BAC Information

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BAC

Clone NameB6Ng01-073J14
Chromosome17 (Build37)
Map Location 71,540,401 - 71,688,554
singlet/doubletdoublet
Overlap geneLpin2, Emilin2, LOC100043644
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1
Downstream geneSmchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073J14.bB6Ng01-073J14.g
ACCDH890674DH890675
length972893
definitionDH890674|Mus musculus domesticus DNA, BAC clone: B6Ng01-073J14, 5' end.DH890675|Mus musculus domesticus DNA, BAC clone: B6Ng01-073J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,540,401 - 71,541,369)(71,687,662 - 71,688,554)
sequence
gaattctagttcatgttaataaaaattgtgaagcatttgaaataatctta
ttctgtgtattggaaaatcctgtgtgagagttttaattgtcaaattggta
cagcctaggagttagcctggggaggaggggttgtgcgccttggtttggcc
tgtgggcctggctgtggggatcatctgggttcctttacctgatgtgggaa
ggcacaacctgaaagtggactttgaggtttcctggtgtggagctgtggac
tgtgcaaaagtgataaatttgcctagggtaacttcacagtgtaactagta
tttatctaatatttaatactcagctagtataagcagttttcactgcttat
gtcttcataggtagatagtgtgcagaattacacatgtgcggtgattttac
ttttcctatacattttgttttctttgtagtgaacagtggtgtgctgactt
tgcgtgactccaggctcacattgcctgactgtcagtggggtctgcgtcct
gttctgagtatctgagtctctctcccgttgggtcccttgtcctcattctt
tactcaatttcctgcttatctggaattgttacctttgcggcatttactgg
ggttttttttctttatttgtggttctttctctcctcctccatctcttaaa
tcttcatctttctaacttttgccttctcttactgaattgccttttctcac
ctgggaaataccggcctcactcctggccttgtttttgtccctcacacctg
agaaggaaggtgtgttaccagagtctgcatgccagagggcgcgagagcac
cagagactcatcggggcctctgttcttgtgaagttgaggagtgggttggc
tggcgctgggctctggttcctttgaatgggaaatgtttctgcctgtttgc
tgtggtcttgtctgttggggatttcataggctctggcattttgctgtttg
gattgtcattggggaacccttc
gaattcatggggctgagcaaatggttcagtggttggagatgcaatcccac
tgagcctttcataagcacctgtaactccagctccaggggaagcaacgatc
tctctggcctcctcagcacccacacatgtgagcgcatgtatacatgcata
catacatacatacatacaacacacatacctaagtaaaaaaaaaaattaaa
ttttatgtctgtggggttttgcctacctgtctatctgttaccgtgtgcgc
acactgcctgtggagggtgttggatccccaggaactgaagttacaggtgg
ttgtgaactgccatgtgggtgctgggaatcgaacctgcattctctggaag
agcagctagtgctcttaattgctgagtcatctctacagcccccaaataaa
ttttgtcttggttttttttttgtttttgtttttaaaaaaaccacagggtt
tcctctctgtatccctggctgtcctagaacctccttgtaccaggttcgct
tgacagtgtggaggctcccgttcacatgcccaccaggaagggtgtggggg
ctccagcggctgcctcttatattcaagaactctgtagaccaggctaacct
tgaccttacagagattctcctgcctctgcctcccaagtgctgggattaaa
ggtgtgtgctgccatgcctggcccccaaataaatattttttaaagaaatc
tatagcatttttattcatatatgctatctgtaaattgtataaatttagct
tgttagttagaaaaacttgcttttttttttttttccatgttgaggattgc
acctagctagagtctctcacatgcttgttgccttgccataaaactactaa
ctactttacccaaaagtgtgtgtgtgtttgtgtgtgtgttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71540401_71541369
seq2: B6Ng01-073J14.b_45_1016

seq1  GAATTCTAGTTCATGTTAATAAAAATTGTGAAGCATTTGAAATAATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTCATGTTAATAAAAATTGTGAAGCATTTGAAATAATCTTA  50

seq1  TTCTGTGTATTGGAAAATCCTGTGTGAGAGTTTTAATTGTCAAATTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTATTGGAAAATCCTGTGTGAGAGTTTTAATTGTCAAATTGGTA  100

seq1  CAGCCTAGGAGTTAGCCTGGGGAGGAGGGGTTGTGCGCCTTGGTTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGAGTTAGCCTGGGGAGGAGGGGTTGTGCGCCTTGGTTTGGCC  150

seq1  TGTGGGCCTGGCTGTGGGGATCATCTGGGTTCCTTTACCTGATGTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCTGGCTGTGGGGATCATCTGGGTTCCTTTACCTGATGTGGGAA  200

seq1  GGCACAACCTGAAAGTGGACTTTGAGGTTTCCTGGTGTGGAGCTGTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAACCTGAAAGTGGACTTTGAGGTTTCCTGGTGTGGAGCTGTGGAC  250

seq1  TGTGCAAAAGTGATAAATTTGCCTAGGGTAACTTCACAGTGTAACTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAAGTGATAAATTTGCCTAGGGTAACTTCACAGTGTAACTAGTA  300

seq1  TTTATCTAATATTTAATACTCAGCTAGTATAAGCAGTTTTCACTGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAATATTTAATACTCAGCTAGTATAAGCAGTTTTCACTGCTTAT  350

seq1  GTCTTCATAGGTAGATAGTGTGCAGAATTACACATGTGCGGTGATTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATAGGTAGATAGTGTGCAGAATTACACATGTGCGGTGATTTTAC  400

seq1  TTTTCCTATACATTTTGTTTTCTTTGTAGTGAACAGTGGTGTGCTGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATACATTTTGTTTTCTTTGTAGTGAACAGTGGTGTGCTGACTT  450

seq1  TGCGTGACTCCAGGCTCACATTGCCTGACTGTCAGTGGGGTCTGCGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGACTCCAGGCTCACATTGCCTGACTGTCAGTGGGGTCTGCGTCCT  500

seq1  GTTCTGAGTATCTGAGTCTCTCTCCCGTTGGGTCCCTTGTCCTCATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGTATCTGAGTCTCTCTCCCGTTGGGTCCCTTGTCCTCATTCTT  550

seq1  TACTCAATTTCCTGCTTATCTGGAATTGTTACCTTTGCGGCATTTACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATTTCCTGCTTATCTGGAATTGTTACCTTTGCGGCATTTACTGG  600

seq1  GGTTTTTTTTCTTTATTTGTGGTTCTTTCTCTCCTCCTCCATCTCTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTCTTTATTTGTGGTTCTTTCTCTCCTCCTCCATCTCTTAAA  650

seq1  TCTTCATC-TTCTAAC-TTTGCCTTCTCTTACTGAAGTGCC-TTTCTCAC  697
      |||||||| ||||||| ||||||||||||||||||| |||| ||||||||
seq2  TCTTCATCTTTCTAACTTTTGCCTTCTCTTACTGAATTGCCTTTTCTCAC  700

seq1  CTGGGAAATACCGGCCTCACTCCTGGCCTTG-TTTTGTCCCTCACACCTG  746
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGGAAATACCGGCCTCACTCCTGGCCTTGTTTTTGTCCCTCACACCTG  750

seq1  AGAAGGAAGGTGTGTTACCAGAGTCTGCAGGCCAGAGGGCGCGAGAGCAC  796
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAGGAAGGTGTGTTACCAGAGTCTGCATGCCAGAGGGCGCGAGAGCAC  800

seq1  CAGAGACTCATCGGGGCCTCTGTTCTTGTGAAGTTGAGGAGGTGGCTGGC  846
      |||||||||||||||||||||||||||||||||||||||||  || ||||
seq2  CAGAGACTCATCGGGGCCTCTGTTCTTGTGAAGTTGAGGAGTGGGTTGGC  850

seq1  TGGCGCTGGGCTCT-GTTCCTCTGAGTGGG-AATGTTTCTGTCTTGCTTG  894
      |||||||||||||| |||||| ||| |||| |||||||||| | || |||
seq2  TGGCGCTGGGCTCTGGTTCCTTTGAATGGGAAATGTTTCTG-CCTGTTTG  899

seq1  CTGTGGTCCTGTCTGTAGGGGATTCCAGAGGCTCTTGGCATTTTGTCTGT  944
      |||||||| ||||||| ||||||| || |||||| |||||||||| ||||
seq2  CTGTGGTCTTGTCTGTTGGGGATTTCATAGGCTC-TGGCATTTTG-CTGT  947

seq1  TAGGATTGTCATTGGTGGACCCTTC  969
      | ||||||||||||| | |||||||
seq2  TTGGATTGTCATTGGGGAACCCTTC  972

seq1: chr17_71687662_71688554
seq2: B6Ng01-073J14.g_69_961 (reverse)

seq1  CACACACACACACACACACACACACACACTTTTGGGTAATGTAGTTTAGT  50
      |||| ||||||||||| |||||||||||||||||||||| |||| |||||
seq2  CACA-ACACACACACAAACACACACACACTTTTGGGTAAAGTAG-TTAGT  48

seq1  AGTTTAATGGCAAGGC-ACAAGCATGTGAGAGACTCTAGCTAGGTGCAAT  99
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTTTATGGCAAGGCAACAAGCATGTGAGAGACTCTAGCTAGGTGCAAT  98

seq1  CCTCAACATGG-AAAAAAAAAAAAAGCAAGTTTTTCTAACTAACAAGCTA  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACATGGAAAAAAAAAAAAAAGCAAGTTTTTCTAACTAACAAGCTA  148

seq1  ATTTTATACAATTTACAGATAGCATATATGAATAAAAATGCTATAGATTT  198
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATACAATTTACAGATAGCATATATGAATAAAAATGCTATAGATTT  198

seq1  CTTTAAAAAATATTTATTTGGGGGCCAGGCATGGCAGCACACACCTTTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAATATTTATTTGGGGGCCAGGCATGGCAGCACACACCTTTAA  248

seq1  TCCCAGCACTTGGGAGGCAGAGGCAGGAGAATCTCTGTAAGGTCAAGGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTTGGGAGGCAGAGGCAGGAGAATCTCTGTAAGGTCAAGGTT  298

seq1  AGCCTGGTCTACAGAGTTCTTGAATATAAGAGGCAGCCGCTGGAGCCCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTTCTTGAATATAAGAGGCAGCCGCTGGAGCCCCC  348

seq1  ACACCCTTCCTGGTGGGCATGTGAACGGGAGCCTCCACACTGTCAAGCGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTCCTGGTGGGCATGTGAACGGGAGCCTCCACACTGTCAAGCGA  398

seq1  ACCTGGTACAAGGAGGTTCTAGGACAGCCAGGGATACAGAGAGGAAACCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTACAAGGAGGTTCTAGGACAGCCAGGGATACAGAGAGGAAACCC  448

seq1  TGTGGTTTTTTTAAAAACAAAAACAAAAAAAAAACCAAGACAAAATTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTTTTAAAAACAAAAACAAAAAAAAAACCAAGACAAAATTTAT  498

seq1  TTGGGGGCTGTAGAGATGACTCAGCAATTAAGAGCACTAGCTGCTCTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCTGTAGAGATGACTCAGCAATTAAGAGCACTAGCTGCTCTTCC  548

seq1  AGAGAATGCAGGTTCGATTCCCAGCACCCACATGGCAGTTCACAACCACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGCAGGTTCGATTCCCAGCACCCACATGGCAGTTCACAACCACC  598

seq1  TGTAACTTCAGTTCCTGGGGATCCAACACCCTCCACAGGCAGTGTGCGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTCAGTTCCTGGGGATCCAACACCCTCCACAGGCAGTGTGCGCA  648

seq1  CACGGTAACAGATAGACAGGTAGGCAAAACCCCACAGACATAAAATTTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTAACAGATAGACAGGTAGGCAAAACCCCACAGACATAAAATTTAA  698

seq1  TTTTTTTTTTTACTTAGGTATGTGTGTTGTATGTATGTATGTATGTATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTACTTAGGTATGTGTGTTGTATGTATGTATGTATGTATGC  748

seq1  ATGTATACATGCGCTCACATGTGTGGGTGCTGAGGAGGCCAGAGAGATCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACATGCGCTCACATGTGTGGGTGCTGAGGAGGCCAGAGAGATCG  798

seq1  TTGCTTCCCCTGGAGCTGGAGTTACAGGTGCTTATGAAAGGCTCAGTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCCTGGAGCTGGAGTTACAGGTGCTTATGAAAGGCTCAGTGGG  848

seq1  ATTGCATCTCCAACCACTGAACCATTTGCTCAGCCCCATGAATTC  893
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCTCCAACCACTGAACCATTTGCTCAGCCCCATGAATTC  893