BAC Information

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BAC

Clone NameB6Ng01-067L08
Chromosome17 (Build37)
Map Location 26,378,667 - 26,378,983
singlet/doubletsinglet
Overlap geneItfg3
Upstream gene0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, LOC100042643
Downstream geneLuc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067L08.bB6Ng01-067L08.g
ACCDH886508DH886509
length1,173209
definitionDH886508|Mus musculus domesticus DNA, BAC clone: B6Ng01-067L08, 5' end.DH886509|Mus musculus domesticus DNA, BAC clone: B6Ng01-067L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttacctcaaatcaccatgaaggaatgataagaagaccactgtc
ccaatcccttaaattgaggtgtatggtttcggtcattttataaataaata
atatgttgtcattttaggagatgatttacaaatgagatggaggaaacaaa
acttctatctttccttttctattctttatcctcctttcttagacaaaggg
tgggggctgagcaaaaggagggatatagaaatataaaaatttagacaact
aggtgtagataattgaatctattcttaaaccaaaaatattttataacaat
aatcgtacattggtacagaagtttgtatattgatacaaaaataaggttat
attttgttaaattggtagagaacgttgtatactgatacaagttcaaggtt
ttcaatagtataaacctttgtatattgatacaaatgtaagattttgttgc
aacatattatagatatgtttcaattcttagataggcattgcatctgtact
acttaaatatacaaggtttagttccagttctcttaatagctgctattaca
agctgtttaggatgattaaataatgcaagtcaataatcaatcaatcaaac
tcttaatcaggttgtatactagtctggattatgacaaaaatatacattct
gggctgtacaggttatctggagacagggagtgtttgcttgttcagatatg
ctatgaatagatggtcttcaaaagtgtcatagatctgcagattatggcag
ttaaaagttattccattaataaaagatcttatgattatgaggcagatctg
ctcctgacaatacccttatcacccttcaaaaatattgcatcagtaacctc
agtgtggagttgctttaattataggcagaagtgtcctatttcatctacag
acaaaatactgtttaaaagagcaaacagagcaggatagtcactgctaagc
tctgccattaaagggtaagctagtctttcatatttctgcttgactaaaat
ctgtcagatgttctgggtcaaggctgagataatgctccaaataataaaga
atactgggattgtctaagcagtcagctatctcgtccttttgtttatattt
ttgagctgggatccttgctttcctcattccaaatatatttgtctcagact
tctatgatgtgagcgcatattga
acggccagcctggtctacaaagtgagttccaggacagccagggctataca
gagaaaccctgtctcacaaaaaaaaaaaaaaaaaaaaaaaaacaacacca
acaacaaaaaaaaaacaacagaaagaaagaaagaaagaaagaaagaaaga
atgaagaggagaggaggagaggagaggagaagagaaagagagagagaaag
agagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26378667_26378983
seq2: B6Ng01-067L08.g_79_285 (reverse)

seq1  TCTTTCTTTCTTTCTCTCTCTCTTTCTTTAAAAGATTTACTTATTTCATT  50
      ||||||| ||||||||||||||||||| |              | || | 
seq2  TCTTTCTCTCTTTCTCTCTCTCTTTCTCT--------------TCTCCT-  35

seq1  TATATGTAAGTACACTGTTGCTCTCCTCAGACACCCCAGAAGAGGGCATC  100
                | | ||  | ||||||||                      
seq2  ---------CTCCTCTCCTCCTCTCCTC----------------------  54

seq1  AGATCCCATTACAGATGGTTGTGAGACACCATGTGGTTGCTGGGAATTGA  150
               | ||     || |           |  || ||     ||  
seq2  ---------TTCA-----TTCT-----------TTCTTTCT-----TT--  72

seq1  ACTCAGGACCTCTGGAATAGCAGTCAGTGAGCCATCTCGCCAGTCCTAGT  200
               || |       |  ||  |   |  |||         | ||
seq2  ---------CTTT-------CTTTCTTT---CTTTCT--------GTTGT  95

seq1  TCCATTTTCTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTGGTTTTTGGCT  250
      |   |||| || || ||  | || |||||||||||||||  |||||   |
seq2  T--TTTTTTTTGTTGTTGGTGTTGTTTTTTTTTTTTTTTTTTTTTT---T  140

seq1  TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  190

seq1  TGTAGACCAGGCTGGCC  317
      |||||||||||||||||
seq2  TGTAGACCAGGCTGGCC  207