BAC Information

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BAC

Clone NameB6Ng01-067D09
Chromosome17 (Build37)
Map Location 34,906,061 - 35,098,218
singlet/doubletdoublet
Overlap geneSkiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b
Upstream geneAngptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1
Downstream geneHspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067D09.bB6Ng01-067D09.g
ACCDH886170DH886171
length1,083448
definitionDH886170|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D09, 5' end.DH886171|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,906,061 - 34,906,925)(35,097,765 - 35,098,218)
sequence
gaattcagtaagaatgttacctattcagtaacattagtctggtgcattga
tctgtgtgctctctttcagtattgtcttactgtaagtgcctttaaggatt
gatttttacatatagttaagcctctaccagtgttccaatggttccaagta
aatccttgaagctgaccctgagcttggaattcagtaagaatgttacctat
tcagtaacattagtctggtgcattgatctgtgtgctctctttcagtattg
tcttactgtaagtgcctttaaggattgatttttacatatagttaagcctc
taccagtgttccaatggttccaagtaaatccttgaagctgaccctgagct
tggaattcagtaagaatgttacctattcagtaacattcaaattctcttct
agtatagacagtgaaactaattaggcattacaatttactcaaacagagct
agaaaagctcagggctagtctacatagtaattacttaggacaatagctga
gtcacacccaaacacaggaatacacaatgagctaggaaatagatgggttg
tcccctgaaccgtactcagtactcggtaccagataatggcaacagcctac
aactggccacacacagttaaatgcagcatcctaactaacaactgtacagg
tatttcctgacagcatttcatttgcatctctctaactattagtgattctt
cctatgcttgccagctgtggaggtttctcttctgagacctagagttatgt
tatgttgtgttatatatgtccgtgattgttatgttgtattatatacatgc
ccatttaaagtttaggggagaaacctagagttcaccagggttatggagct
gggattcgatcccatgtagcctggatctaaaccactgcactgttctgcct
gagtcctggcccttctaccagggccgcttacccaccctgctcaccttgac
cagacccctgctgaaaagcatttcacattctcttaaggatgggcagatgc
cgctgtgttccaccaggcacagcgaagaactccgactatgtgcaggaact
tgcagcttgaggaggagataggcaatgttcaga
atcaggtctaactatggaacaagttgctgctggccaattcttcccacaca
aacagaggatctatgaagcagcatcttccaaacactggctgagatcagca
aactacagcacagacaactaaatgcccttggattcccagaagagatattc
tgatatggacttatgtacacacacacacacacacacacacacacacacac
acacacacagagagagagagagagagaaagagagagagagagagagagag
agggagagagagagagagagagagaggcaggccaatggagttgtatttaa
aagcagggctccctccagaaactgcctcctccaattcacactcagagacc
tgtgtgtgtagtttgtagtgcttgtctggaattcctgttcttaggagtca
atgctagaggagcaagagtttaagatcagctttggctacacagtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34906061_34906925
seq2: B6Ng01-067D09.b_269_1123

seq1  TGTGTGCTCTCTTTCAGTATTGTCTTACTGTAAGTGCCTTTAAGGATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTCTCTTTCAGTATTGTCTTACTGTAAGTGCCTTTAAGGATTGA  50

seq1  TTTTTACATATAGTTAAGCCTCTACCAGTGTTCCAATGGTTCCAAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATATAGTTAAGCCTCTACCAGTGTTCCAATGGTTCCAAGTAAA  100

seq1  TCCTTGAAGCTGACCCTGAGCTTGGAATTCAGTAAGAATGTTACCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGCTGACCCTGAGCTTGGAATTCAGTAAGAATGTTACCTATTC  150

seq1  AGTAACATTCAAATTCTCTTCTAGTATAGACAGTGAAACTAATTAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATTCAAATTCTCTTCTAGTATAGACAGTGAAACTAATTAGGCAT  200

seq1  TACAATTTACTCAAACAGAGCTAGAAAAGCTCAGGGCTAGTCTACATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTACTCAAACAGAGCTAGAAAAGCTCAGGGCTAGTCTACATAGT  250

seq1  AATTACTTAGGACAATAGCTGAGTCACACCCAAACACAGGAATACACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTAGGACAATAGCTGAGTCACACCCAAACACAGGAATACACAAT  300

seq1  GAGCTAGGAAATAGATGGGTTGTCCCCTGAACCGTACTCAGTACTCGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGAAATAGATGGGTTGTCCCCTGAACCGTACTCAGTACTCGGTA  350

seq1  CCAGATAATGGCAACAGCCTACAACTGGCCACACACAGTTAAATGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAATGGCAACAGCCTACAACTGGCCACACACAGTTAAATGCAGCA  400

seq1  TCCTAACTAACAACTGTACAGGTATTTCCTGACAGCATTTCATTTGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTAACAACTGTACAGGTATTTCCTGACAGCATTTCATTTGCATC  450

seq1  TCTCTAACTATTAGTGATTCTTCCTATGCTTGCCAGCTGTGGAGGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACTATTAGTGATTCTTCCTATGCTTGCCAGCTGTGGAGGTTTCT  500

seq1  CTTCTGAGACCTAGAGTTATGTTATGTTGTGTTATATATGTCCGTGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGACCTAGAGTTATGTTATGTTGTGTTATATATGTCCGTGATTG  550

seq1  TTATGTTGTATTATATACATGCCCATTTAAGGTTTAGGGGAGAAACCTAG  600
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATGTTGTATTATATACATGCCCATTTAAAGTTTAGGGGAGAAACCTAG  600

seq1  AGTTCACCAGGGTTATGGAGCTGGGATTCGATCCCAGGTAGCCTGGATCT  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTCACCAGGGTTATGGAGCTGGGATTCGATCCCATGTAGCCTGGATCT  650

seq1  TAACCACTGCACTGTCCTGCCTGAGTCCTGGCCCTTCTACCAGGGGCCGC  700
       |||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AAACCACTGCACTGTTCTGCCTGAGTCCTGGCCCTTCTACCA-GGGCCGC  699

seq1  TTACCCACCCTGCTCACCTTGACCAGACCCCTGCTGAAAAGCATTTCCAC  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTACCCACCCTGCTCACCTTGACCAGACCCCTGCTGAAAAGCATTT-CAC  748

seq1  AATCTCCTTAAGGATGGGCAGGATGCCGCTGTGGTGCACACCCAGGCCAC  800
      | ||| |||||||||||||| |||||||||||| | ||   ||||| |||
seq2  ATTCT-CTTAAGGATGGGCA-GATGCCGCTGTGTTCCA---CCAGG-CAC  792

seq1  AGCGAAGGAGCTCCGAC-ATGTGCAGG-ACCTGCAGCTCGAGGAGGGAGG  848
      |||||| || ||||||| ||||||||| || ||||||| ||    |||||
seq2  AGCGAA-GAACTCCGACTATGTGCAGGAACTTGCAGCTTGA----GGAGG  837

seq1  AGA-GGGCAATGGTCAGA  865
      |||  ||||||| |||||
seq2  AGATAGGCAATGTTCAGA  855

seq1: chr17_35097765_35098218
seq2: B6Ng01-067D09.g_72_525 (reverse)

seq1  ACTTACTGTGTAGCCAAAGCTGATCTTAAACTCTTGCTCCTCTAGCCTTG  50
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATACTGTGTAGCCAAAGCTGATCTTAAACTCTTGCTCCTCTAGCATTG  50

seq1  ACTCCTAAGTGCTGGAATTCCAGACAAGCACTACAAACTACACACACAGG  100
      |||||||||  | |||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAAGAACAGGAATTCCAGACAAGCACTACAAACTACACACACAGG  100

seq1  TCTCTGAGTGTGAATTGGAGGAGGCAGTTTCTGGAGGGAGCCCTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTGTGAATTGGAGGAGGCAGTTTCTGGAGGGAGCCCTGCTTTT  150

seq1  AAATACAACTCCATTGGCCTGCCTCTCTCTCTCTCTCTCTCTCTCCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACTCCATTGGCCTGCCTCTCTCTCTCTCTCTCTCTCTCCCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATAAGTCCATATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATAAGTCCATATCAGA  300

seq1  ATATCTCTTCTGGGAATCCAAGGGCATTTAGTTGTCTGTGCTGTAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTTCTGGGAATCCAAGGGCATTTAGTTGTCTGTGCTGTAGTTTG  350

seq1  CTGATCTCAGCCAGTGTTTGGAAGATGCTGCTTCATAGATCCTCTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCAGCCAGTGTTTGGAAGATGCTGCTTCATAGATCCTCTGTTTG  400

seq1  TGTGGGAAGAATTGGCCAGCAGCAACTTGTTCCATAGTTAGACCTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGAATTGGCCAGCAGCAACTTGTTCCATAGTTAGACCTGATGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454