BAC Information

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BAC

Clone NameB6Ng01-059P08
Chromosome17 (Build37)
Map Location 35,854,896 - 35,998,404
singlet/doubletdoublet
Overlap geneIer3, Flot1, Tubb5, Mdc1, Nrm
Upstream geneTnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream gene2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059P08.bB6Ng01-059P08.g
ACCDH881083DH881084
length8181,100
definitionDH881083|Mus musculus domesticus DNA, BAC clone: B6Ng01-059P08, 5' end.DH881084|Mus musculus domesticus DNA, BAC clone: B6Ng01-059P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,854,896 - 35,855,712)(35,997,295 - 35,998,404)
sequence
gaattcataagtgagttagtttagctgggtatggtggtgtagattcatat
tcaagtcagtgggtaagagcacccaactgctcttacccactgagccatct
caccagccctagaggttagctcttaactttagctgacccagcagttaatg
tatcaatacagctgttctacttgcttcttatgtcttgctgcgaggatggc
gcactgcttccggtgagtcaagcctgtggaagacgaggagacgtcggtca
atcgcttcagactgggtgaccaagcctgtgtcttcagactgaacctggtg
atggtgagacactcctctgaggtgtgtgctctgagaaacattgtctcagg
tttgcctgactgcagtgtggtctccaagggtgttgagcgtgaggttaaac
atgggaacctcatgctgtcatgagggtgtcctcggccgtgtgcaccctgg
agactttgatcccttgggaggcaggatgatccttgatgtcctgtgtgtga
aggatgaacttcatttagagactgaactcagcactgggaacttctcaacg
ttcgtcctaaagtacagtttgtttgctggttttttgtttgtttgtttgtt
tgtttgtttttttaaagggaaagcatgagccagagagatggctcaggcag
tgaaggggcttgccaccaagccgtatggcctgagtttcaatccctgggaa
ctacatggtgggaagaaagcgctaactcccaaaagttatcttctgaccct
caccacacactgtggaatgtgtgcaaaagcatgaataacataaatgagag
tagctgtttgggggctgg
gaattccactccggtgccaaaggccaggatgaaggaggcgagggccgcag
gaaccagcagcagcgccggtgccatggcgagcagcgcggagcctgaggag
aaggcgggctcagggttcccgcgactgctggccctgcccaggtcccgcct
ccttgggggtgctggcggcaaggcggggaccgcgagcggcgcgtcacagc
gcggagttggaatcccaggcgtcgtcagggcagctggtctgcggctaccc
ttgtgggtcgaatctcagcgctgtcagtgttctcgaggaaagtgaagaca
gagcctcccttgcgtggaaacataaagaacatcttgtttttaaagataat
cactccttattctccagcctcaatccctgatgtgctggggttacaaacgg
cgccaccccgcccaacatagatttttgtatagtgaccgttttagagctgg
gtgtggtggctcgtgcctgtaattccagtactcggaagggtgaggcagga
gaatttgaagttagcttggactgcatatggagaccggttccgaaaaagcc
attaaaaaaaaaaagagagagagagagacaaggtcgggagatggtggcat
atggatctccaagttccaggccagcctggcctatatagtcagttctagga
tagccaaaggctacacagagaaaccctgtctctaaaaccaaagaccgagt
aatgaaaggctcaatcaccatagctatccaagtacagggtcctcagaaga
caagagctgattctctcagattacagatagagcagggcagggaggctggt
tgctcccaagacgtctggaccaaagttctaatgcattgtatagcactttc
ctccccaccctgatctctgcttgggaatgttattgagtgggctccatctg
tgatgtttttgaagaggtctgtacttacatttattttgctttaattgtca
tgagtttcgcttgcaactatttgagtgtcagatcttggagtaccatgtga
gctgccatgtgggggtggtatagaacccagtctctggaagaagccagtac
ctccaccacttggagctctctccagcctccacttggactgctctaaaaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35854896_35855712
seq2: B6Ng01-059P08.b_51_868

seq1  GAATTCATAAGTGAGTTAGTTTAGCTGGGTATGGTGGTGTAGATTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGTGAGTTAGTTTAGCTGGGTATGGTGGTGTAGATTCATAT  50

seq1  TCAAGTCAGTGGGTAAGAGCACCCAACTGCTCTTACCCACTGAGCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAGTGGGTAAGAGCACCCAACTGCTCTTACCCACTGAGCCATCT  100

seq1  CACCAGCCCTAGAGGTTAGCTCTTAACTTTAGCTGACCCAGCAGTTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCTAGAGGTTAGCTCTTAACTTTAGCTGACCCAGCAGTTAATG  150

seq1  TATCAATACAGCTGTTCTACTTGCTTCTTATGTCTTGCTGCGAGGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATACAGCTGTTCTACTTGCTTCTTATGTCTTGCTGCGAGGATGGC  200

seq1  GCACTGCTTCCGGTGAGTCAAGCCTGTGGAAGACGAGGAGACGTCGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCTTCCGGTGAGTCAAGCCTGTGGAAGACGAGGAGACGTCGGTCA  250

seq1  ATCGCTTCAGACTGGGTGACCAAGCCTGTGTCTTCAGACTGAACCTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTCAGACTGGGTGACCAAGCCTGTGTCTTCAGACTGAACCTGGTG  300

seq1  ATGGTGAGACACTCCTCTGAGGTGTGTGCTCTGAGAAACATTGTCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGACACTCCTCTGAGGTGTGTGCTCTGAGAAACATTGTCTCAGG  350

seq1  TTTGCCTGACTGCAGTGTGGTCTCCAAGGGTGTTGAGCGTGAGGTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGACTGCAGTGTGGTCTCCAAGGGTGTTGAGCGTGAGGTTAAAC  400

seq1  ATGGGAACCTCATGCTGTCATGAGGGTGTCCTCGGCCGTGTGCACCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACCTCATGCTGTCATGAGGGTGTCCTCGGCCGTGTGCACCCTGG  450

seq1  AGACTTTGATCCCTTGGGAGGCAGGATGATCCTTGATGTCCTGTGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGATCCCTTGGGAGGCAGGATGATCCTTGATGTCCTGTGTGTGA  500

seq1  AGGATGAACTTCATTTAGAGACTGAACTCAGCACTGGGAACTTCTCAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAACTTCATTTAGAGACTGAACTCAGCACTGGGAACTTCTCAACG  550

seq1  TTCGTCCTAAAGTACAGTTTGTTTGCTGGTTTTTTGTTTGTTTGTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCCTAAAGTACAGTTTGTTTGCTGGTTTTTTGTTTGTTTGTTTGTT  600

seq1  TGTTTGTTTTTTTAAAGGGAAAGCATGAGCCAGAGAGATGGCTCAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTTAAAGGGAAAGCATGAGCCAGAGAGATGGCTCAGGCAG  650

seq1  TGAAGGGGCTTGCCACCAAGCCGTATGGCCTGAG-TTCAATCCCTGGGAA  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAAGGGGCTTGCCACCAAGCCGTATGGCCTGAGTTTCAATCCCTGGGAA  700

seq1  CTACATGGTGGGAAGAAAGCGCTAACTCCCAAAAGTTATCTTCTGACCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGTGGGAAGAAAGCGCTAACTCCCAAAAGTTATCTTCTGACCCT  750

seq1  CACCACACACTGTGGAATGTGTGCAAAAGCATGAATAACATAAATGAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACACTGTGGAATGTGTGCAAAAGCATGAATAACATAAATGAGAG  800

seq1  TTAGCTGTTT-GGGGCTGG  817
       ||||||||| ||||||||
seq2  -TAGCTGTTTGGGGGCTGG  818

seq1: chr17_35997295_35998404
seq2: B6Ng01-059P08.g_68_1167 (reverse)

seq1  TTTTTTTGAGCAGTCCAAGTGGGGGCTGGAGAGAGCTC--AGTGGTTGAG  48
      |||||| ||||||||||||||| |||||||||||||||  |||||| || 
seq2  TTTTTTAGAGCAGTCCAAGTGGAGGCTGGAGAGAGCTCCAAGTGGTGGA-  49

seq1  GGTACTGGGCTCTTCCAGAGGACCTGGGTTCAAATACCAGCACCCACATG  98
      ||||||||  ||||||||||   ||||||||  |||||| | ||||||||
seq2  GGTACTGGCTTCTTCCAGAG--ACTGGGTTC-TATACCA-CCCCCACATG  95

seq1  GCAGCTCACCACTGTTACTCCAAGATCTGACACTCACATAGTTGCAAGCA  148
      |||||||||   || ||||||||||||||||||||| |||||||||||| 
seq2  GCAGCTCAC--ATGGTACTCCAAGATCTGACACTCAAATAGTTGCAAGCG  143

seq1  AAACATCAATACACATAAAGGCAAAATAAATGTAAGTACAGAACTTCTTC  198
      |||| |||  ||| || || ||||||||||||||||||||| || |||||
seq2  AAAC-TCATGACA-ATTAAAGCAAAATAAATGTAAGTACAG-ACCTCTTC  190

seq1  AAAAACATTCACAGATGGAGCCCACTCAATACATTTCCCAAGCAGAGATC  248
      ||||||| |||||||||||||||||||||||   ||||||||||||||||
seq2  AAAAACA-TCACAGATGGAGCCCACTCAATAACATTCCCAAGCAGAGATC  239

seq1  AGGGTGGGGAGGAAAAGTGCTATACAATGCATTAGAAC-TTGGTCCAGAC  297
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  AGGGTGGGGAGG-AAAGTGCTATACAATGCATTAGAACTTTGGTCCAGAC  288

seq1  GTCTTGGGAGCAACCAGCCTCCCTGCCCTTGCTCTATCTGTAATCTGAGA  347
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTCTTGGGAGCAACCAGCCTCCCTGCCC-TGCTCTATCTGTAATCTGAGA  337

seq1  GAATCAGCTCTTGTCTTCTGAGGACCCTGTACTTGGATAGCTATGGTGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCTCTTGTCTTCTGAGGACCCTGTACTTGGATAGCTATGGTGAT  387

seq1  TGAGCCTTTCATTACTCGGTCTTTGGTTTTAGAGACAGGGTTTCTCTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTTCATTACTCGGTCTTTGGTTTTAGAGACAGGGTTTCTCTGTG  437

seq1  TAGCCTTTGGCTATCCTAGAACTGACTATATAGGCCAGGCTGGCCTGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTGGCTATCCTAGAACTGACTATATAGGCCAGGCTGGCCTGGAA  487

seq1  CTTGGAGATCCATATGCCACCATCTCCCGACCTTGTCTCTCTCTCTCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATCCATATGCCACCATCTCCCGACCTTGTCTCTCTCTCTCTCT  537

seq1  TTTTTTTTTTAATGGCTTTTTCGGAACCGGTCTCCATATGCAGTCCAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAATGGCTTTTTCGGAACCGGTCTCCATATGCAGTCCAAGC  587

seq1  TAACTTCAAATTCTCCTGCCTCACCCTTCCGAGTACTGGAATTACAGGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAAATTCTCCTGCCTCACCCTTCCGAGTACTGGAATTACAGGCA  637

seq1  CGAGCCACCACACCCAGCTCTAAAACGGTCACTATACAAAAATCTATGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCACCACACCCAGCTCTAAAACGGTCACTATACAAAAATCTATGTT  687

seq1  GGGCGGGGTGGCGCCGTTTGTAACCCCAGCACATCAGGGATTGAGGCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGTGGCGCCGTTTGTAACCCCAGCACATCAGGGATTGAGGCTGG  737

seq1  AGAATAAGGAGTGATTATCTTTAAAAACAAGATGTTCTTTATGTTTCCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGAGTGATTATCTTTAAAAACAAGATGTTCTTTATGTTTCCAC  787

seq1  GCAAGGGAGGCTCTGTCTTCACTTTCCTCGAGAACACTGACAGCGCTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGAGGCTCTGTCTTCACTTTCCTCGAGAACACTGACAGCGCTGAG  837

seq1  ATTCGACCCACAAGGGTAGCCGCAGACCAGCTGCCCTGACGACGCCTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGACCCACAAGGGTAGCCGCAGACCAGCTGCCCTGACGACGCCTGGG  887

seq1  ATTCCAACTCCGCGCTGTGACGCGCCGCTCGCGGTCCCCGCCTTGCCGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACTCCGCGCTGTGACGCGCCGCTCGCGGTCCCCGCCTTGCCGCC  937

seq1  AGCACCCCCAAGGAGGCGGGACCTGGGCAGGGCCAGCAGTCGCGGGAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCCCAAGGAGGCGGGACCTGGGCAGGGCCAGCAGTCGCGGGAACC  987

seq1  CTGAGCCCGCCTTCTCCTCAGGCTCCGCGCTGCTCGCCATGGCACCGGCG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCGCCTTCTCCTCAGGCTCCGCGCTGCTCGCCATGGCACCGGCG  1037

seq1  CTGCTGCTGGTTCCTGCGGCCCTCGCCTCCTTCATCCTGGCCTTTGGCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGGTTCCTGCGGCCCTCGCCTCCTTCATCCTGGCCTTTGGCAC  1087

seq1  CGGAGTGGAATTC  1110
      |||||||||||||
seq2  CGGAGTGGAATTC  1100