BAC Information

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BAC

Clone NameB6Ng01-062C23
Chromosome17 (Build37)
Map Location 49,750,547 - 49,922,893
singlet/doubletdoublet
Overlap geneKif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062C23.bB6Ng01-062C23.g
ACCDH882658DH882659
length1,128456
definitionDH882658|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C23, 5' end.DH882659|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,921,736 - 49,922,893)(49,750,547 - 49,751,008)
sequence
gaattcaaggatctctgcctgccctctgcctcttgaacgttggaattaaa
gggcgtgccaccacgtccagctatatgtttacttttgagaatagcagaag
caggactttcagcaagctaatgttacctaccttttaacgccttcacagca
gtcaccctatgcctgaatctgatgttcttatcttgctaaagataggaaca
gaactcgaattgtaaggctctttagagtatagctacctctatacctgcat
ctgaattaaagtaacaatagccatagaaataggtttttaagtagtttata
tttttgcaatatttgatctaaaaactccatttttataaattgccttcaat
cacgggaatttccattgtgagatttactattttcttgtttagggctcagt
ctttttttttttttttggctactaataatttttctatattttaaaatttc
agacacatgagtgttatgagcagatctactagttaaattcagagacgggg
tcatggctatggacttgagagccatccacgttgggacttgagaatacctg
ggcctgtgtaactaatgcacttgtaaataaccttggctgttccctcccta
cgagaagagcaatgctctagaagcctaacaggacagaaaacaaagaatcc
tggcacctgagcaaaagcccgacacagaaagagcagaacaggatggccga
agttgcacaccagaagtatcttagtgtctttacattgtagctgacttcag
cacagatctagaagttgcacaccagaagtatcttagtgtctttacactgt
agctgactttagcacagatctcggtggctgctcaatccaaccaagaaaaa
agcttccagggagagagccatagagaaaggacgggaagataaaggttgac
aaagagaaacccaatcttacaaagctatttacctcgacctccaggcacga
gactttatgtactaccggttattccaacagaaaagggaaggtcttcctca
gagcggcacagaagtcagggatgagaggagaagactgcagaaatgcattc
agacagacagctggcggtgatgaatttgttcttctttggtcggtttactg
aagccttgctaagctgaatcgaataagt
tcattattggccttgctttgtggagacctggagtaaggttagtaaaactg
tgggtcttcatatacatgtcccacctggtaaggagcatacagggtagggt
ggtcatgaagaggttcctggacaagggaaggatcacaacctctgcaagtt
catgtgtgcaaagacgctacaatgaccctgtcatcccagaaaataccatt
tgttttgtgtctctccaccacaagatcaagccagccgcattccaacatgg
agtggggaggggcttaagaagggcttaagaagtcccgcagtggctgctgg
gggtaggacagtcagtttctttggggatctggcttctgatagattgcccc
atgttccagtggatggtcgtacaccacgtacatactggatgcactaagaa
catcagtgggattaaaaccaaaaggggggttatgtatgtatgtatgtatg
tatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49921736_49922893
seq2: B6Ng01-062C23.b_48_1175 (reverse)

seq1  ACTTAATTCGTATTCAGCTTAGCAAGAGCTTTCCAAGGGTAAAACACGAC  50
      |||| ||||| ||||||||||||||| ||||  ||   |||||   ||||
seq2  ACTT-ATTCG-ATTCAGCTTAGCAAG-GCTT--CA---GTAAA--CCGAC  40

seq1  CATAAGAAAAGAAACAAAATGTCAAATCCACCGCCAGCTGCTCCTGTCTG  100
      || |||||    ||||||   |||    ||||||||||||   |||||||
seq2  CA-AAGAA---GAACAAA--TTCA---TCACCGCCAGCTG--TCTGTCTG  79

seq1  AATGCATTTTCTGCAGTCTTCTTCCTCTCATCCCCTGAC-TCTGTGCCGC  149
      |||||| |||||||||||||| ||||||||| ||||||| ||||||||||
seq2  AATGCA-TTTCTGCAGTCTTC-TCCTCTCAT-CCCTGACTTCTGTGCCGC  126

seq1  TCTGAGGAAGACCTTCCCTTTTCTGTTGGAAATAACCGGTAGTAACATAA  199
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TCTGAGGAAGACCTTCCCTTTTCTGTTGG-AATAACCGGTAGT-ACATAA  174

seq1  AGTCTCGGTGCCTGGAGGTTCGAGGTAAATAGCTTTGTAAGATTGGGTTT  249
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTCTC-GTGCCTGGAGG-TCGAGGTAAATAGCTTTGTAAGATTGGGTTT  222

seq1  CCTCCTTTGTCAACCTTTATCTTCCCGTCCTTTCTCCTATGGCTCTCTCC  299
      |   ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  C--TCTTTGTCAACCTTTATCTTCCCGTCCTTTCT-CTATGGCTCTCTCC  269

seq1  CTGGAAGCTTTTTTCTTGGTTGGATTGAGCAGCCACCGAGATCTGTGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCTTTTTTCTTGGTTGGATTGAGCAGCCACCGAGATCTGTGCTA  319

seq1  AAGTCAGCTACAGTGTAAAGACACTAAGATACTTCTGGTGTGCAACTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCTACAGTGTAAAGACACTAAGATACTTCTGGTGTGCAACTTCT  369

seq1  AGATCTGTGCTGAAGTCAGCTACAATGTAAAGACACTAAGATACTTCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGCTGAAGTCAGCTACAATGTAAAGACACTAAGATACTTCTGG  419

seq1  TGTGCAACTTCGGCCATCCTGTTCTGCTCTTTCTGTGTCGGGCTTTTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACTTCGGCCATCCTGTTCTGCTCTTTCTGTGTCGGGCTTTTGCT  469

seq1  CAGGTGCCAGGATTCTTTGTTTTCTGTCCTGTTAGGCTTCTAGAGCATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCAGGATTCTTTGTTTTCTGTCCTGTTAGGCTTCTAGAGCATTG  519

seq1  CTCTTCTCGTAGGGAGGGAACAGCCAAGGTTATTTACAAGTGCATTAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCGTAGGGAGGGAACAGCCAAGGTTATTTACAAGTGCATTAGTT  569

seq1  ACACAGGCCCAGGTATTCTCAAGTCCCAACGTGGATGGCTCTCAAGTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCCCAGGTATTCTCAAGTCCCAACGTGGATGGCTCTCAAGTCCA  619

seq1  TAGCCATGACCCCGTCTCTGAATTTAACTAGTAGATCTGCTCATAACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGACCCCGTCTCTGAATTTAACTAGTAGATCTGCTCATAACACT  669

seq1  CATGTGTCTGAAATTTTAAAATATAGAAAAATTATTAGTAGCCAAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCTGAAATTTTAAAATATAGAAAAATTATTAGTAGCCAAAAAAA  719

seq1  AAAAAAAAGACTGAGCCCTAAACAAGAAAATAGTAAATCTCACAATGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGACTGAGCCCTAAACAAGAAAATAGTAAATCTCACAATGGAA  769

seq1  ATTCCCGTGATTGAAGGCAATTTATAAAAATGGAGTTTTTAGATCAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGTGATTGAAGGCAATTTATAAAAATGGAGTTTTTAGATCAAATA  819

seq1  TTGCAAAAATATAAACTACTTAAAAACCTATTTCTATGGCTATTGTTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAATATAAACTACTTAAAAACCTATTTCTATGGCTATTGTTACT  869

seq1  TTAATTCAGATGCAGGTATAGAGGTAGCTATACTCTAAAGAGCCTTACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAGATGCAGGTATAGAGGTAGCTATACTCTAAAGAGCCTTACAA  919

seq1  TTCGAGTTCTGTTCCTATCTTTAGCAAGATAAGAACATCAGATTCAGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGTTCTGTTCCTATCTTTAGCAAGATAAGAACATCAGATTCAGGCA  969

seq1  TAGGGTGACTGCTGTGAAGGCGTTAAAAGGTAGGTAACATTAGCTTGCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGACTGCTGTGAAGGCGTTAAAAGGTAGGTAACATTAGCTTGCTG  1019

seq1  AAAGTCCTGCTTCTGCTATTCTCAAAAGTAAACATATAGCTGGACGTGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTGCTTCTGCTATTCTCAAAAGTAAACATATAGCTGGACGTGGT  1069

seq1  GGCACGCCCTTTAATTCCAACGTTCAAGAGGCAGAGGGCAGGCAGAGATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCCCTTTAATTCCAACGTTCAAGAGGCAGAGGGCAGGCAGAGATC  1119

seq1  CTTGAATTC  1158
      |||||||||
seq2  CTTGAATTC  1128

seq1: chr17_49750547_49751008
seq2: B6Ng01-062C23.g_67_528

seq1  GAATTCTCATTATTGGCCTTGCTTTGTGGAGACCTGGAGTAAGGTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTATTGGCCTTGCTTTGTGGAGACCTGGAGTAAGGTTAGTA  50

seq1  AAACTGTGGGTCTTCATATACATGTCCCACCTGGTAAGGAGCATACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGGGTCTTCATATACATGTCCCACCTGGTAAGGAGCATACAGGG  100

seq1  TAGGGTGGTCATGAAGAGGTTCCTGGACAAGGGAAGGATCACAACCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGTCATGAAGAGGTTCCTGGACAAGGGAAGGATCACAACCTCTG  150

seq1  CAAGTTCATGTGTGCAAAGACGCTACAATGACCCTGTCATCCCAGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCATGTGTGCAAAGACGCTACAATGACCCTGTCATCCCAGAAAAT  200

seq1  ACCATTTGTTTTGTGTCTCTCCACCACAAGATCAAGCCAGCCGCATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTTTTGTGTCTCTCCACCACAAGATCAAGCCAGCCGCATTCCA  250

seq1  ACATGGAGTGGGGAGGGGCTTAAGAAGGGCTTAAGAAGTCCCGCAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGTGGGGAGGGGCTTAAGAAGGGCTTAAGAAGTCCCGCAGTGGC  300

seq1  TGCTGGGGGTAGGACAGTCAGTTTCTTTGGGGATCTGGCTTCTGATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGGTAGGACAGTCAGTTTCTTTGGGGATCTGGCTTCTGATAGAT  350

seq1  TGCCCCATGTTCCAGTGGATGGTCGTACACCACGTACATACTGGATGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATGTTCCAGTGGATGGTCGTACACCACGTACATACTGGATGCAC  400

seq1  TAAGAACATCAGTGGGATTAAAACCAAAAGGGGGGTTATGTATGTATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATCAGTGGGATTAAAACCAAAAGGGGGGTTATGTATGTATGTA  450

seq1  TGTATGTATGTA  462
      ||||||||||||
seq2  TGTATGTATGTA  462