BAC Information

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BAC

Clone NameB6Ng01-072A15
Chromosome17 (Build37)
Map Location 78,800,988 - 78,966,044
singlet/doubletdoublet
Overlap geneFez2, LOC100043888, Hdac1-ps, Vit
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1
Downstream geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072A15.bB6Ng01-072A15.g
ACCDH889570DH889571
length809922
definitionDH889570|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A15, 5' end.DH889571|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,800,988 - 78,801,796)(78,965,123 - 78,966,044)
sequence
gaattccactgtctaagccatctcgtctgaggaacgttttaggaatgcta
ggtaactgacacatatttctcctatcttatcctatatcaggactggattt
tggatttagtactccagcaatgctaagggcttatctacagagctgtggcc
aaatcacatcagaggaaaaaaatgtagcgtgtcagagaaccttccaaagg
ttacaaagaagccacaaaacacaaaggaattaagacagcccagcctcaga
cctctggtcaaaccacagtacaatcccagatcataacgggatcccaccca
gcagggaggcaggcctggcaataatcacaatgcatcagctgccaggctca
gagccaccccgtgctgggtatggctattcagaacctcttcgtgacagcca
accacatggtagttacagtccagtgctgtcatatacaaacacagatccaa
gtctaagaaaatctcacttcccaaatttcttcaaagctacatcaaagaca
actgtttgtaaacttaggaattcttttcagtaaacacattactatcttgc
tttttatgagctaaataaactttctctcccccaaaaacgcatgctgaagt
cttaacccacagtcctgcaggatatcccagcatttggaatatttacagag
atgactaagtaaaaaggaggcacaaggctggtcctcgatccaacgtgacc
tgtgtcttacaggaagacgaagaagcgtgggtcactggtatgtacggaag
gaaggaaggctggagaaaggatgggcactcacaggccaggggtggggggt
ggggtgggg
gaattcactatgaagcctcacagtttccattccaaatgactgttcttgct
ggacagatgcttacagaactgtaaagttttgggatctggctaattttggt
acatgattttgctcttctatttgcattttttaaaaaaaaaattaatagaa
ctttagctgggcggtagtggcacatacctttaatcccagcacttgggagg
cagaggcaggcagatttctgagtttgaggccagcctggtctacaaagtga
attccaggacagccagggttatacagagaaaccctgtctcgaaaaaccaa
aaataaaataaaagaaaaaataaaaaaggtgggggataagtcagtcagtt
tttctaagagtgataggaaaggagacgcagggtcacacgtgacttctcgg
acaaatttgtaaatggaatgcaggaggctcagttagatttgtacactttt
gctggctaattgcagcaaccctgcaccagacgtaccccaaagcgctttga
tcactgggtgcggaataggtcatagccacccacctgtgaattgcggcgcc
acacacgctggagtaagacgcgtagacgccagtgccgtaaacatggtatt
tggggtcctggcagcccgctggacatttcaccatgaactcaggattgatg
atctttccagctttgacatcgcagttgatctgaggcacagctgggaacac
agaatgaggtcaaaattacccgtgctgtgtcagacacatatgaggtgacg
ctgccaggctctaagcgttcatttacttaatcttaaaagtctgaacctga
actggccccgtgtcccttcctttccatacaacgaggctaaagacgtagca
aggacattcctcagaccttaaggacgagggcatccatttgcgtctaacgc
gcttaaaggggggggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78800988_78801796
seq2: B6Ng01-072A15.b_45_853

seq1  GAATTCCACTGTCTAAGCCATCTCGTCTGAGGAACGTTTTAGGAATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTCTAAGCCATCTCGTCTGAGGAACGTTTTAGGAATGCTA  50

seq1  GGTAACTGACACATATTTCTCCTATCTTATCCTATATCAGGACTGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGACACATATTTCTCCTATCTTATCCTATATCAGGACTGGATTT  100

seq1  TGGATTTAGTACTCCAGCAATGCTAAGGGCTTATCTACAGAGCTGTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAGTACTCCAGCAATGCTAAGGGCTTATCTACAGAGCTGTGGCC  150

seq1  AAATCACATCAGAGGAAAAAAATGTAGCGTGTCAGAGAACCTTCCAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATCAGAGGAAAAAAATGTAGCGTGTCAGAGAACCTTCCAAAGG  200

seq1  TTACAAAGAAGCCACAAAACACAAAGGAATTAAGACAGCCCAGCCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGAAGCCACAAAACACAAAGGAATTAAGACAGCCCAGCCTCAGA  250

seq1  CCTCTGGTCAAACCACAGTACAATCCCAGATCATAACGGGATCCCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTCAAACCACAGTACAATCCCAGATCATAACGGGATCCCACCCA  300

seq1  GCAGGGAGGCAGGCCTGGCAATAATCACAATGCATCAGCTGCCAGGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGCAGGCCTGGCAATAATCACAATGCATCAGCTGCCAGGCTCA  350

seq1  GAGCCACCCCGTGCTGGGTATGGCTATTCAGAACCTCTTCGTGACAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCCCGTGCTGGGTATGGCTATTCAGAACCTCTTCGTGACAGCCA  400

seq1  ACCACATGGTAGTTACAGTCCAGTGCTGTCATATACAAACACAGATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTAGTTACAGTCCAGTGCTGTCATATACAAACACAGATCCAA  450

seq1  GTCTAAGAAAATCTCACTTCCCAAATTTCTTCAAAGCTACATCAAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGAAAATCTCACTTCCCAAATTTCTTCAAAGCTACATCAAAGACA  500

seq1  ACTGTTTGTAAACTTAGGAATTCTTTTCAGTAAACACATTACTATCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGTAAACTTAGGAATTCTTTTCAGTAAACACATTACTATCTTGC  550

seq1  TTTTTATGAGCTAAATAAACTTTCTCTCCCCCAAAAACGCATGCTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGAGCTAAATAAACTTTCTCTCCCCCAAAAACGCATGCTGAAGT  600

seq1  CTTAACCCACAGTCCTGCAGGATATCCCAGCATTTGGAATATTTACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCACAGTCCTGCAGGATATCCCAGCATTTGGAATATTTACAGAG  650

seq1  ATGACTAAGTAAAAAGGAGGCACAAGGCTGGTCCTCGATCCAACGTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGTAAAAAGGAGGCACAAGGCTGGTCCTCGATCCAACGTGACC  700

seq1  TGTGTCTTACAGGAAGACGAAGAAGCGTGGGTCACTGGTATGTACGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTACAGGAAGACGAAGAAGCGTGGGTCACTGGTATGTACGGAAG  750

seq1  GAAGGAAGGCTGGAGAAAGGATGGGCACTCACAGGCCAGGGGTGGGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGCTGGAGAAAGGATGGGCACTCACAGGCCAGGGGTGGGGGGT  800

seq1  GGGGTGGGG  809
      |||||||||
seq2  GGGGTGGGG  809

seq1: chr17_78965123_78966044
seq2: B6Ng01-072A15.g_70_991 (reverse)

seq1  CCCCCCACCCCCCCCTTTTAGCGCGTTAGACGC-AATGGATGCCCTCGTC  49
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CCCCCCACCCCCCCCTTTAAGCGCGTTAGACGCAAATGGATGCCCTCGTC  50

seq1  CTTAAGGTCTGAGGAATGTCCTTGCTACGTCTTTAGCCTCGTTGTATGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGTCTGAGGAATGTCCTTGCTACGTCTTTAGCCTCGTTGTATGGA  100

seq1  AAGGAAGGGACACGGGGCCAGTTCAGGTTCAGACTTTTAAGATTAAGTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGACACGGGGCCAGTTCAGGTTCAGACTTTTAAGATTAAGTAA  150

seq1  ATGAACGCTTAGAGCCTGGCAGCGTCACCTCATATGTGTCCTGACACAGC  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGAACGCTTAGAGCCTGGCAGCGTCACCTCATATGTGT-CTGACACAGC  199

seq1  ACGGGTAATTTTGACCTCATTCTGTGTTCCCAGCTGTGCCTCAGATCAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTAATTTTGACCTCATTCTGTGTTCCCAGCTGTGCCTCAGATCAAC  249

seq1  TGCGATGTCAAAGCTGGAAAGATCATCAATCCTGAGTTCATGGTGAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGTCAAAGCTGGAAAGATCATCAATCCTGAGTTCATGGTGAAATG  299

seq1  TCCAGCGGGCTGCCAGGACCCCAAATACCATGTTTACGGCACTGGCGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCGGGCTGCCAGGACCCCAAATACCATGTTTACGGCACTGGCGTCT  349

seq1  ACGCGTCTTACTCCAGCGTGTGTGGCGCCGCAATTCACAGGTGGGTGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGTCTTACTCCAGCGTGTGTGGCGCCGCAATTCACAGGTGGGTGGCT  399

seq1  ATGACCTATTCCGCACCCAGTGATCAAAGCGCTTTGGGGTACGTCTGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTATTCCGCACCCAGTGATCAAAGCGCTTTGGGGTACGTCTGGTG  449

seq1  CAGGGTTGCTGCAATTAGCCAGCAAAAGTGTACAAATCTAACTGAGCCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCTGCAATTAGCCAGCAAAAGTGTACAAATCTAACTGAGCCTC  499

seq1  CTGCATTCCATTTACAAATTTGTCCGAGAAGTCACGTGTGACCCTGCGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCATTTACAAATTTGTCCGAGAAGTCACGTGTGACCCTGCGTC  549

seq1  TCCTTTCCTATCACTCTTAGAAAAACTGACTGACTTATCCCCCACCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTATCACTCTTAGAAAAACTGACTGACTTATCCCCCACCTTTT  599

seq1  TTATTTTTTCTTTTATTTTATTTTTGGTTTTTCGAGACAGGGTTTCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTCTTTTATTTTATTTTTGGTTTTTCGAGACAGGGTTTCTCTG  649

seq1  TATAACCCTGGCTGTCCTGGAATTCACTTTGTAGACCAGGCTGGCCTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCTGGCTGTCCTGGAATTCACTTTGTAGACCAGGCTGGCCTCAA  699

seq1  ACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTAT  749

seq1  GTGCCACTACCGCCCAGCTAAAGTTCTATTAATTTTTTTTTTAAAAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTACCGCCCAGCTAAAGTTCTATTAATTTTTTTTTTAAAAAATG  799

seq1  CAAATAGAAGAGCAAAATCATGTACCAAAATTAGCCAGATCCCAAAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAAGAGCAAAATCATGTACCAAAATTAGCCAGATCCCAAAACTT  849

seq1  TACAGTTCTGTAAGCATCTGTCCAGCAAGAACAGTCATTTGGAATGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCTGTAAGCATCTGTCCAGCAAGAACAGTCATTTGGAATGGAAA  899

seq1  CTGTGAGGCTTCATAGTGAATTC  922
      |||||||||||||||||||||||
seq2  CTGTGAGGCTTCATAGTGAATTC  922