BAC Information

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BAC

Clone NameB6Ng01-061N20
Chromosome17 (Build37)
Map Location 17,289,806 - 17,290,729
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97
Downstream geneEG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061N20.bB6Ng01-061N20.g
ACCDH882430DH882431
length1,1531,074
definitionDH882430|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N20, 5' end.DH882431|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaattcccaacagataatttcaaacagctgagaaacacttgaaga
aatgttcaccatccttaatcattatgtgtatcctccctcagccctgaatc
acgctgatccagactttgaccttgctgccactgagaaggaaattaccaaa
ggtggagccttccaacctggatggctgtcacctgccactgctctctccaa
gacactgctacctgctgagaagcccctgagacattccagaggttcatcct
attctgcacaccacctacaggctggctccagacaccaagaatggactggc
aggggatgggccttccccttttataagtaaactctcttagtaaaatggag
ggccttgaacagaatcatgtcttggctccattattctctcaccacctaag
tctcttttagccccagcctgcatccctggtgtacccggttcaagtaggcc
acaggcctgcatacaacaattatggaaatgcaaataaaaactactttgta
cttccatagtacatgtcagaatggttacactcaatcacactagtgattgt
ttatatttgtgagaatatagagtaattttacttcgactattctgcttgta
ggtatgcaaattaatacaaatgttatggcaatcaatatcatgatgtctta
ggaaagtgggagtttatataacagatccatctatatcagtcttgggcaaa
aacacaaagggaactccatccacaaaatgaaaagacacatggtcaactat
gtacatagcagctttatttgtactagccagaagctaaagacaacttagat
gtcttaaagctgaagaatgaataaagaaaatgtgctatgattatataatg
gaagtatcactaacctgctaaaataaaacaacataaaatgaatgcatgaa
aagaggctaatgaatgcaactagaagaatatcacactaaatagataccca
aatctagaatgatagaaatggtatatattcactgataaatggatactagg
cttttggtaaactataatcaagctatcctcagagattcagagaggttttt
taagagagaaataattagggatgcatggatcttgttggaaaggggagctt
agagtagacattcaggtagacttgagttgaatggaatatgaggggtgaag
aac
gaattctaatgaagtattaatttgcatttccattttggctaaggatggag
aacatttctctacgtgtttctcagccatttgaagttgtctgttgggaact
gaattctttgttgaaatgtgttgtgtattacaactctatcatgtagagat
tggtaaaaaactatcctcacattccatactttgcctctttctttttctaa
ttaacttggcttttgccttacagaaacatcactatttcttgagttccaat
tctttaattgctgatcttaatgccttcgacattagtgtttttcagaagtc
tctgctgtgacagtgctgccggggatgttctgcccttagggttcactcag
ggtcactgtgtctggctttaagtcttttttttttttttggatggactctt
tttttttttaagattttatttatttatttattttcagacactccagaaga
gggcatccgatctcattacagatggttgtgagccagcatgtggttgctgg
gatttgaactcagcaccttcggaagagcagtgggggctcttaaccactga
gccatctcgccagccctggctttaagtctttaatccacttggaattgagt
tttgggtagggtaagtaatatagatatacttgcattcttttgcatgtaga
gctacagtttaataagcaatatgaagttaggtatggacatagtggggtgt
gaccaatgagtcttgtacctgggacagggcccaggtttgaacctccataa
gttgctgagcatggcatggccttggtgggcccagagtgacattttatctg
ccccaggacagggtcgggtgtgatccttcagaatgtcaatgtttgtataa
taatgtacatgtttcttggacacactagcagtggaatactctttccttct
aagtaatatcctccctgctatgtattgacttcagatgataaaaatagcag
gagccatagttgaggcccactatttctcatcaatggtaaacactgggatt
tcaaacgcatttgatgctgagggagagctgttaatatgtgagtttgaaat
attaagttatcacttatggaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17289806_17290729
seq2: B6Ng01-061N20.g_239_1144

seq1  ACATTCCATACTTTGCCTCTTTCTTTTTCTAATTAACTTGGCTTTTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATACTTTGCCTCTTTCTTTTTCTAATTAACTTGGCTTTTGCCT  50

seq1  TACAGAAACATCACTATTTCTTGAGTTCCAATTCTTTAATTGCTGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAACATCACTATTTCTTGAGTTCCAATTCTTTAATTGCTGATCTT  100

seq1  AATGCCTTCGACATTAGTGTTTTTCAGAAGTCTCTGCTGTGACAGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCGACATTAGTGTTTTTCAGAAGTCTCTGCTGTGACAGTGCTG  150

seq1  CCGGGGATGTTCTGCCCTTAGGGTTCACTCAGGGTCACTGTGTCTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGATGTTCTGCCCTTAGGGTTCACTCAGGGTCACTGTGTCTGGCTT  200

seq1  TAAGTCTTTTTTTTTTTTTTGGATGGACTCTTTTTTTTTTTAAGATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTTTTTTTTTTTTTGGATGGACTCTTTTTTTTTTTAAGATTTTA  250

seq1  TTTATTTATTTATTTTCAGACACTCCAGAAGAGGGCATCCGATCTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTTCAGACACTCCAGAAGAGGGCATCCGATCTCATTA  300

seq1  CAGATGGTTGTGAGCCAGCATGTGGTTGCTGGGATTTGAACTCAGCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTGAGCCAGCATGTGGTTGCTGGGATTTGAACTCAGCACCT  350

seq1  TCGGAAGAGCAGTGGGGGCTCTTAACCACTGAGCCATCTCGCCAGCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAGCAGTGGGGGCTCTTAACCACTGAGCCATCTCGCCAGCCCTG  400

seq1  GCTTTAAGTCTTTAATCCACTTGGAATTGAGTTTTGGGTAGGGTAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGTCTTTAATCCACTTGGAATTGAGTTTTGGGTAGGGTAAGTAA  450

seq1  TATAGATATACTTGCATTCTTTTGCATGTAGAGCTACAGTTTAATAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATATACTTGCATTCTTTTGCATGTAGAGCTACAGTTTAATAAGCA  500

seq1  ATATGAAGTTAGGTATGGACATAGTGGGGTGTGACCAATGAGTCTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTTAGGTATGGACATAGTGGGGTGTGACCAATGAGTCTTGTAC  550

seq1  CTGGGACAGGGCCCAGGTTTGAACCTCCATAAGTTGCTGAGCATGGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAGGGCCCAGGTTTGAACCTCCATAAGTTGCTGAGCATGGCATG  600

seq1  GCCTTGGTGGGCCCAGAGTGACATTTTATCTGCCCCAGGACAGGGTCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTGGGCCCAGAGTGACATTTTATCTGCCCCAGGACAGGGTCGGG  650

seq1  TGTGATCCTCCAGAAGTGTCAATGTTTGTATAATAATGTACATGTTTCCT  700
      ||||||||| ||||| |||||||||||||||||||||||||||||||| |
seq2  TGTGATCCTTCAGAA-TGTCAATGTTTGTATAATAATGTACATGTTTCTT  699

seq1  GGACACACTAGCAGTGGAATACTCTTTCCTTCTAAGTAATATCCTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACTAGCAGTGGAATACTCTTTCCTTCTAAGTAATATCCTCCCTG  749

seq1  CTATTGTTATTGACTCCAAGATGATTAGAAATAGCAGGAGCCCATAAGTT  800
      ||||   |||||||| | |||||| || |||||||||||| |||| ||||
seq2  CTAT--GTATTGACTTC-AGATGA-TAAAAATAGCAGGAG-CCAT-AGTT  793

seq1  GAGGGCACAACTATTTCTCATCAAAATGGTAAACACTGAGAATTTCAGAA  850
      ||||   | |||||||||||||  |||||||||||||| | |||||| ||
seq2  GAGG--CCCACTATTTCTCATC--AATGGTAAACACTG-GGATTTCA-AA  837

seq1  CAGCATTTGATGCTGAGGGGAAGAGCTGTAAATATGTGAGTTTGAAAATA  900
      | |||||||||||||||||  |||||||| |||||||||||||| |||||
seq2  C-GCATTTGATGCTGAGGG--AGAGCTGTTAATATGTGAGTTTG-AAATA  883

seq1  TATAAGTTATCAACTATGGAAAAA  924
      | ||||||||||  ||||||||||
seq2  T-TAAGTTATCACTTATGGAAAAA  906