctgtggcttcttgagattcctcaacatga
aaggcacttgctgttctgcaaagatcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36517827_36518543
seq2: B6Ng01-056I01.g_331_1042

seq1  TAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGC  50

seq1  TTCGGTGAAGTAGCTGGATATAAAATAAACTCAAGTCAATGGCCTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGAAGTAGCTGGATATAAAATAAACTCAAGTCAATGGCCTTTCTC  100

seq1  TATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTT  150

seq1  CTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGG  200

seq1  AAGTGGAAGATCTGTATAATAAAAACTTCAAATCTCTGAAGAAAGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGATCTGTATAATAAAAACTTCAAATCTCTGAAGAAAGAAATT  250

seq1  AAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCCCATGGATTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCCCATGGATTGGCAG  300

seq1  GATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCA  350

seq1  ATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGA  400

seq1  GCAA-TTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAA  449
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAA  450

seq1  CTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATAACCATGCCTGACCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATAACCATGCCTGACCAC  500

seq1  CTTGATTTTCATAGCAAGTCCCAGGCCAGGGTAGTTTATATAACTATATC  549
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTGATTTTCATAGCAAGTCCCAGGCCAGGGTAGTTTATAT-ACTATATC  549

seq1  CCATCTTCCAAAAATTCTAATGATATTAATAAAAAATTAATTTGTTCATA  599
      |||||||||  ||||||||||||||||||||||||| ||||||| |||  
seq2  CCATCTTCC--AAATTCTAATGATATTAATAAAAAA-TAATTTGGTCAAT  596

seq1  AATTATTTTAAATTTCTTAAAATAAAATTTTATTATAATTTTTG-AATAT  648
      ||||||||| ||||||||||||| || ||| ||||||||||||| |||||
seq2  AATTATTTT-AATTTCTTAAAAT-AATTTTAATTATAATTTTTGAAATAT  644

seq1  GAAGAAATATAATCTCCTGTGGCTTC-TGAGATCACTCAGCAATGAAAGG  697
      ||||||||| ||||| |||||||||| ||||||  |||| | ||||||||
seq2  GAAGAAATAAAATCTTCTGTGGCTTCTTGAGATTCCTCAAC-ATGAAAGG  693

seq1  CACTTGCTGTTCTTGCAAAG  717
      |||||||||||| |||||||
seq2  CACTTGCTGTTC-TGCAAAG  712