BAC Information

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BAC

Clone NameB6Ng01-060J16
Chromosome17 (Build37)
Map Location 34,906,185 - 35,053,906
singlet/doubletdoublet
Overlap geneSkiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4
Upstream geneAngptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1
Downstream geneNeu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060J16.bB6Ng01-060J16.g
ACCDH881535DH881536
length1,0811,072
definitionDH881535|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J16, 5' end.DH881536|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,906,185 - 34,907,269)(35,052,820 - 35,053,906)
sequence
gaattcagtaagaatgttacctattcagtaacattcaaattctcttctag
tatagacagtgaaactaattaggcattacaatttactcaaacagagctag
aaaagctcagggctagtctacatagtaattacttaggacaatagctgagt
cacacccaaacacaggaatacacaatgagctaggaaatagatgggttgtc
ccctgaaccgtactcagtactcggtaccagataatggcaacagcctacaa
ctggccacacacagttaaatgcagcatcctaactaacaactgtacaggta
tttcctgacagcatttcatttgcatctctctaactattagtgattcttcc
tatgcttgccagctgtggaggtttctcttctgagacctagagttatgtta
tgttgtgttatatatgtccgtgattgttatgttgtattatatacatgccc
atttaaggtttaggggagaaacctagagttcaccagggttatggagctgg
gattcgatcccaggtagcctggatcttaaccactgcactgtcctgcctga
gtcctggcccttctaccaggggccgcttacccaccctgctcaccttgacc
agacccctgctgaaaagcatttccacaatctccttaaggatgggcaggat
gccgctgtggtgcacacccaggccacagcgaaggagctccgacatgtgca
ggacctgcagctcgaggagggaggagagggcaatggtcagagaagatgca
gatggaaccccttggcaggaggggcatgtctcagatcaccacatccctac
ctgcatcagcaggagggccaggtttcagatcaacacatccctacctgtat
ttacagacacacacctggggtagctgtcagtgagagcctcagagccgagc
aaggcagcactgcaggagaggtggatctcactcttctccaagcttgtcgt
gaggtctagagaggtgaggctcatcacagcgtccttgggagaaggtgaca
ctaccactggccactgagctcgggtccggagggaagccagcaggaacagt
acacctcgcgtcctgagggaggaggggaggg
gaattcttctgctgaaatattgcacagataataacaaacatacatacata
catagagagagagagagagagagatcatgtgcagttgcttcttttcctca
catatacacacacctgagtagctagcacccaagtccagaagtagagtgac
ccagtaccccgagtcccctcaagtccttctagacaacacagatgcctcag
gggaccaggttcttgcattaaaccaaatcctccccacatctctcggggcc
actgcccgtagctcacctgtttttgatggggcctcgaaaggaggggtcat
atttggccgaattccctggaggggggagtagagaataaggcattgagggt
ctcttcccccacatccagtcgctctcagacactcaatggtcccaggcgcc
tgtctagctcactaacaggactggacctggattagcagtatcctggtcag
agagcagccccatggttgccagcttgtgactgctactgggcaacagctgg
gaggtggggcctttatttttggcaatcttagatatcaaatctatggtttc
ttacatgggaggcaagtgctctgccactaaactgtaaccacagccaacta
ttttatttatttatttactttttttttttttttttggagacagggtttct
ttgtaaagttttagcttcttggaactatctctgtagcccaggctggcctt
gaactcacagagatctgcctggctctgtctcccaggtgttgggattaaag
gcatgtgtctccaggccgcagccatttgttttaaattttactttgtattt
cagaaaagatcttgctgagttctccaagctggacttaaacttgctttagc
ctcctgactggtttttagaataagcttctgaagtggttcttaaagggact
caaggcttctgagtagtgtgtaaccaggttctgggacttcctcttagtgg
ctcgcagacccagtcctatctctgtctccagcctgttcagtcatctctgg
actatcagtctgggagccctcagggacatcatcacttatctcagcctctg
tccaagaattgacaagaaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34906185_34907269
seq2: B6Ng01-060J16.b_48_1128

seq1  GAATTCAGTAAGAATGTTACCTATTCAGTAACATTCAAATTCTCTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGAATGTTACCTATTCAGTAACATTCAAATTCTCTTCTAG  50

seq1  TATAGACAGTGAAACTAATTAGGCATTACAATTTACTCAAACAGAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAGTGAAACTAATTAGGCATTACAATTTACTCAAACAGAGCTAG  100

seq1  AAAAGCTCAGGGCTAGTCTACATAGTAATTACTTAGGACAATAGCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCAGGGCTAGTCTACATAGTAATTACTTAGGACAATAGCTGAGT  150

seq1  CACACCCAAACACAGGAATACACAATGAGCTAGGAAATAGATGGGTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAACACAGGAATACACAATGAGCTAGGAAATAGATGGGTTGTC  200

seq1  CCCTGAACCGTACTCAGTACTCGGTACCAGATAATGGCAACAGCCTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACCGTACTCAGTACTCGGTACCAGATAATGGCAACAGCCTACAA  250

seq1  CTGGCCACACACAGTTAAATGCAGCATCCTAACTAACAACTGTACAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACACACAGTTAAATGCAGCATCCTAACTAACAACTGTACAGGTA  300

seq1  TTTCCTGACAGCATTTCATTTGCATCTCTCTAACTATTAGTGATTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACAGCATTTCATTTGCATCTCTCTAACTATTAGTGATTCTTCC  350

seq1  TATGCTTGCCAGCTGTGGAGGTTTCTCTTCTGAGACCTAGAGTTATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGCCAGCTGTGGAGGTTTCTCTTCTGAGACCTAGAGTTATGTTA  400

seq1  TGTTGTGTTATATATGTCCGTGATTGTTATGTTGTATTATATACATGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTATATATGTCCGTGATTGTTATGTTGTATTATATACATGCCC  450

seq1  ATTTAAGGTTTAGGGGAGAAACCTAGAGTTCACCAGGGTTATGGAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTTTAGGGGAGAAACCTAGAGTTCACCAGGGTTATGGAGCTGG  500

seq1  GATTCGATCCCAGGTAGCCTGGATCTTAACCACTGCACTGTCCTGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGATCCCAGGTAGCCTGGATCTTAACCACTGCACTGTCCTGCCTGA  550

seq1  GTCCTGGCCCTTCTACCAGGGGCCGCTTACCCACCCTGCTCACCTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCCCTTCTACCAGGGGCCGCTTACCCACCCTGCTCACCTTGACC  600

seq1  AGACCCCTGCTGAAAAGCATTTCCACAATCTCCTTAAGGATGGGCAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTGCTGAAAAGCATTTCCACAATCTCCTTAAGGATGGGCAGGAT  650

seq1  GCCGCTGTGGTGCACACCCAGGCCACAGCGAAGGAGCTCCGACATGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGTGGTGCACACCCAGGCCACAGCGAAGGAGCTCCGACATGTGCA  700

seq1  GGACCTGCAGCTCGAGGAGGGAGGAGAGGGCAATGGTCAGAGAAGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGCAGCTCGAGGAGGGAGGAGAGGGCAATGGTCAGAGAAGATGCA  750

seq1  GATGGAACCCCTTGGCAGGAGGGGCATGTCTCAGATCACCACATCCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACCCCTTGGCAGGAGGGGCATGTCTCAGATCACCACATCCCTAC  800

seq1  CTGCATCAGCAGGAGGGCCAGGTTTCAGATCAACACATCCCTACCTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGCAGGAGGGCCAGGTTTCAGATCAACACATCCCTACCTGTAT  850

seq1  TTACAGACACACACCTGGGGTAGCTGTCAGTGAGAGCCTCAGAGCCGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACACACACCTGGGGTAGCTGTCAGTGAGAGCCTCAGAGCCGAGC  900

seq1  AAGGCAGCACTGCAGGAAGAGGTGGATCTCACTCTTCTCCAAGCTTGTCG  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGCAGCACTGCAGG-AGAGGTGGATCTCACTCTTCTCCAAGCTTGTCG  949

seq1  TGAGGTCTAGAGAGGTGAGGCCCATCACAGCGTCCTTGGGAGAAGGTGAA  1000
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  TGAGGTCTAGAGAGGTGAGGCTCATCACAGCGTCCTTGGGAGAAGGTG-A  998

seq1  CACTACCACTGGCAACTGAGCCCGGGTCCGGAGGGAAGCCAGCAGGAACA  1050
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CACTACCACTGGCCACTGAGCTCGGGTCCGGAGGGAAGCCAGCAGGAACA  1048

seq1  GGTACACCCCGCGGTCCTGAGGGAGGAGGGGAGGG  1085
       ||||||| ||| ||||||||||||||||||||||
seq2  -GTACACCTCGC-GTCCTGAGGGAGGAGGGGAGGG  1081

seq1: chr17_35052820_35053906
seq2: B6Ng01-060J16.g_65_1136 (reverse)

seq1  ATCCTTTCTTTGTCATATCCTTGGGCCAGAGGGCTGAGATAAGTGATGAT  50
      ||||||   |||||| || ||| || |||| |||||||||||||||||||
seq2  ATCCTT--CTTGTCA-ATTCTT-GGACAGA-GGCTGAGATAAGTGATGAT  45

seq1  GGTCCCCTGAGGGGCTCCCAGACTGGATAGTCCAGAGATGACTTGGAACA  100
      |   |||||| ||||||||||||| ||||||||||||||||||  |||||
seq2  G--TCCCTGA-GGGCTCCCAGACT-GATAGTCCAGAGATGACT--GAACA  89

seq1  GGCTGGAGGACAGAGATAGGACTGGGGTCTGCGAGCCACTAAGAGGGAGT  150
      ||||||| ||||||||||||||| |||||||||||||||||||||| |||
seq2  GGCTGGA-GACAGAGATAGGACT-GGGTCTGCGAGCCACTAAGAGGAAGT  137

seq1  CCCAGAACCTGGGTTACACACTACTCAGAAGCCTTGAGTCCCTTTAAGAA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACCT-GGTTACACACTACTCAGAAGCCTTGAGTCCCTTTAAGAA  186

seq1  CCACTTTCAGAAGCTTATTCTAAAAACCAGTCAGGAGGCTGAAGCAAGTT  250
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAC-TTCAGAAGCTTATTCTAAAAACCAGTCAGGAGGCTAAAGCAAGTT  235

seq1  TAAGTCCAGCTTGGAGAACTCAGCAAGATCTTGTCTGAAATACAAAGTAA  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGTCCAGCTTGGAGAACTCAGCAAGATCTTTTCTGAAATACAAAGTAA  285

seq1  AATTTAAAACAAATGGCTGCGGCCTGGAGACACATGCCTTTAATCCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACAAATGGCTGCGGCCTGGAGACACATGCCTTTAATCCCAAC  335

seq1  ACCTGGGAGACAGAGCCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGACAGAGCCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGG  385

seq1  GCTACAGAGATAGTTCCAAGAAGCTAAAACTTTACAAAGAAACCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAGATAGTTCCAAGAAGCTAAAACTTTACAAAGAAACCCTGTCT  435

seq1  CCAAAAAAAAAAAAAAAAAGTAAATAAATAAATAAAATAGTTGGCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAAAAAAAGTAAATAAATAAATAAAATAGTTGGCTGTGG  485

seq1  TTACAGTTTAGTGGCAGAGCACTTGCCTCCCATGTAAGAAACCATAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTAGTGGCAGAGCACTTGCCTCCCATGTAAGAAACCATAGATT  535

seq1  TGATATCTAAGATTGCCAAAAATAAAGGCCCCACCTCCCAGCTGTTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTAAGATTGCCAAAAATAAAGGCCCCACCTCCCAGCTGTTGCCC  585

seq1  AGTAGCAGTCACAAGCTGGCAACCATGGGGCTGCTCTCTGACCAGGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGTCACAAGCTGGCAACCATGGGGCTGCTCTCTGACCAGGATAC  635

seq1  TGCTAATCCAGGTCCAGTCCTGTTAGTGAGCTAGACAGGCGCCTGGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCCAGGTCCAGTCCTGTTAGTGAGCTAGACAGGCGCCTGGGACC  685

seq1  ATTGAGTGTCTGAGAGCGACTGGATGTGGGGGAAGAGACCCTCAATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGTCTGAGAGCGACTGGATGTGGGGGAAGAGACCCTCAATGCCT  735

seq1  TATTCTCTACTCCCCCCTCCAGGGAATTCGGCCAAATATGACCCCTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTACTCCCCCCTCCAGGGAATTCGGCCAAATATGACCCCTCCTT  785

seq1  TCGAGGCCCCATCAAAAACAGGTGAGCTACGGGCAGTGGCCCCGAGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCCCATCAAAAACAGGTGAGCTACGGGCAGTGGCCCCGAGAGAT  835

seq1  GTGGGGAGGATTTGGTTTAATGCAAGAACCTGGTCCCCTGAGGCATCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGGATTTGGTTTAATGCAAGAACCTGGTCCCCTGAGGCATCTGT  885

seq1  GTTGTCTAGAAGGACTTGAGGGGACTCGGGGTACTGGGTCACTCTACTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGAAGGACTTGAGGGGACTCGGGGTACTGGGTCACTCTACTTC  935

seq1  TGGACTTGGGTGCTAGCTACTCAGGTGTGTGTATATGTGAGGAAAAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGGTGCTAGCTACTCAGGTGTGTGTATATGTGAGGAAAAGAAG  985

seq1  CAACTGCACATGATCTCTCTCTCTCTCTCTCTCTATGTATGTATGTATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCACATGATCTCTCTCTCTCTCTCTCTCTATGTATGTATGTATGT  1035

seq1  TTGTTATTATCTGTGCAATATTTCAGCAGAAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTATCTGTGCAATATTTCAGCAGAAGAATTC  1072