BAC Information

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BAC

Clone NameB6Ng01-068H09
Chromosome17 (Build37)
Map Location 45,735,623 - 45,892,159
singlet/doubletdoublet
Overlap geneEG653016, Capn11, Tmem63b, Mrpl14
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1
Downstream geneLOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H09.bB6Ng01-068H09.g
ACCDH887041DH887042
length815698
definitionDH887041|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H09, 5' end.DH887042|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,735,623 - 45,736,435)(45,891,462 - 45,892,159)
sequence
gaattctctaggcagaccagactggcctgtagctcacacagatctgcgtg
cctctgctttaggagggctaaaatcaaagcctgtgccaccagcctggcct
gtgccactaacctggcctggcccacttgttttgtagcatagaatttctaa
ccatttgtcctctcccttgccttcccagtgctgggattataagtggcatc
atagctttgggaaaaatatgtatatatgtacatacatacatatacaaaat
atgtatacatacatacatacatacataggctctgagagaattgaaccaat
tgagtgagtcttccctgtgcccagtatcaaattttcaaataaagaccgat
gtgtacacagggtggatactaggtcagggtccaagaagaattgactttgt
tcattttgtctaaatctggcttctagccaaatttctctgatgactctcct
aacccgctggttggcagataagtctcctagtctcctctgacccaggagac
aattttaagtggcccagagtttaaacaaccatccaactgtacaaactcca
aaataaataaataaataaataaatattacatatatatccatccttcctca
cgaggtgacagatttgtactccaggagccaaatcctccttttcaaagggc
cagttggacaccatcagaaccgttcggtctccatggccgccccattgcac
ctgctgagactggacctggggtgggggtggggaggctggacagggggaga
atgaaaattcccaggtcgtggggaccccatccatctcccgacctcctcac
ctgggggggtggggg
gaattcctcttgcctggcacaatccatcgcagacagaaggaaaacagaaa
ggaactcttcaaattgtactggtaccatacttaacaatgcctctgtttct
cctgtccctaaaacccctcacactctctcctggaacctgagacctcaaca
gacagagttatgcaaaggacagcaggaaactgtctttagtatgctgggag
tggggccctgctaccccaaggcccctctgtacccactggggttacagcta
acatgacagcctgagtagtgctcagagctcccataaactgggtgcacaag
accagacataaggggtctaggaaagtctttaggactggcccctccaccca
taacacaagggagccctctattcactgtgatatactcccccagggagacg
atgggagaaccgcccaggctccccagcctgcgggtgcatcagcccctggt
cttcagcaaggcgtggagagggatcagcacacatcacatcacgcttggca
tggcccccattggtgggcagcatgccactctgccagtgagccttctccct
gaagaacagtcggcagcaggggaggggctacgagggagatgagctcctgg
caagagcggagatgccccctgagcaactcaccctactgagaccctgcctg
gtcttagtgtagcgagaaccaggctgatgaacaggacgagagaaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45735623_45736435
seq2: B6Ng01-068H09.b_45_859

seq1  GAATTCTCTAGGCAGACCAGACTGGCCTGTAGCTCACACAGATCTGCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGCAGACCAGACTGGCCTGTAGCTCACACAGATCTGCGTG  50

seq1  CCTCTGCTTTAGGAGGGCTAAAATCAAAGCCTGTGCCACCAGCCTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTAGGAGGGCTAAAATCAAAGCCTGTGCCACCAGCCTGGCCT  100

seq1  GTGCCACTAACCTGGCCTGGCCCACTTGTTTTGTAGCATAGAATTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTAACCTGGCCTGGCCCACTTGTTTTGTAGCATAGAATTTCTAA  150

seq1  CCATTTGTCCTCTCCCTTGCCTTCCCAGTGCTGGGATTATAAGTGGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCCTCTCCCTTGCCTTCCCAGTGCTGGGATTATAAGTGGCATC  200

seq1  ATAGCTTTGGGAAAAATATGTATATATGTACATACATACATATACAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTGGGAAAAATATGTATATATGTACATACATACATATACAAAAT  250

seq1  ATGTATACATACATACATACATACATAGGCTCTGAGAGAATTGAACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACATACATACATACATACATAGGCTCTGAGAGAATTGAACCAAT  300

seq1  TGAGTGAGTCTTCCCTGTGCCCAGTATCAAATTTTCAAATAAAGACCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTCTTCCCTGTGCCCAGTATCAAATTTTCAAATAAAGACCGAT  350

seq1  GTGTACACAGGGTGGATACTAGGTCAGGGTCCAAGAAGAATTGACTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACAGGGTGGATACTAGGTCAGGGTCCAAGAAGAATTGACTTTGT  400

seq1  TCATTTTGTCTAAATCTGGCTTCTAGCCAAATTTCTCTGATGACTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTCTAAATCTGGCTTCTAGCCAAATTTCTCTGATGACTCTCCT  450

seq1  AACCCGCTGGTTGGCAGATAAGTCTCCTAGTCTCCTCTGACCCAGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGCTGGTTGGCAGATAAGTCTCCTAGTCTCCTCTGACCCAGGAGAC  500

seq1  AATTTTAAGTGGCCCAGAGTTTAAACAACCATCCAACTGTACAAACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGTGGCCCAGAGTTTAAACAACCATCCAACTGTACAAACTCCA  550

seq1  AAATAAATAAATAAATAAATAAATATTACATATATATCCATCCTTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATATTACATATATATCCATCCTTCCTCA  600

seq1  CGAGGTGACAGATTTGTACTCCAGGAGCCAAATCCTCCTTTTCAAAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGACAGATTTGTACTCCAGGAGCCAAATCCTCCTTTTCAAAGGGC  650

seq1  CAGTTGGACACCATCAGAACCGTTCGGTCTCCATGGCCGCCCCATTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGACACCATCAGAACCGTTCGGTCTCCATGGCCGCCCCATTGCAC  700

seq1  CTGCTGAGACTGGACCTGGGGTGGGGGTGGGGAGGCTGGACA-GGGGAGA  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGCTGAGACTGGACCTGGGGTGGGGGTGGGGAGGCTGGACAGGGGGAGA  750

seq1  ATGAAAATTCCCAGGTCGTGGGGACCCCATCCATCTCCCGACCTCCTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTCCCAGGTCGTGGGGACCCCATCCATCTCCCGACCTCCTCAC  800

seq1  CT-GGGGGGTGGGGG  813
      || ||||||||||||
seq2  CTGGGGGGGTGGGGG  815

seq1: chr17_45891462_45892159
seq2: B6Ng01-068H09.g_72_769 (reverse)

seq1  GCCTTTCTCTCGTCCTGTTCATCAGCCTGGTTCTCGCTACACTAAGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCTCGTCCTGTTCATCAGCCTGGTTCTCGCTACACTAAGACCA  50

seq1  GGCAGGGTCTCAGTAGGGTGAGTTGCTCAGGGGGCATCTCCGCTCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTCTCAGTAGGGTGAGTTGCTCAGGGGGCATCTCCGCTCTTGCC  100

seq1  AGGAGCTCATCTCCCTCGTAGCCCCTCCCCTGCTGCCGACTGTTCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCATCTCCCTCGTAGCCCCTCCCCTGCTGCCGACTGTTCTTCAG  150

seq1  GGAGAAGGCTCACTGGCAGAGTGGCATGCTGCCCACCAATGGGGGCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGCTCACTGGCAGAGTGGCATGCTGCCCACCAATGGGGGCCATG  200

seq1  CCAAGCGTGATGTGATGTGTGCTGATCCCTCTCCACGCCTTGCTGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGTGATGTGATGTGTGCTGATCCCTCTCCACGCCTTGCTGAAGAC  250

seq1  CAGGGGCTGATGCACCCGCAGGCTGGGGAGCCTGGGCGGTTCTCCCATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTGATGCACCCGCAGGCTGGGGAGCCTGGGCGGTTCTCCCATCG  300

seq1  TCTCCCTGGGGGAGTATATCACAGTGAATAGAGGGCTCCCTTGTGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGGGGAGTATATCACAGTGAATAGAGGGCTCCCTTGTGTTATG  350

seq1  GGTGGAGGGGCCAGTCCTAAAGACTTTCCTAGACCCCTTATGTCTGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGGGCCAGTCCTAAAGACTTTCCTAGACCCCTTATGTCTGGTCT  400

seq1  TGTGCACCCAGTTTATGGGAGCTCTGAGCACTACTCAGGCTGTCATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCCAGTTTATGGGAGCTCTGAGCACTACTCAGGCTGTCATGTTA  450

seq1  GCTGTAACCCCAGTGGGTACAGAGGGGCCTTGGGGTAGCAGGGCCCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACCCCAGTGGGTACAGAGGGGCCTTGGGGTAGCAGGGCCCCACT  500

seq1  CCCAGCATACTAAAGACAGTTTCCTGCTGTCCTTTGCATAACTCTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATACTAAAGACAGTTTCCTGCTGTCCTTTGCATAACTCTGTCTG  550

seq1  TTGAGGTCTCAGGTTCCAGGAGAGAGTGTGAGGGGTTTTAGGGACAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCTCAGGTTCCAGGAGAGAGTGTGAGGGGTTTTAGGGACAGGAG  600

seq1  AAACAGAGGCATTGTTAAGTATGGTACCAGTACAATTTGAAGAGTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGCATTGTTAAGTATGGTACCAGTACAATTTGAAGAGTTCCTT  650

seq1  TCTGTTTTCCTTCTGTCTGCGATGGATTGTGCCAGGCAAGAGGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCTTCTGTCTGCGATGGATTGTGCCAGGCAAGAGGAATTC  698