BAC Information

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BAC

Clone NameB6Ng01-068G12
Chromosome11 (Build37)17 (Build37)
Map Location 29,093,818 - 29,094,32545,054,872 - 45,055,328
singlet/doubletsingletsinglet
Overlap geneSmek2
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik
Downstream geneLOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068G12.bB6Ng01-068G12.g
ACCDH887001DH887002
length494764
definitionDH887001|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G12, 5' end.DH887002|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,093,818 - 29,094,325)(45,054,872 - 45,055,328)
sequence
atttacttgccattcggagcacttttctaactcaatctttacttactctt
aatttgaacatatctcaaataaatctgaggatatcactgtcagttcatat
agtaccaaaaaaaaaaaaaaaaagaaaaaaagaaaataacacgatggggc
ttaagtagtatatcagtgaagggagctggactatggcagcaggtacaaag
tcttaaggtgggaatttacagagcactttaatccacggccgaggataaac
taaaatgacaaatcaccatggtaattgtattttgataactccgatctgtc
tatctcggtcttttgatggcaggtgttaatttctctaagtgctcattaaa
agaatacatagagcatgggatcaaacccacatcattgtgcatgctaggca
agcaatctaccactgacctacagatccagaccaagtatgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtacatatatgtatacactttttttatt
gaattcctgatatttctaagacttttgtcatgaagggatgctgaattttg
tcaaatgctttctcaacatctgacaaaaggttcatgtggcttttttttct
ttgagtttgtttttgtagtggattacattgatcaatttctgtatattaaa
ccatccctgcatccgtgggatgaaacctacttcatcttggtgaatgattg
ttttgatgtgttcttgcatttggtttgtgagagtcttattgagtattttt
gcatcaatattcataagggaaattggtctaaagttctctttcttttttgg
gtgtttatgtgctttaggtatcagagtaattgtggcttcgtagaaggaat
tgggtagagaaccttctgtttctattttgtggagtagtttgaggagtatt
ggaattaggtcttctttgaaggtctgatagaactctgcactaaacccatc
tggttctgggcttttttgggttgggagaatattaatgactgcatctattt
ctttaggggaaacggggcagtttagatcattaatctgatcctgatttaac
tttggtacctagtatctgtctagaaaattgtccatttcatccagattttc
caattttattaagtatagccttgtgtagtaggatctgatgatttttttat
ttcctcgggttctgttgtcatgtggccttttcatttctgattttgttaat
tagaatatttttgcctgtgccctctagctagccctggcaaagggtttatc
tatcttgttgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29093818_29094325
seq2: B6Ng01-068G12.b_45_544 (reverse)

seq1  AATAAAAAGAGTATGTGTGTGTATACATATATGTACACACACACACACAC  50
      |||||||| |        ||||||||||||||||||||||||||||||||
seq2  AATAAAAAAA--------GTGTATACATATATGTACACACACACACACAC  42

seq1  ACACACACACACACATACTTGGTCTGGATCTGTAGGTCAGTGGTAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATACTTGGTCTGGATCTGTAGGTCAGTGGTAGATTG  92

seq1  CTTGCCTAGCATGCACAATGATGTGGGTTTGATCCCATGCTCTATGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTAGCATGCACAATGATGTGGGTTTGATCCCATGCTCTATGTATT  142

seq1  CTTTTAATGAGCACTTAGAGAAATTAACACCTGCCATCAAAAGACCGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGAGCACTTAGAGAAATTAACACCTGCCATCAAAAGACCGAGA  192

seq1  TAGACAGATCGGAGTTATCAAAATACAATTACCATGGTGATTTGTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGATCGGAGTTATCAAAATACAATTACCATGGTGATTTGTCATTT  242

seq1  TAGTTTATCCTCGGCCGTGGATTAAAGTGCTCTGTAAATTCCCACCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATCCTCGGCCGTGGATTAAAGTGCTCTGTAAATTCCCACCTTAA  292

seq1  GACTTTGTACCTGCTGCCATAGTCCAGCTCCCTTCACTGATATACTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTACCTGCTGCCATAGTCCAGCTCCCTTCACTGATATACTACTT  342

seq1  AAGCCCCATCGTGTTATTTTCTTTTTTTCTTTTTTTTTTTTTTTTTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCATCGTGTTATTTTCTTTTTTTCTTTTTTTTTTTTTTTTTGGTA  392

seq1  CTATATGAACTGACAGTGATATCCTCAGATTTATTTGAGATATGTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGAACTGACAGTGATATCCTCAGATTTATTTGAGATATGTTCAAA  442

seq1  TTAAGAGTAAGTAAAGATTGAGTTAGAAAAGTGCTCCGAATGGCAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTAAGTAAAGATTGAGTTAGAAAAGTGCTCCGAATGGCAAGTAA  492

seq1  ATGAATTC  508
      ||||||||
seq2  ATGAATTC  500

seq1: chr17_45054872_45055328
seq2: B6Ng01-068G12.g_376_832 (reverse)

seq1  AAATCAACAAGATAGATAAACCCTTAGCCA-GACTCACTAGAGGGCACAG  49
      ||||||||||||||||||||||||| |||| | ||  |||||||||||||
seq2  AAATCAACAAGATAGATAAACCCTTTGCCAGGGCTAGCTAGAGGGCACAG  50

seq1  G-GAAAGCATCATAATTAACAAAATCAGAAATGAAAAGGAAGACATAACA  98
      |  |||  ||  |||||||||||||||||||||||||||   |||| |||
seq2  GCAAAAATATTCTAATTAACAAAATCAGAAATGAAAAGG-CCACATGACA  99

seq1  ACATATCTTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCT  148
      ||| | |  || |||||  |||| | ||||||||||| ||||| ||||||
seq2  ACAGAACCCGAGGAAAT-AAAAAAATCATCAGATCCTACTACACAAGGCT  148

seq1  ATACTCAACAAAACTGGAAAACATGGATGAAATGGACAAATTTCTAGACA  198
      ||||| || |||| |||||||  |||||||||||||||| ||||||||||
seq2  ATACTTAATAAAATTGGAAAATCTGGATGAAATGGACAATTTTCTAGACA  198

seq1  GATACCAGGTACCAAAGTTATATCAGGATCAAGTTAATGATCTAAACAGT  248
      ||||| |||||||||||||| ||||||||||  |||||||||||||| | 
seq2  GATACTAGGTACCAAAGTTAAATCAGGATCAGATTAATGATCTAAACTGC  248

seq1  CCCATTTCCCCTAAAGAAATAGAAGAAGTCATTAATAATCTCCCAACCAA  298
      ||| ||||||||||||||||||| | ||||||||||| |||||||||| |
seq2  CCCGTTTCCCCTAAAGAAATAGATGCAGTCATTAATATTCTCCCAACCCA  298

seq1  AAAAAGCCCAGGAACAGATGGGTTTAGTGTAGAGTTCTATCAGACCTTCA  348
      ||||||||||| | ||||||||||||||| ||||||||||||||||||||
seq2  AAAAAGCCCAGAACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCA  348

seq1  AAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAACA  398
      ||||||| ||||||||| | || | ||||||| |||||||||||||||||
seq2  AAGAAGACCTAATTCCAATACTCCTCAAACTACTCCACAAAATAGAAACA  398

seq1  GAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACC  448
      |||||| |||||||||| || ||||| |||||||||||||||||||||||
seq2  GAAGGTTCTCTACCCAATTCCTTCTACGAAGCCACAATTACTCTGATACC  448

seq1  TAAACCACA  457
      |||| ||||
seq2  TAAAGCACA  457