BAC Information

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BAC

Clone NameB6Ng01-073H11
Chromosome17 (Build37)
Map Location 16,511,451 - 16,610,881
singlet/doubletdoublet
Overlap geneLOC100041383
Upstream geneDll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H11.bB6Ng01-073H11.g
ACCDH890590DH890591
length1,0451,112
definitionDH890590|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H11, 5' end.DH890591|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,511,451 - 16,512,428)(16,609,765 - 16,610,881)
sequence
gaattcaccaacttgcttctaatatgcaatgtatactgctatacctggct
gtagtgaagattcctgtctcagtgggattccctaacttttacatggtaaa
cccacctattagctaggccattgtgtattcccttgtttgggtaagactgg
ctactgtcccaagtaaacactctgcagaccagccctgagctattctggct
ctgttctttgtaatgcctaattagtttcaatgtctctactagaagtaaat
ttgaatgttcctgaataggtagccttcttactgaattcctactgaattcc
aagtttgtcgacttcaaggattttctgggacattggaacactggcgaagg
cttagctatgtcagaattcaatcttaaaaggcacttataataaaataata
ctaaaagagagcacgtggatccatacaccagactaacgcagggatagggt
atgagtatacgggttatgagaacgccaaggttccaggaggtgagtttctc
tgaaactctttgcctcatgagtgcttccaggcttctcagcctgtcaagca
gactacactggagtgtgtgtagcaattcccaacccccacattttgtggct
cttggctccaaatcatcatatgtgagagcacaacctggtacaaccacagc
aaccaggaaaagtaaaagagacaatgggaggatgggccagatggagcttt
agagaggagggtagctggatataggtgctataaaggggaagatgggcaaa
acagtaggaaggggctttcttggggaggggagaagaaggcagtatgggag
ttgatggaaaaataaataacaataagggtatttgaaaagactatagggaa
tcattttattttatatttacttaaaattatatatgcacggatacatatat
gttcatatacatacatgcagatacatatacattcacatccacatatacat
agttgaatgaagtatgccacttgcgtgaaatgttctctaaaagagtgata
gactttgttacaaaatctcgactgtgcataagaatatcctttcaa
gaattctcactcacagtacaaacttataatggaatgctaccagtatttga
tcttatagtttttctagcaagggacacaattttgaaatctgaggagaaaa
atgagcattattaaagattccagacttgattaatatgaatttacaaggcc
ttttggcacatactgttgttaggtccaggacgtaggcaattaagagagga
caagtactctggtcttgaatgccagacatggagacttaagaaggaaacat
atgtgacataagcatacatacacaagacattcttcttgcatcatggctcc
caataacatctaagactaaatatacagattagtgggaggagtaggatgca
taatgaatggtatctttagtacatgctttaaagcaacttctgtgtctact
ttctggttttggactgaattcttcaattttcactaatgctgctattttca
acctttgctctttaccacctccatctagtaagaaggattaaatatatttg
cctttttttctccacactacagaatgctgtcagaaaagaatacatggtaa
atataaaatgaatgtgtagaaaacactattaactgcagccactgtgctgc
agatctgagactcattcatcttgcatatctgaaactacttgtcctttgtt
cctctgtgctcatatgaattttaagattgttttcttatctctgaaaaaaa
atgttattggaaatttgatagggattggcagagcttaacttaataggata
caattctccctccactatctagttattaaattttgaggttccctttccct
tctagaagagctcagggtttcacagggtagatgatggcatcacatctaat
ggagagtattggacagaggctgtgggcagatagatgccagcagattgatg
tagctgatagatcttctaagataacattttaccttattacctagtaagtg
attatgcatgtatagtcatttatgttttcctgtatggcagtgtataatga
tataataacatgggcaatccaaagtttaattttttccatatggaaactat
ggtattacttactggcgaaaaattcattaagtatttcaggccattttgaa
gcgatcattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16511451_16512428
seq2: B6Ng01-073H11.b_116_1085

seq1  GATTCCCTAACTTTTACATGGTAAACCCACCTATTAGCTAGGCCATTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTAACTTTTACATGGTAAACCCACCTATTAGCTAGGCCATTGTG  50

seq1  TATTCCCTTGTTTGGGTAAGACTGGCTACTGTCCCAAGTAAACACTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTTGTTTGGGTAAGACTGGCTACTGTCCCAAGTAAACACTCTGC  100

seq1  AGACCAGCCCTGAGCTATTCTGGCTCTGTTCTTTGTAATGCCTAATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCCCTGAGCTATTCTGGCTCTGTTCTTTGTAATGCCTAATTAGT  150

seq1  TTCAATGTCTCTACTAGAAGTAAATTTGAATGTTCCTGAATAGGTAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTCTCTACTAGAAGTAAATTTGAATGTTCCTGAATAGGTAGCCT  200

seq1  TCTTACTGAATTCCTACTGAATTCCAAGTTTGTCGACTTCAAGGATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGAATTCCTACTGAATTCCAAGTTTGTCGACTTCAAGGATTTTC  250

seq1  TGGGACATTGGAACACTGGCGAAGGCTTAGCTATGTCAGAATTCAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATTGGAACACTGGCGAAGGCTTAGCTATGTCAGAATTCAATCTT  300

seq1  AAAAGGCACTTATAATAAAATAATACTAAAAGAGAGCACGTGGATCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCACTTATAATAAAATAATACTAAAAGAGAGCACGTGGATCCATA  350

seq1  CACCAGACTAACGCAGGGATAGGGTATGAGTATACGGGTTATGAGAACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACTAACGCAGGGATAGGGTATGAGTATACGGGTTATGAGAACGC  400

seq1  CAAGGTTCCAGGAGGTGAGTTTCTCTGAAACTCTTTGCCTCATGAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCCAGGAGGTGAGTTTCTCTGAAACTCTTTGCCTCATGAGTGCT  450

seq1  TCCAGGCTTCTCAGCCTGTCAAGCAGACTACACTGGAGTGTGTGTAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTCTCAGCCTGTCAAGCAGACTACACTGGAGTGTGTGTAGCAA  500

seq1  TTCCCAACCCCCACATTTTGTGGCTCTTGGCTCCAAATCATCATATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACCCCCACATTTTGTGGCTCTTGGCTCCAAATCATCATATGTGA  550

seq1  GAGCACAACCTGGTACAACCACAGCAACCAGGAAAAGTAAAAGAGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAACCTGGTACAACCACAGCAACCAGGAAAAGTAAAAGAGACAAT  600

seq1  GGGAGGATGGGCCAGATGGAGCTTTAGAGAGGAGGGTAGCTGGATATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGATGGGCCAGATGGAGCTTTAGAGAGGAGGGTAGCTGGATATAGG  650

seq1  TGCTATAAAGGGGAAGATGGGCAAAACAGTAGGAAGGGGCTTTCTTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAAGGGGAAGATGGGCAAAACAGTAGGAAGGGGCTTTCTTGGGG  700

seq1  AGGGGAGAAGAAGGCAGTATGGGAGTTGATGGAAAAATAAATAACAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGAAGGCAGTATGGGAGTTGATGGAAAAATAAATAACAATAA  750

seq1  GGGTATTTGAAAAGACTATAGGGAATCATTTTATTTTATATTTACTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTGAAAAGACTATAGGGAATCATTTTATTTTATATTTACTTAAA  800

seq1  ATTATATATGCACGGATACATATATGTTCATATACATACATGCAAATACA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTATATATGCACGGATACATATATGTTCATATACATACATGCAGATACA  850

seq1  TATACATTCACATCCACATATACATAGTTGAAATGAAGTTATGCCACTTG  900
      |||||||||||||||||||||||||||||| ||||||| |||||||||| 
seq2  TATACATTCACATCCACATATACATAGTTG-AATGAAG-TATGCCACTT-  897

seq1  GGGTGATAATGTTCTCTGAAAGAGTGATAGACTATGTAACAAAAATCTCG  950
      | |||| |||||||||| ||||||||||||||| ||| || |||||||||
seq2  GCGTGA-AATGTTCTCTAAAAGAGTGATAGACTTTGTTAC-AAAATCTCG  945

seq1  GCACTGTGCATAAGAAATATCCTTTCAA  978
        |||||||||||| |||||||||||||
seq2  --ACTGTGCATAAG-AATATCCTTTCAA  970

seq1: chr17_16609765_16610881
seq2: B6Ng01-073H11.g_67_1178 (reverse)

seq1  AAAAATGAATGGCTTTAAAATGGCCCTGAAATACTGTATGAATATTTCGC  50
      ||||||| || |||| ||||||| |||||||||||  |||||| ||||||
seq2  AAAAATG-ATCGCTTCAAAATGG-CCTGAAATACTTAATGAATTTTTCGC  48

seq1  CAGTAAGTATTA-CATAGTTTCCATATGG-AAAAATATAACCTTGGATTG  98
      ||||||||| || |||||||||||||||| ||||||  ||| ||||||||
seq2  CAGTAAGTAATACCATAGTTTCCATATGGAAAAAATTAAACTTTGGATTG  98

seq1  CCCATGTTATATTATTCATTATAACAACTGCCATACAGGAAAACATAAAT  148
      ||||||||||  || ||||||||   ||||||||||||||||||||||||
seq2  CCCATGTTATTATA-TCATTATA--CACTGCCATACAGGAAAACATAAAT  145

seq1  GACTATACATGCATAAATCACTTACTAGGTAATAAGGTAAAATGTTATCT  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACTATACATGCAT-AATCACTTACTAGGTAATAAGGTAAAATGTTATCT  194

seq1  TAGAAGATCTATTCAGCTACATCAATCTGCTGGCATCTATCTGCCCACAG  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATCTA-TCAGCTACATCAATCTGCTGGCATCTATCTGCCCACAG  243

seq1  CCTCTGTCCAATACTCTCCATTAGATGTGATGCCATCATCTACCCTGTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCAATACTCTCCATTAGATGTGATGCCATCATCTACCCTGTGA  293

seq1  AACCCTGAGCTCTTCTAGAAGGGAAAGGGAACCTCAAAATTTAATAACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAGCTCTTCTAGAAGGGAAAGGGAACCTCAAAATTTAATAACTA  343

seq1  GATAGTGGAGGGAGAATTGTATCCTATTAAGTTAAGCTCTGCCAATCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGAGGGAGAATTGTATCCTATTAAGTTAAGCTCTGCCAATCCCT  393

seq1  ATCAAATTTCCAATAACATTTTTTTTCAGAGATAAGAAAACAATCTTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTCCAATAACATTTTTTTTCAGAGATAAGAAAACAATCTTAAA  443

seq1  ATTCATATGAGCACAGAGGAACAAAGGACAAGTAGTTTCAGATATGCAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATGAGCACAGAGGAACAAAGGACAAGTAGTTTCAGATATGCAAG  493

seq1  ATGAATGAGTCTCAGATCTGCAGCACAGTGGCTGCAGTTAATAGTGTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAGTCTCAGATCTGCAGCACAGTGGCTGCAGTTAATAGTGTTTT  543

seq1  CTACACATTCATTTTATATTTACCATGTATTCTTTTCTGACAGCATTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATTCATTTTATATTTACCATGTATTCTTTTCTGACAGCATTCTG  593

seq1  TAGTGTGGAGAAAAAAAGGCAAATATATTTAATCCTTCTTACTAGATGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGAGAAAAAAAGGCAAATATATTTAATCCTTCTTACTAGATGGA  643

seq1  GGTGGTAAAGAGCAAAGGTTGAAAATAGCAGCATTAGTGAAAATTGAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAAAGAGCAAAGGTTGAAAATAGCAGCATTAGTGAAAATTGAAGA  693

seq1  ATTCAGTCCAAAACCAGAAAGTAGACACAGAAGTTGCTTTAAAGCATGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCCAAAACCAGAAAGTAGACACAGAAGTTGCTTTAAAGCATGTA  743

seq1  CTAAAGATACCATTCATTATGCATCCTACTCCTCCCACTAATCTGTATAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATACCATTCATTATGCATCCTACTCCTCCCACTAATCTGTATAT  793

seq1  TTAGTCTTAGATGTTATTGGGAGCCATGATGCAAGAAGAATGTCTTGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTAGATGTTATTGGGAGCCATGATGCAAGAAGAATGTCTTGTGT  843

seq1  ATGTATGCTTATGTCACATATGTTTCCTTCTTAAGTCTCCATGTCTGGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTTATGTCACATATGTTTCCTTCTTAAGTCTCCATGTCTGGCA  893

seq1  TTCAAGACCAGAGTACTTGTCCTCTCTTAATTGCCTACGTCCTGGACCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCAGAGTACTTGTCCTCTCTTAATTGCCTACGTCCTGGACCTA  943

seq1  ACAACAGTATGTGCCAAAAGGCCTTGTAAATTCATATTAATCAAGTCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTATGTGCCAAAAGGCCTTGTAAATTCATATTAATCAAGTCTGG  993

seq1  AATCTTTAATAATGCTCATTTTTCTCCTCAGATTTCAAAATTGTGTCCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAATAATGCTCATTTTTCTCCTCAGATTTCAAAATTGTGTCCCT  1043

seq1  TGCTAGAAAAACTATAAGATCAAATACTGGTAGCATTCCATTATAAGTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAAAACTATAAGATCAAATACTGGTAGCATTCCATTATAAGTTT  1093

seq1  GTACTGTGAGTGAGAATTC  1117
      |||||||||||||||||||
seq2  GTACTGTGAGTGAGAATTC  1112