BAC Information

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BAC

Clone NameB6Ng01-073H18
Chromosome17 (Build37)
Map Location 73,525,797 - 73,660,870
singlet/doubletdoublet
Overlap geneLycat, LOC668709, Capn13
Upstream geneAlk, Ypel5, Lbh
Downstream geneLOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H18.bB6Ng01-073H18.g
ACCDH890603DH890604
length1,1751,061
definitionDH890603|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H18, 5' end.DH890604|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,525,797 - 73,526,980)(73,659,809 - 73,660,870)
sequence
gaattctccattagatggtggtcatgagtctggggagtaggtaccacaga
ggtgaagtgtgagtcttatatcagagagattcctgatggcaagtgctctg
tccttggtgatatttatctctatcacttgagtgatgtggtctggtgtcat
gttactatattcattatgctatattctctttattcaccagtaactatttt
atattcataagtaacagtccatgctcatcacatttattttatcatctggc
ttattgtagaatactgtcattattaccgaaattttttttagctttggata
gagaattcttactggctattgcttctgtcttttgctgcactcatcttgtt
tctttcacctgcttatgttctgatgctctaagactccgccctactccgtt
tctctcacaaggtctcactatacagatcaggctagcctcaaagtctaaga
gatccatttgcctcatgagtgctgtgattaaagatgtgtgccaccctgcc
tggctataattccttctctgtaggagctgggttgtttgcctttccccgaa
taaactagataaccacattccttggtttgtggctcctcttctattttcaa
agacaacagtgcctagttgagtcttatacccttttgttttgaaagtgagt
ccccttcccctgatcttttctacttttaagggctattatgattcttttca
gttcgctaaattaatctaggctgattttccaatcttaaatttagctgcat
agtaacctctgctgccctttgtgtgtaatataacgtatttagctgtgcac
gtattgtcatgtggctatgtttagcgatttgtcatggttctgcctcccag
acttgaattgctatcatagtctggctctgcaaagctagtcacatacttag
cttgagaattcaataaaggtgtatgtagatgataaagtatctagaaaatt
gatcatagcaaatttaaggatgaaaacctattggcctgtgtagaatagaa
cccctaaatgatagcaaatgagagcttcattgccaacaaatgccatcagt
gaatgtttccctttcataatcaggcaaggcgttatagggtgtggccagaa
gtaggatacttttctagacaatcactgtagacatagggggagtgcctggt
ggaacatttttgggcctattccttc
gaattctattcaaatcctttctgcattttgaaactggggtatattttagt
atctttttgttactgagctgtgagagttattttcttattttcattactaa
ccctttatcatgttatttgtcaattttctcctgctgtttagcttgtcttt
tcattttcttaaaaatattttatttttcaattagaacagttttcatataa
tatgctttatcatattttcccctcgatcccccgactcctcccagagcctt
cccactttgtgtttttacgagggtattgttttgtttttgtcttgacgatc
tgggaggtatcatttgacttcgtgagcgtctaagtttgatgaggcctacc
atgtctacttttctttagttatttatacttttgctggtagggctccaggt
ccactgtctagccttgggccacaaatgtttacttctacttcgcttgtcac
atatgtagcttttgtcatagacttctgaactatttttgagggtttctttg
ggttttttgttttgttttgttttgtttgcctgtgcaaagcaggagtctag
tttcattcttttacatgtggacacctggtcttctgtgcactcatttaaag
ctataaatcgtatctgaatgtagttttattttctatttcccaaactatat
ccacttatcactttggaattttgtcttgatttggtttgatttggaggttt
ggatttttttccccttcctcactgatcctagataggactactactacaat
tctgaaccgatatttaaaaagcagacagaaggacagatgttcttatgttc
ctcaaagatgacaagtctttcactgtcccatctgacgttaaacgtgaagg
tttctacttttaggagctgggagtgcagaattttaatgttacaacaacga
ctgttactcttgtcctattttacaagtgagaaagtttgcttcaggttgca
ggctggttaatcatgaggctgaggtttaaaaactaggtctgtgaatttca
tattttcctctgggcctttccagccatgaggcacagaaggtgggattacc
tctgtgtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73525797_73526980
seq2: B6Ng01-073H18.b_44_1218

seq1  GAATTCTCCATTAGATGGTGGTCATGAGTCTGGGGAGTAGGTACCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTAGATGGTGGTCATGAGTCTGGGGAGTAGGTACCACAGA  50

seq1  GGTGAAGTGTGAGTCTTATATCAGAGAGATTCCTGATGGCAAGTGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGTGTGAGTCTTATATCAGAGAGATTCCTGATGGCAAGTGCTCTG  100

seq1  TCCTTGGTGATATTTATCTCTATCACTTGAGTGATGTGGTCTGGTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTGATATTTATCTCTATCACTTGAGTGATGTGGTCTGGTGTCAT  150

seq1  GTTACTATATTCATTATGCTATATTCTCTTTATTCACCAGTAACTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATATTCATTATGCTATATTCTCTTTATTCACCAGTAACTATTTT  200

seq1  ATATTCATAAGTAACAGTCCATGCTCATCACATTTATTTTATCATCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATAAGTAACAGTCCATGCTCATCACATTTATTTTATCATCTGGC  250

seq1  TTATTGTAGAATACTGTCATTATTACCGAAATTTTTTTTAGCTTTGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAGAATACTGTCATTATTACCGAAATTTTTTTTAGCTTTGGATA  300

seq1  GAGAATTCTTACTGGCTATTGCTTCTGTCTTTTGCTGCACTCATCTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTTACTGGCTATTGCTTCTGTCTTTTGCTGCACTCATCTTGTT  350

seq1  TCTTTCACCTGCTTATGTTCTGATGCTCTAAGACTCCGCCCTACTCCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCTGCTTATGTTCTGATGCTCTAAGACTCCGCCCTACTCCGTT  400

seq1  TCTCTCACAAGGTCTCACTATACAGATCAGGCTAGCCTCAAAGTCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAAGGTCTCACTATACAGATCAGGCTAGCCTCAAAGTCTAAGA  450

seq1  GATCCATTTGCCTCATGAGTGCTGTGATTAAAGATGTGTGCCACCCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTTGCCTCATGAGTGCTGTGATTAAAGATGTGTGCCACCCTGCC  500

seq1  TGGCTATAATTCCTTCTCTGTAGGAGCTGGGTTGTTTGCCTTTCCCCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATAATTCCTTCTCTGTAGGAGCTGGGTTGTTTGCCTTTCCCCGAA  550

seq1  TAAACTAGATAACCACATTCCTTGGTTTGTGGCTCCTCTTCTATTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGATAACCACATTCCTTGGTTTGTGGCTCCTCTTCTATTTTCAA  600

seq1  AGACAACAGTGCCTAGTTGAGTCTTATACCCTTTTGTTTTGAAAGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGTGCCTAGTTGAGTCTTATACCCTTTTGTTTTGAAAGTGAGT  650

seq1  CCCCTTCCCCTGATCTTTTCTACTTTTAAGGGCTATTATGATTC-TTTCA  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCCTTCCCCTGATCTTTTCTACTTTTAAGGGCTATTATGATTCTTTTCA  700

seq1  GTTCGCTAAATTAATCTAGGCTGATTTTCCAATCTTAAATTTAGCTGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCTAAATTAATCTAGGCTGATTTTCCAATCTTAAATTTAGCTGCAT  750

seq1  AGTAACCTCTGCTGCCCTTTGTGTGTAATATAACGTATTTAGCTGTGCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCTCTGCTGCCCTTTGTGTGTAATATAACGTATTTAGCTGTGCAC  800

seq1  GTATTGTCATGTGGCTATGTTTAGCGATTTGTCATGGTTCTGCCTCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTCATGTGGCTATGTTTAGCGATTTGTCATGGTTCTGCCTCCCAG  850

seq1  ACTTGAATTGCTATCATAGTCTGGCTCTGCAAAGCTAGTCACATACTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATTGCTATCATAGTCTGGCTCTGCAAAGCTAGTCACATACTTAG  900

seq1  CTTGAGAATTCAATAAAGGTGTATGTAGATGATAAAGTATCTAGAAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAATTCAATAAAGGTGTATGTAGATGATAAAGTATCTAGAAAATT  950

seq1  GATCAATAGCAAATTTAAAGGATGAAAAACCTATTGGCCTGTGTTAGAAT  999
      |||| ||||||||||| ||||||| |||||||||||||||||| ||||||
seq2  GATC-ATAGCAAATTT-AAGGATG-AAAACCTATTGGCCTGTG-TAGAAT  996

seq1  AGAACCCCTAAATGATAGCAAATGAGAAGCCTCATTTTGCCAACAAATGC  1049
      |||||||||||||||||||||||||| ||| |||  ||||||||||||||
seq2  AGAACCCCTAAATGATAGCAAATGAG-AGCTTCA--TTGCCAACAAATGC  1043

seq1  CATCAGTGAATGTTTCCCTTTTCAATATCAGGCAAGCGTTTATAGTGTGT  1099
      |||||||||||||||||| |||||  ||||||||||   |||||| ||||
seq2  CATCAGTGAATGTTTCCC-TTTCATAATCAGGCAAGGCGTTATAGGGTGT  1092

seq1  GCCAGGAGGTAGGAT-CATTTCTAGACAATCACTGTAGACTATAGTGGGA  1148
      | |  || ||||||| | |||||||||||||||||||||| |||| ||||
seq2  GGCCAGAAGTAGGATACTTTTCTAGACAATCACTGTAGAC-ATAGGGGGA  1141

seq1  TGTG-CTGTGTGTACATTTTTGGGCTTGTTTTCCTTC  1184
       ||| |||   | ||||||||||||   | |||||||
seq2  -GTGCCTGGTGGAACATTTTTGGGC--CTATTCCTTC  1175

seq1: chr17_73659809_73660870
seq2: B6Ng01-073H18.g_68_1128 (reverse)

seq1  TCAAACACAG-CGTAATCCAACC-TCTGTGCCTCATGGCTGGAAAAGCAC  48
      ||||||||||  ||||||| ||| ||||||||||||||||||||| || |
seq2  TCAAACACAGAGGTAATCCCACCTTCTGTGCCTCATGGCTGGAAAGGC-C  49

seq1  CAGAGAAAAATATGGAAATCACAGACCTAGTTTTTAAACCTCAGCCTCAT  98
      ||||| |||||||| || ||||||||||||||||||||||||||||||||
seq2  CAGAGGAAAATATGAAATTCACAGACCTAGTTTTTAAACCTCAGCCTCAT  99

seq1  GATTAACCAGCCTTGCAACCTG-AGC-AACTTTCTCACTTGTAAAATTAG  146
      |||||||||||| ||||||||| ||| ||||||||||||||||||| |||
seq2  GATTAACCAGCC-TGCAACCTGAAGCAAACTTTCTCACTTGTAAAA-TAG  147

seq1  GACAAGAGTAAACAGTCGTTGTTGTAACATTAAAAATACTGCACTCCCAG  196
      ||||||||| ||||||||||||||||||||| ||||| ||||||||||||
seq2  GACAAGAGT-AACAGTCGTTGTTGTAACATT-AAAATTCTGCACTCCCAG  195

seq1  CTCCTAAAAGTAGAAACCTTCACGTTTAACGTCAGATGGGACAGTGAAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAAGTAGAAACCTTCACGTTTAACGTCAGATGGGACAGTGAAAG  245

seq1  ACTTGTCATCTTTGAGGAACATAAGAACATCTGTCCTTCTGTCTGCTTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCATCTTTGAGGAACATAAGAACATCTGTCCTTCTGTCTGCTTTT  295

seq1  TAAATATCGGTTCAGAATTGTAGTAGTAGTCCTATCTAGGATCAGTGAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCGGTTCAGAATTGTAGTAGTAGTCCTATCTAGGATCAGTGAGG  345

seq1  AAGGGGAAAAAAATCCAAACCTCCAAATCAAACCAAATCAAGACAAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAAAAATCCAAACCTCCAAATCAAACCAAATCAAGACAAAATT  395

seq1  CCAAAGTGATAAGTGGATATAGTTTGGGAAATAGAAAATAAAACTACATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGATAAGTGGATATAGTTTGGGAAATAGAAAATAAAACTACATT  445

seq1  CAGATACGATTTATAGCTTTAAATGAGTGCACAGAAGACCAGGTGTCCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACGATTTATAGCTTTAAATGAGTGCACAGAAGACCAGGTGTCCAC  495

seq1  ATGTAAAAGAATGAAACTAGACTCCTGCTTTGCACAGGCAAACAAAACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAGAATGAAACTAGACTCCTGCTTTGCACAGGCAAACAAAACAA  545

seq1  AACAAAACAAAAAACCCAAAGAAACCCTCAAAAATAGTTCAGAAGTCTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAACCCAAAGAAACCCTCAAAAATAGTTCAGAAGTCTAT  595

seq1  GACAAAAGCTACATATGTGACAAGCGAAGTAGAAGTAAACATTTGTGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGCTACATATGTGACAAGCGAAGTAGAAGTAAACATTTGTGGCC  645

seq1  CAAGGCTAGACAGTGGACCTGGAGCCCTACCAGCAAAAGTATAAATAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAGACAGTGGACCTGGAGCCCTACCAGCAAAAGTATAAATAACT  695

seq1  AAAGAAAAGTAGACATGGTAGGCCTCATCAAACTTAGACGCTCACGAAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGTAGACATGGTAGGCCTCATCAAACTTAGACGCTCACGAAGT  745

seq1  CAAATGATACCTCCCAGATCGTCAAGACAAAAACAAAACAATACCCTCGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATACCTCCCAGATCGTCAAGACAAAAACAAAACAATACCCTCGT  795

seq1  AAAAACACAAAGTGGGAAGGCTCTGGGAGGAGTCGGGGGATCGAGGGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAAAGTGGGAAGGCTCTGGGAGGAGTCGGGGGATCGAGGGGAA  845

seq1  AATATGATAAAGCATATTATATGAAAACTGTTCTAATTGAAAAATAAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATAAAGCATATTATATGAAAACTGTTCTAATTGAAAAATAAAAT  895

seq1  ATTTTTAAGAAAATGAAAAGACAAGCTAAACAGCAGGAGAAAATTGACAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGAAAATGAAAAGACAAGCTAAACAGCAGGAGAAAATTGACAA  945

seq1  ATAACATGATAAAGGGTTAGTAATGAAAATAAGAAAATAACTCTCACAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGATAAAGGGTTAGTAATGAAAATAAGAAAATAACTCTCACAGC  995

seq1  TCAGTAACAAAAAGATACTAAAATATACCCCAGTTTCAAAATGCAGAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACAAAAAGATACTAAAATATACCCCAGTTTCAAAATGCAGAAAG  1045

seq1  GATTTGAATAGAATTC  1062
      ||||||||||||||||
seq2  GATTTGAATAGAATTC  1061