BAC Information

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BAC

Clone NameB6Ng01-060C04
Chromosome17 (Build37)
Map Location 47,872,903 - 48,027,497
singlet/doubletdoublet
Overlap geneLOC100043405, Tcfeb, Mdfi, Foxp4
Upstream geneTnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc
Downstream geneLOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C04.bB6Ng01-060C04.g
ACCDH881202DH881203
length1,0901,139
definitionDH881202|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C04, 5' end.DH881203|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,872,903 - 47,873,996)(48,026,321 - 48,027,497)
sequence
gaattctaggccacctagggttattgggtgagtctgtctccacgaaacaa
agcaatggtagaaataacaataaaccaggttttaaggccaagcacgtgaa
ccctggagtgtggcttcagtgctctcgcagaccttgcctggaaatctcac
aaagagaactgttttgattacagttaagatatcctgccttcctttataac
cttttacctaatcaattacaacagtatctgctacaccccaggaaacgtcc
cgtgatcttatttaaatttctcagcagtcctttgaagataactgcgggac
tcaccaaaacaaaagtatggctatggtaaaagacaaggagaagcccttgc
ccagtttctctgtcaacttcctcttaatccctatgttttaaatctacatt
aaaaaaaaatatatatatatatatatatatttaaaccaggcagtagtggt
atacacttttaatcccagcacttgaaagacaggtggatctctgtgaattt
aaggccagactgtctacaaatctagttgtagaacagccaaggctacacaa
agaaaccttgtgttaaagaaccatatatatatacttacataaatatatat
ttaataaactaaagctctgcttcatactggcttgtcctgaaattataata
ataattaatagagcaacaacaataatattgttattattatttaacaaaga
aatcaaaactctccccaagtggaagttgctaagggatagggtaacttctc
aggttgctgctggcaattatgggggtgggatcctatatttttctcacact
ttctggaaaagcagcttgctattggtcctttttcaagatgtaataatata
gaaagtcatatcacgggccatcatttgacagaaaaaaagagagaaaatct
gaaaagggaataaagacaaacgtttaaagttaaaaattgactcctaggga
acagcggccagtagaatggaactgcaaatctcgcgagcccttcgcggctg
cgacggggactacatttcctagcgggcacagcggtagcttatgggggcgg
tccgcagagggccggggctgccttctgccgggcccagcgg
gaattcaactcccaggctactctgcagccccagagactgggcaggatctc
ccctctcactgcccccccccccaatcctcagaaatgcctctgttgctatc
cccccctcatcggggatttgtccccttccactgaccactgtctcttttga
attacctgtgatggtcagctctggggtcaacccccactcccacaacctcg
tctctcaccctagctgttctttttgtgctctctccagctttagagagcaa
gaagcattatgtaaggttagccctggaggccagtgaaagctaggcaacag
aggccagaagaccttcctgaggggtcctaggccacctcctcgcctctccc
cgacagattttcttcctatcatctcagagtctctggacccaggaaggtca
gatctctgctttctaaagaaaaccttttgggagaggcagcgttctgtttt
gactccacctggaagtctggaacatttggggcggggaagagctggggtgg
tcagggtccagggctggcaaggagcacatgttcccatagatacaccagtg
agtatttagatagtgtccgaaggtaaactaggctgaaaccccaggaagcc
atgccagtcaacactgggaagggccacgcaggtggattgtatataaatag
ttaccctgggtacacagtgggtgctcagagggtgtttgccgagctgtgag
tgtctaccacacacatccctggtactgcaggagctggaggtgtggctcac
tgggagagcgcttgcctaaggatgtgtccggaggccctgaacctgatcaa
atgggggaagcattggaaagaggatggatgcaggggaaggaaagaggagt
tttatcctaaaagattctggggtagaagagtgggctcacgtgcgaatgaa
gcagtgtgagtggcagtgagagagacagccacagttgggcatcttcggct
aacagtgtgggctgatgggagcgactagtaggagcccctggggattaccg
agagaaggttcgatgtccgaatgcacaagcgcgcgcagcatggtctttat
tcctcgattgatcttgaagtggtatgtccagttttgcggtaaggagggaa
aaacgtatccgctgaacatgggatgacttacaaggtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47872903_47873996
seq2: B6Ng01-060C04.b_49_1138

seq1  GAATTCTAGGCCACCTAGGGTTATTGGGTGAGTCTGTCTCCACGAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCACCTAGGGTTATTGGGTGAGTCTGTCTCCACGAAACAA  50

seq1  AGCAATGGTAGAAATAACAATAAACCAGGTTTTAAGGCCAAGCACGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGTAGAAATAACAATAAACCAGGTTTTAAGGCCAAGCACGTGAA  100

seq1  CCCTGGAGTGTGGCTTCAGTGCTCTCGCAGACCTTGCCTGGAAATCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGTGTGGCTTCAGTGCTCTCGCAGACCTTGCCTGGAAATCTCAC  150

seq1  AAAGAGAACTGTTTTGATTACAGTTAAGATATCCTGCCTTCCTTTATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACTGTTTTGATTACAGTTAAGATATCCTGCCTTCCTTTATAAC  200

seq1  CTTTTACCTAATCAATTACAACAGTATCTGCTACACCCCAGGAAACGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCTAATCAATTACAACAGTATCTGCTACACCCCAGGAAACGTCC  250

seq1  CGTGATCTTATTTAAATTTCTCAGCAGTCCTTTGAAGATAACTGCGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATCTTATTTAAATTTCTCAGCAGTCCTTTGAAGATAACTGCGGGAC  300

seq1  TCACCAAAACAAAAGTATGGCTATGGTAAAAGACAAGGAGAAGCCCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAACAAAAGTATGGCTATGGTAAAAGACAAGGAGAAGCCCTTGC  350

seq1  CCAGTTTCTCTGTCAACTTCCTCTTAATCCCTATGTTTTAAATCTACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTCTGTCAACTTCCTCTTAATCCCTATGTTTTAAATCTACATT  400

seq1  AAAAAAAAATATATATATATATATATATATTTAAACCAGGCAGTAGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATATATATATATATATATATATTTAAACCAGGCAGTAGTGGT  450

seq1  ATACACTTTTAATCCCAGCACTTGAAAGACAGGTGGATCTCTGTGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTTTAATCCCAGCACTTGAAAGACAGGTGGATCTCTGTGAATTT  500

seq1  AAGGCCAGACTGTCTACAAATCTAGTTGTAGAACAGCCAAGGCTACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGACTGTCTACAAATCTAGTTGTAGAACAGCCAAGGCTACACAA  550

seq1  AGAAACCTTGTGTTAAAGAACCATATATATATACTTACATAAATATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTGTGTTAAAGAACCATATATATATACTTACATAAATATATAT  600

seq1  TTAATAAACTAAAGCTCTGCTTCATACTGGCTTGTCCTGAAATTATAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAACTAAAGCTCTGCTTCATACTGGCTTGTCCTGAAATTATAATA  650

seq1  ATAATTAATAGAGCAACAACAATAATATTGTTATTATTATTTAACAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATAGAGCAACAACAATAATATTGTTATTATTATTTAACAAAGA  700

seq1  AATCAAAACTCTCCCCAAGTGGAAGTTGCTAAGGGATAGGGTAACTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACTCTCCCCAAGTGGAAGTTGCTAAGGGATAGGGTAACTTCTC  750

seq1  AGGTTGCTGCTGGCAATTATGGGGGTGGGATCCTATATTTTTCTCACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTGCTGGCAATTATGGGGGTGGGATCCTATATTTTTCTCACACT  800

seq1  TTCTGGAAAAGCAGCTTGCTATTGGTCCTTTTTCAAGATGTAATAATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAAAGCAGCTTGCTATTGGTCCTTTTTCAAGATGTAATAATATA  850

seq1  GAAAGTCATATCACGGGCCATCA-TTGACAGAAAAAAAGAGAGAAAATCT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAGTCATATCACGGGCCATCATTTGACAGAAAAAAAGAGAGAAAATCT  900

seq1  GAAAAGGGAATAAAGACAAACGTTTAAAGTTAAAAATTGACTCCTAGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAATAAAGACAAACGTTTAAAGTTAAAAATTGACTCCTAGGGA  950

seq1  ACAGCGGCCAGTAGAATGGAACTGCAAATCCCGGCGAGCCCTTCGCGGCT  999
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  ACAGCGGCCAGTAGAATGGAACTGCAAATCTC-GCGAGCCCTTCGCGGCT  999

seq1  GCGACGGGGACTACATTTCCCAGCGGGCACAGCGGTAGGCCTATGGGGGG  1049
      |||||||||||||||||||| |||||||||||||||| || ||| |||||
seq2  GCGACGGGGACTACATTTCCTAGCGGGCACAGCGGTA-GCTTAT-GGGGG  1047

seq1  CGGTCCGCAGGAGGGGCGGGTGCTGCCCTCTGCCGGGCGCAGCGG  1094
      ||||||||| ||||| |||| |||||| |||||||||| ||||||
seq2  CGGTCCGCA-GAGGGCCGGG-GCTGCCTTCTGCCGGGCCCAGCGG  1090

seq1: chr17_48026321_48027497
seq2: B6Ng01-060C04.g_67_1205 (reverse)

seq1  GTGACCTTGGGTAAGTCATCCCATGTCTCAGCGGTTACGTCTCTTTATCC  50
      ||||||||  |||||||||||||||| ||||||| ||||    ||| |||
seq2  GTGACCTT--GTAAGTCATCCCATGT-TCAGCGGATACG----TTTTTCC  43

seq1  CTCTCTTTATCCGCAAAACTGGGACACTACCCACTTCAGGATCACTCGGA  100
      ||| |||   |||||||||| ||||| || |||||||| ||||| || ||
seq2  CTC-CTT--ACCGCAAAACT-GGACA-TA-CCACTTCAAGATCAATC-GA  86

seq1  GGGATTAAAAGACCAATGCCTGCCGCCGCCGCCTCGTTG-GCATTCGGGA  149
      || ||  ||||||||     ||| ||   |||    ||| |||||| |||
seq2  GGAAT--AAAGACCA-----TGCTGCGCGCGC----TTGTGCATTC-GGA  124

seq1  CATCTGTACCCTTTTCTTCTCGGTAATTCCCAGGTGGCTCCCTACTTAGT  199
      |||| | |||   ||| |||||||||| |||||| |||| ||||| ||||
seq2  CATC-GAACC---TTC-TCTCGGTAATCCCCAGG-GGCT-CCTAC-TAGT  166

seq1  CGCTCCCATCAGCCCACACTTGTTAGCCGAAGGTGCCCAACTTGTGGCTG  249
      ||||||||||||||||||| |||||||||||| |||||||| ||||||||
seq2  CGCTCCCATCAGCCCACAC-TGTTAGCCGAAGATGCCCAAC-TGTGGCTG  214

seq1  TCTCTCTCACTGCCACTCACACCTGCTTCATTCGCACGTGGGCCCCACTC  299
      ||||||||||||||||||||| |||||||||||||||||| | |||||||
seq2  TCTCTCTCACTGCCACTCACA-CTGCTTCATTCGCACGTGAG-CCCACTC  262

seq1  TTCTACCCCAGAATCTTTTAGGATAAAACTCCTCTTTCCTTTCCCCTGCA  349
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTACCCCAGAATCTTTTAGGATAAAACTCCTCTTTCC-TTCCCCTGCA  311

seq1  TCCATCCTCTTTCCAATGCTTCCCCCATTTGATCAGGTTCAGGGCCTCCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTCTTTCCAATGCTTCCCCCATTTGATCAGGTTCAGGGCCTCCG  361

seq1  GACACATCCTTAGGCAAGCGCTCTCCCAGTGAGCCACACCTCCAGCTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCCTTAGGCAAGCGCTCTCCCAGTGAGCCACACCTCCAGCTCCT  411

seq1  GCAGTACCAGGGATGTGTGTGGTAGACACTCACAGCTCGGCAAACACCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACCAGGGATGTGTGTGGTAGACACTCACAGCTCGGCAAACACCCT  461

seq1  CTGAGCACCCACTGTGTACCCAGGGTAACTATTTATATACAATCCACCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACCCACTGTGTACCCAGGGTAACTATTTATATACAATCCACCTG  511

seq1  CGTGGCCCTTCCCAGTGTTGACTGGCATGGCTTCCTGGGGTTTCAGCCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCCTTCCCAGTGTTGACTGGCATGGCTTCCTGGGGTTTCAGCCTA  561

seq1  GTTTACCTTCGGACACTATCTAAATACTCACTGGTGTATCTATGGGAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTTCGGACACTATCTAAATACTCACTGGTGTATCTATGGGAACA  611

seq1  TGTGCTCCTTGCCAGCCCTGGACCCTGACCACCCCAGCTCTTCCCCGCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCTTGCCAGCCCTGGACCCTGACCACCCCAGCTCTTCCCCGCCC  661

seq1  CAAATGTTCCAGACTTCCAGGTGGAGTCAAAACAGAACGCTGCCTCTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTCCAGACTTCCAGGTGGAGTCAAAACAGAACGCTGCCTCTCCC  711

seq1  AAAAGGTTTTCTTTAGAAAGCAGAGATCTGACCTTCCTGGGTCCAGAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTCTTTAGAAAGCAGAGATCTGACCTTCCTGGGTCCAGAGAC  761

seq1  TCTGAGATGATAGGAAGAAAATCTGTCGGGGAGAGGCGAGGAGGTGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGATAGGAAGAAAATCTGTCGGGGAGAGGCGAGGAGGTGGCCT  811

seq1  AGGACCCCTCAGGAAGGTCTTCTGGCCTCTGTTGCCTAGCTTTCACTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCCTCAGGAAGGTCTTCTGGCCTCTGTTGCCTAGCTTTCACTGGC  861

seq1  CTCCAGGGCTAACCTTACATAATGCTTCTTGCTCTCTAAAGCTGGAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGCTAACCTTACATAATGCTTCTTGCTCTCTAAAGCTGGAGAGA  911

seq1  GCACAAAAAGAACAGCTAGGGTGAGAGACGAGGTTGTGGGAGTGGGGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAAGAACAGCTAGGGTGAGAGACGAGGTTGTGGGAGTGGGGGTT  961

seq1  GACCCCAGAGCTGACCATCACAGGTAATTCAAAAGAGACAGTGGTCAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGAGCTGACCATCACAGGTAATTCAAAAGAGACAGTGGTCAGTG  1011

seq1  GAAGGGGACAAATCCCCGATGAGGGGGGGATAGCAACAGAGGCATTTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGACAAATCCCCGATGAGGGGGGGATAGCAACAGAGGCATTTCTG  1061

seq1  AGGATTGGGGGGGGGGGCAGTGAGAGGGGAGATCCTGCCCAGTCTCTGGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGGGGGGGGGGGCAGTGAGAGGGGAGATCCTGCCCAGTCTCTGGG  1111

seq1  GCTGCAGAGTAGCCTGGGAGTTGAATTC  1177
      ||||||||||||||||||||||||||||
seq2  GCTGCAGAGTAGCCTGGGAGTTGAATTC  1139