BAC Information

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BAC

Clone NameB6Ng01-056L06
Chromosome17 (Build37)
Map Location 46,825,297 - 46,997,108
singlet/doubletdoublet
Overlap genePpp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
Upstream geneMrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1
Downstream geneA330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056L06.bB6Ng01-056L06.g
ACCDH878780DH878781
length8891,044
definitionDH878780|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L06, 5' end.DH878781|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,996,220 - 46,997,108)(46,825,297 - 46,826,333)
sequence
gaattcaaagcaaattaattaattaactacatacatacatacacatacat
agtacatacatacaaggcttctaagaaaagaaagaccctcaaagatagat
actatgtaatactaacgtaactgaatgtatttttcagtcagatctaaata
ccaagcctacattatgtagatcgccagttactgaaacatgaggtggtttg
cttctgagaaagaagttggatgtagcaacatagtatggcagctttgacaa
acttgtttaattttatgcttatataagtaagcaaggtgcataaaggactt
gtgtgggtgttctggggctgaacccaggactgcggtcacacagtcacaca
gtaaagcatgttttagccctgcctctcactggacagcatctccacctctg
cccagaggcttttgcttctagtaaaggctatacaaaccaaacaatattgt
aaagaatttaaatctggtgatacttttatttagaactcaccagatatgtt
tatcaacaaaacctcaccaactgacttcaaataatatggggcggggggat
caaggcttaaatctgtatctttaagcatgaattacattcttgtacaactt
attacctatttctgatatttttttaaaccccctccttgctatattgtgtg
ggcatttgggcattagtagttaggctgcaaagaactctcataatgaatac
ttatgtttcgggtactactaggtggtttaagaagtgtcaacaattttgaa
atttaaaacaggtggtaattattggttggaccaaattggtgctaaaaggt
tttgtactttcattttttttaatatggaagtgatttattgcaacctccca
caacatgaatagaaagatagcagactaatagcgagggcc
gaattcaatcctcaggatgggaggaaacattcaggcctgggcataagggc
tgactgtgggagaggcgacacgaggcaccttctcaacaggggaagcactg
tcgtgagggcatcttggatgaagacagcgtgtggtaacaagacactggac
acacctcacattactgagtggtctacacccttcaatttaaaacttagtaa
aagaaacttgttcttgaatctttgcaccttgtcagaaatttagtttaata
aaaatcctgggttttgttttttgttttttaaaaaaggcagccctgggacc
agataaatgtctcagtggttcggagcatgcaccactctcacagaagacct
ggatggggtccttgcacccactgaacaacgcacaactacctgcaactcca
gttcaaagggcctactgccctcttctgtctgacctgaatgagcatctcca
tacttctgtcagtagacagccacatgtatttatttacttatatacataca
tacataatacatacatacatacacacatacacatacatatacacacatgt
atacacagtaataaaaggcttaattaagctaggcatagtagtacatgcct
ttaatcctagcccttgggaggcagaagcacaagtttcaaggcaagcctgg
cctacatagcaagttccaggccaaccagagttacacagtgatgagacttt
gtctcaaaaaaagaaaaaaagaaaaaaaaaaggcaagctggctggactga
tggttcagcaggtaggagcaccggctgctcttccagagaatcccagtgtg
aagcccagaacccacatagaacccaaatgcccgtacctccagtcccagat
ctaatgccctctttctgggcctccaaggacaccgagaatgcctgttgtgc
acacataattaccccacagtacaaaacacatcacacaaaacagtaaattc
tttatatgtttttggtttttttgagacatatttctcttgtagccctgtta
tctggccaaaataataaatcctttaaaagcaaaaacaaaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46996220_46997108
seq2: B6Ng01-056L06.b_45_933 (reverse)

seq1  GGCCCTCGCTATTTAGTCTGCTATCTTTTCTATTCATGTTTGTGGG-GGT  49
      ||||||||||| ||||||||||||| |||||||||||| ||||||| |||
seq2  GGCCCTCGCTA-TTAGTCTGCTATC-TTTCTATTCATG-TTGTGGGAGGT  47

seq1  TGCATTAAATCACTTCCATTCTTAAAAAAAATGAAGCTACAAAACCTTTT  99
      |||| ||||||||||||| | ||||||||||||||  |||||||||||||
seq2  TGCAATAAATCACTTCCA-TATTAAAAAAAATGAAAGTACAAAACCTTTT  96

seq1  AGCACC-ATTTGGTCCAACC-ATAATTACCACCTGTTTTAAATTTC-AAA  146
      |||||| ||||||||||||| ||||||||||||||||||||||||| |||
seq2  AGCACCAATTTGGTCCAACCAATAATTACCACCTGTTTTAAATTTCAAAA  146

seq1  TTGTTGACACTTCTTAAACCACCTAGTAGTACCCGAAACATAAGTATTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACACTTCTTAAACCACCTAGTAGTACCCGAAACATAAGTATTCA  196

seq1  TTATGAGAGTTCTTTGCAGCCTAACTACTAATGCCCAAATGCCCACACAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAGTTCTTTGCAGCCTAACTACTAATGCCCAAATGCCCACACAA  246

seq1  TATAGCAAGGAGGGGGTTTAAAAAAATATCAGAAATAGGTAATAAGTTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAGGAGGGGGTTTAAAAAAATATCAGAAATAGGTAATAAGTTGT  296

seq1  ACAAGAATGTAATTCATGCTTAAAGATACAGATTTAAGCCTTGATCCCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATGTAATTCATGCTTAAAGATACAGATTTAAGCCTTGATCCCCC  346

seq1  CGCCCCATATTATTTGAAGTCAGTTGGTGAGGTTTTGTTGATAAACATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCATATTATTTGAAGTCAGTTGGTGAGGTTTTGTTGATAAACATAT  396

seq1  CTGGTGAGTTCTAAATAAAAGTATCACCAGATTTAAATTCTTTACAATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGTTCTAAATAAAAGTATCACCAGATTTAAATTCTTTACAATAT  446

seq1  TGTTTGGTTTGTATAGCCTTTACTAGAAGCAAAAGCCTCTGGGCAGAGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTTGTATAGCCTTTACTAGAAGCAAAAGCCTCTGGGCAGAGGT  496

seq1  GGAGATGCTGTCCAGTGAGAGGCAGGGCTAAAACATGCTTTACTGTGTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCTGTCCAGTGAGAGGCAGGGCTAAAACATGCTTTACTGTGTGA  546

seq1  CTGTGTGACCGCAGTCCTGGGTTCAGCCCCAGAACACCCACACAAGTCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGACCGCAGTCCTGGGTTCAGCCCCAGAACACCCACACAAGTCCT  596

seq1  TTATGCACCTTGCTTACTTATATAAGCATAAAATTAAACAAGTTTGTCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACCTTGCTTACTTATATAAGCATAAAATTAAACAAGTTTGTCAA  646

seq1  AGCTGCCATACTATGTTGCTACATCCAACTTCTTTCTCAGAAGCAAACCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATACTATGTTGCTACATCCAACTTCTTTCTCAGAAGCAAACCA  696

seq1  CCTCATGTTTCAGTAACTGGCGATCTACATAATGTAGGCTTGGTATTTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTTTCAGTAACTGGCGATCTACATAATGTAGGCTTGGTATTTAG  746

seq1  ATCTGACTGAAAAATACATTCAGTTACGTTAGTATTACATAGTATCTATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTGAAAAATACATTCAGTTACGTTAGTATTACATAGTATCTATC  796

seq1  TTTGAGGGTCTTTCTTTTCTTAGAAGCCTTGTATGTATGTACTATGTATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGTCTTTCTTTTCTTAGAAGCCTTGTATGTATGTACTATGTATG  846

seq1  TGTATGTATGTATGTAGTTAATTAATTAATTTGCTTTGAATTC  889
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTAGTTAATTAATTAATTTGCTTTGAATTC  889

seq1: chr17_46825297_46826333
seq2: B6Ng01-056L06.g_69_1112

seq1  GAATTCAATCCTCAGGATGGGAGGAAACATTCAGGCCTGGGCATAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTCAGGATGGGAGGAAACATTCAGGCCTGGGCATAAGGGC  50

seq1  TGACTGTGGGAGAGGCGACACGAGGCACCTTCTCAACAGGGGAAGCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGGGAGAGGCGACACGAGGCACCTTCTCAACAGGGGAAGCACTG  100

seq1  TCGTGAGGGCATCTTGGATGAAGACAGCGTGTGGTAACAAGACACTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGGGCATCTTGGATGAAGACAGCGTGTGGTAACAAGACACTGGAC  150

seq1  ACACCTCACATTACTGAGTGGTCTACACCCTTCAATTTAAAACTTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCACATTACTGAGTGGTCTACACCCTTCAATTTAAAACTTAGTAA  200

seq1  AAGAAACTTGTTCTTGAATCTTTGCACCTTGTCAGAAATTTAGTTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTGTTCTTGAATCTTTGCACCTTGTCAGAAATTTAGTTTAATA  250

seq1  AAAATCCTGGGTTTTGTTTTTTGTTTTTTAAAAAAGGCAGCCCTGGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGGGTTTTGTTTTTTGTTTTTTAAAAAAGGCAGCCCTGGGACC  300

seq1  AGATAAATGTCTCAGTGGTTCGGAGCATGCACCACTCTCACAGAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATGTCTCAGTGGTTCGGAGCATGCACCACTCTCACAGAAGACCT  350

seq1  GGATGGGGTCCTTGCACCCACTGAACAACGCACAACTACCTGCAACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGTCCTTGCACCCACTGAACAACGCACAACTACCTGCAACTCCA  400

seq1  GTTCAAAGGGCCTACTGCCCTCTTCTGTCTGACCTGAATGAGCATCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGGGCCTACTGCCCTCTTCTGTCTGACCTGAATGAGCATCTCCA  450

seq1  TACTTCTGTCAGTAGACAGCCACATGTATTTATTTACTTATATACATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGTCAGTAGACAGCCACATGTATTTATTTACTTATATACATACA  500

seq1  TACATAATACATACATACATACACACATACACATACATATACACACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATACATACATACATACACACATACACATACATATACACACATGT  550

seq1  ATACACAGTAATAAAAGGCTTAATTAAGCTAGGCATAGTAGTACATGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGTAATAAAAGGCTTAATTAAGCTAGGCATAGTAGTACATGCCT  600

seq1  TTAATCCTAGCCCTTGGGAGGCAGAAGCACAAG-TTCAAGGCAAGCCTGG  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAATCCTAGCCCTTGGGAGGCAGAAGCACAAGTTTCAAGGCAAGCCTGG  650

seq1  CCTACATAGCAAGTTCCAGGCCAACCAGAGTTACACAGTGATGAGACTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAGCAAGTTCCAGGCCAACCAGAGTTACACAGTGATGAGACTTT  700

seq1  GTCTCAAAAAAAGAAAAAAAGAAAAAAAAAAGGCAAGCTGGCTGGACTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAAAAGAAAAAAAGAAAAAAAAAAGGCAAGCTGGCTGGACTGA  750

seq1  TGGTTCAGCAGGTAGGAGCACCGGCTGCTCTTCCAGAGAATCCCAGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGCAGGTAGGAGCACCGGCTGCTCTTCCAGAGAATCCCAGTGTG  800

seq1  AAGCCCAGAACCCACATAGAACCCAAATGCCCGTACCTCCAGTCCCAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAACCCACATAGAACCCAAATGCCCGTACCTCCAGTCCCAGAT  850

seq1  CTAATGCCCTC-TTCT-GGCCTCCAAGGACACCGAGAATGCCTGTTGTGC  897
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CTAATGCCCTCTTTCTGGGCCTCCAAGGACACCGAGAATGCCTGTTGTGC  900

seq1  ACACATAATTA-CACACAG-ACAAAACACA-CACACAAAACAGTAAA-TC  943
      ||||||||||| | ||||| |||||||||| |||||||||||||||| ||
seq2  ACACATAATTACCCCACAGTACAAAACACATCACACAAAACAGTAAATTC  950

seq1  TTTATATGTTTT--GGTTTTTTGAGACAATATTTCTC-TGTAGCCCTGTC  990
      ||||||||||||  | ||||||||||| ||||||||| ||||||||||| 
seq2  TTTATATGTTTTTGGTTTTTTTGAGAC-ATATTTCTCTTGTAGCCCTGT-  998

seq1  TATCCTGGCCAAAAATAATAAA-CCTTTAAAAGCAAAAACAAAAAATA  1037
      ||| |||||| ||||||||||| |||||||||||||||||||||||||
seq2  TAT-CTGGCC-AAAATAATAAATCCTTTAAAAGCAAAAACAAAAAATA  1044