BAC Information

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BAC

Clone NameB6Ng01-077M21
Chromosome17 (Build37)
Map Location 62,942,701 - 63,084,097
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M21.bB6Ng01-077M21.g
ACCDH893684DH893685
length1,0281,020
definitionDH893684|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M21, 5' end.DH893685|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,942,701 - 62,943,731)(63,083,077 - 63,084,097)
sequence
gaattcttccacgccactactgacagcgtttatgctcgataatgagttgc
ttttccagcataacggctaacaggtgctgggaaatgctgagagcatttga
gactatgcagaaagttccactccccttgaggttttctgcagtgtagaaac
aagtggccaccaatgcaagtactagagtggctggtggcatacatcacttc
gttaagaaatgtcacatgttaatggggaacgcactaggttcccaagcaga
ggaccaattaagaaaagttctctgtggtctagttctgtggaattagacta
agttcttccaactattgatccttgagctcatttgtggtagcgttcggcat
ccacctcatggtttgttggcccacctcaaagactctaattagagtctttc
tttagtaagttgtccctctgctaactgataggggttaacaccagagagaa
aggatgcttctcactatttattttatatccaaccctattgaaaaggcctg
tattttcaagaaaattaagtgtgcgttttagaggatgcattgtgtcaatt
tagatgtgacctttgaaacgcagcacatttcttcagtgtgttatatatta
aaattcaaagccaggtcttcaattccagcagtattaattactcccactgt
gcctccactgtgctctctccacagccctcttagcccatcatatctgctta
ataaaggactttgcttgcaaggaacgagactcactctgtcactcaggtat
tagggacttattttacagggcacctatgctgctgatagaggcagaatctc
atgaaatcctcagagcagaagccacacagtggcctgacatggatcccagt
gctgcactgaaagagggactccgagttgaagaacgaggttctgaagaact
gaagagctgaagcaaggctttggccaagagagaggtccacgagatcacga
tggcaacctgttccttttctctcatttctcgatcttgacgttcatctact
cttgtcgtctgtaagagggaacacacaa
gaattcaagttccacaaagacattaaaattaaggtgatttggtggctcaa
agcagtagttttatttgttgttgttgttctgggcttttgttattgttgtt
tatttttttgcctgccagacatgcttaatgagagtggcatcattgaactt
tacagaaagcagggttgtctcactaacatgtctcgtttgcaaagtttata
aaatgacagttcataaagatacatttgggagccagggctcccgccttatc
actaaggaaaatgactccaagacttgccttgtcttttgtccaatgccaaa
tcttgccctgggaattttttggttttctttcttttctccttctcttggca
tggtagatatacatcagcttcccaatgagtgctaattgactgggaatgct
atttgcaatccttgaacatccttccgcccaccactcccccaggcttcccc
cgctacattgttcttcatagtggctgctcttctattaagcatggtcagga
ccctgagctctcctctcaagagatgggtgtgcattatgaaccctcctacc
aacaccgaaatcctgtcaatcacactgacctccaggggcctctagcaagc
ctggtaaacaagggggctgatgtctgcagtggcttttttattcttttttt
ttttttttttttttttttttgagcgtgctttctaattacttggttgtgta
tgcaaacactgaaggagcattaggcgcatcaagttgggggctccgctttt
tattaggaaacccttttattttctaaatagaatatgtcaaacatactctt
ttccttttagacagttatcctttcatctctccctgtacagaaattcagtc
tctggggcttgctaatttttgtattgaaatattcttaagcagaagggaat
tgctgtttacagtggcttcatttaaaagctttaatcgggttgtgctgtgc
ctataagagtttgatcctgctgggtacactcattgggtggaaaattcacc
tactttttttttcttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62942701_62943731
seq2: B6Ng01-077M21.b_47_1074

seq1  GAATTCTTCCACGCCACTACTGACAGCGTTTATGCTCGATAATGAGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACGCCACTACTGACAGCGTTTATGCTCGATAATGAGTTGC  50

seq1  TTTTCCAGCATAACGGCTAACAGGTGCTGGGAAATGCTGAGAGCATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGCATAACGGCTAACAGGTGCTGGGAAATGCTGAGAGCATTTGA  100

seq1  GACTATGCAGAAAGTTCCACTCCCCTTGAGGTTTTCTGCAGTGTAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGCAGAAAGTTCCACTCCCCTTGAGGTTTTCTGCAGTGTAGAAAC  150

seq1  AAGTGGCCACCAATGCAAGTACTAGAGTGGCTGGTGGCATACATCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCCACCAATGCAAGTACTAGAGTGGCTGGTGGCATACATCACTTC  200

seq1  GTTAAGAAATGTCACATGTTAATGGGGAACGCACTAGGTTCCCAAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAATGTCACATGTTAATGGGGAACGCACTAGGTTCCCAAGCAGA  250

seq1  GGACCAATTAAGAAAAGTTCTCTGTGGTCTAGTTCTGTGGAATTAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAATTAAGAAAAGTTCTCTGTGGTCTAGTTCTGTGGAATTAGACTA  300

seq1  AGTTCTTCCAACTATTGATCCTTGAGCTCATTTGTGGTAGCGTTCGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCAACTATTGATCCTTGAGCTCATTTGTGGTAGCGTTCGGCAT  350

seq1  CCACCTCATGGTTTGTTGGCCCACCTCAAAGACTCTAATTAGAGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCATGGTTTGTTGGCCCACCTCAAAGACTCTAATTAGAGTCTTTC  400

seq1  TTTAGTAAGTTGTCCCTCTGCTAACTGATAGGGGTTAACACCAGAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAGTTGTCCCTCTGCTAACTGATAGGGGTTAACACCAGAGAGAA  450

seq1  AGGATGCTTCTCACTATTTATTTTATATCCAACCCTATTGAAAAGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTTCTCACTATTTATTTTATATCCAACCCTATTGAAAAGGCCTG  500

seq1  TATTTTCAAGAAAATTAAGTGTGCGTTTTAGAGGATGCATTGTGTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAGAAAATTAAGTGTGCGTTTTAGAGGATGCATTGTGTCAATT  550

seq1  TAGATGTGACCTTTGAAACGCAGCACATTTCTTCAGTGTGTTATATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGACCTTTGAAACGCAGCACATTTCTTCAGTGTGTTATATATTA  600

seq1  AAATTCAAAGCCAGGTCTTCAATTCCAGCAGTATTAATTACTCCCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAGCCAGGTCTTCAATTCCAGCAGTATTAATTACTCCCACTGT  650

seq1  GCCTCCACTGTGCTCTCTCCACAGCCCTCTTAGCCCATCATATCTGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACTGTGCTCTCTCCACAGCCCTCTTAGCCCATCATATCTGCTTA  700

seq1  ATAAAGGACTTTGCTTGCAAGGAACGAGACTCACTCTGTCACTCAGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGACTTTGCTTGCAAGGAACGAGACTCACTCTGTCACTCAGGTAT  750

seq1  TAGGGACTTATTTTACAGGGCACCTATGCTGCTGATAGAGGCAGAATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACTTATTTTACAGGGCACCTATGCTGCTGATAGAGGCAGAATCTC  800

seq1  ATGAAATCCTCAGAGCAGAAGCCACACAGTGGCCTGACATGGATCCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCCTCAGAGCAGAAGCCACACAGTGGCCTGACATGGATCCCAGT  850

seq1  GCTGCACTGAAAGAGGGACTCCGAGTTGAAGAACGAGGTTCTGAAGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTGAAAGAGGGACTCCGAGTTGAAGAACGAGGTTCTGAAGAACT  900

seq1  GAAGAGCTGAAGCAAGGCTTTGGCCAAGGAGAGAGGTCCACGAGATCACG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGAGCTGAAGCAAGGCTTTGGCCAA-GAGAGAGGTCCACGAGATCACG  949

seq1  ATGGCAACCTGTTCCTTTTCCTCTCATTTCTCGATCTTGACGTTCATTCT  1000
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  ATGGCAACCTGTTCCTTTT-CTCTCATTTCTCGATCTTGACGTTCA-TCT  997

seq1  ACTCCTGTCGTCTGTTAAGAGGG-ACACACCA  1031
      |||| ||||||||| |||||||| |||||| |
seq2  ACTCTTGTCGTCTG-TAAGAGGGAACACACAA  1028

seq1: chr17_63083077_63084097
seq2: B6Ng01-077M21.g_70_1089 (reverse)

seq1  AAAAAAAAAAAAAAAAAGTA-GTGTATTTTCCCACGCAATGAAGTGTACC  49
      ||||||| |||||||||||| ||| ||||| |||| ||||| ||||||||
seq2  AAAAAAAGAAAAAAAAAGTAGGTGAATTTT-CCACCCAATG-AGTGTACC  48

seq1  CAGCAGGGATCCAAACTC-TATATGCAACAGCACAACCCGATTAAAAGCT  98
      ||||| |||| ||||||| |||| || |||||||||||||||| ||||||
seq2  CAGCA-GGAT-CAAACTCTTATAGGC-ACAGCACAACCCGATT-AAAGCT  94

seq1  TTTTAATGAAGCCACTGTAAACAGCATTTCCCTTCTGCTTTAGAATATTT  148
      ||| |||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TTTAAATGAAGCCACTGTAAACAGCAATTCCCTTCTGCTTAAGAATATTT  144

seq1  CAAATAC-AAAATTAGCAAGCCCCAGAGACTGGAATTTCTGTTACA-GGA  196
      | ||||| ||||||||||||||||||||||| ||||||||| |||| |||
seq2  C-AATACAAAAATTAGCAAGCCCCAGAGACT-GAATTTCTG-TACAGGGA  191

seq1  GAGATGAAAGGTTAACTGTCTAAAAGG-AAAGAGTATGTTTGACATATTC  245
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GAGATGAAAGGATAACTGTCTAAAAGGAAAAGAGTATGTTTGACATATTC  241

seq1  TATTTAGAAAATAAAAGGGTTTCCTAAT-AAAAGCAGAGCCCCC-ACTTG  293
      |||||||||||||||||||||||||||| |||||| |||||||| |||||
seq2  TATTTAGAAAATAAAAGGGTTTCCTAATAAAAAGCGGAGCCCCCAACTTG  291

seq1  ATGCGCCTAATGCTCCTTCAGTGTTTGCATACACAACCAAGTAATTAGAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCTAATGCTCCTTCAGTGTTTGCATACACAACCAAGTAATTAGAA  341

seq1  AGCACGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAT-AAAAAGCCA  392
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCACGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAAAAAGCCA  391

seq1  CTGCAGACATCAGCCCCCTTGTTTACCAGGCTTGCTAGAGGCCCCTGGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACATCAGCCCCCTTGTTTACCAGGCTTGCTAGAGGCCCCTGGAG  441

seq1  GTCAGTGTGATTGACAGGATTTCGGTGTTGGTAGGAGGGTTCATAATGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTGATTGACAGGATTTCGGTGTTGGTAGGAGGGTTCATAATGCA  491

seq1  CACCCATCTCTTGAGAGGAGAGCTCAGGGTCCTGACCATGCTTAATAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTCTTGAGAGGAGAGCTCAGGGTCCTGACCATGCTTAATAGAA  541

seq1  GAGCAGCCACTATGAAGAACAATGTAGCGGGGGAAGCCTGGGGGAGTGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCACTATGAAGAACAATGTAGCGGGGGAAGCCTGGGGGAGTGGT  591

seq1  GGGCGGAAGGATGTTCAAGGATTGCAAATAGCATTCCCAGTCAATTAGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGAAGGATGTTCAAGGATTGCAAATAGCATTCCCAGTCAATTAGCA  641

seq1  CTCATTGGGAAGCTGATGTATATCTACCATGCCAAGAGAAGGAGAAAAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGGAAGCTGATGTATATCTACCATGCCAAGAGAAGGAGAAAAGA  691

seq1  AAGAAAACCAAAAAATTCCCAGGGCAAGATTTGGCATTGGACAAAAGACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCAAAAAATTCCCAGGGCAAGATTTGGCATTGGACAAAAGACA  741

seq1  AGGCAAGTCTTGGAGTCATTTTCCTTAGTGATAAGGCGGGAGCCCTGGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTCTTGGAGTCATTTTCCTTAGTGATAAGGCGGGAGCCCTGGCT  791

seq1  CCCAAATGTATCTTTATGAACTGTCATTTTATAAACTTTGCAAACGAGAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGTATCTTTATGAACTGTCATTTTATAAACTTTGCAAACGAGAC  841

seq1  ATGTTAGTGAGACAACCCTGCTTTCTGTAAAGTTCAATGATGCCACTCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTGAGACAACCCTGCTTTCTGTAAAGTTCAATGATGCCACTCTC  891

seq1  ATTAAGCATGTCTGGCAGGCAAAAAAATAAACAACAATAACAAAAGCCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCATGTCTGGCAGGCAAAAAAATAAACAACAATAACAAAAGCCCA  941

seq1  GAACAACAACAACAAATAAAACTACTGCTTTGAGCCACCAAATCACCTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAACAACAAATAAAACTACTGCTTTGAGCCACCAAATCACCTTA  991

seq1  ATTTTAATGTCTTTGTGGAACTTGAATTC  1021
      |||||||||||||||||||||||||||||
seq2  ATTTTAATGTCTTTGTGGAACTTGAATTC  1020