BAC Information

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BAC

Clone NameB6Ng01-080L01
Chromosome17 (Build37)
Map Location 82,029,424 - 82,150,815
singlet/doubletdoublet
Overlap geneSlc8a1
Upstream geneMap4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080L01.bB6Ng01-080L01.g
ACCDH895757DH895758
length1,1521,079
definitionDH895757|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L01, 5' end.DH895758|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,029,424 - 82,030,596)(82,149,731 - 82,150,815)
sequence
gaattctacaatatttctcccatcttttcaaatcaatagataaatcataa
tttgctctactggtaatgagttaatatatgtactatgaagagtggagaac
taacttatttaaattagttcgggttatgcctaaagataaataatgttatc
tttactctacctgagaaacagtattaaatagagactatagagatggctat
tcttaatcagttaatagggagtaactaggggcatcctgaagatggcaata
cttggagaatacactgagatttatgccacctagatatccaaagcattgac
tgcgtaactggaacacttgtgttaaacacatctgaggccagtgcatggga
actatctattaaacacatgactcaggctttagagcagtggttctcgactc
ctgagtcatagccccttcaacaaacttctacctccaaaaatatttacatt
acaatttacaaaagtagcaaaattatggttatgaaggagcaccaagaata
atttgataggtgtgagtcaccacagtatgagcactgtattacaggtccca
gaataaggaaggttgggaaccactggcttaccacacacttcttggagctt
gcacaaccaggagtaagagtgatatgagatagggcaagaccagggggtct
aagataaggtgatgagtaactgtcttttaagattataaggaacttcaaga
cgtcccttcttcaatgaacaagagcagaattgccattgctacagaggcaa
ccccacaatcatgatctgcttgactgacaactctaccatttctctgaaga
aataagagggaaaaaatatcatttttttcatccatgtggggaaaataacg
aaaaaaaaaaatctgccaacgtggtttgactagctaacctctggaggtat
ggttgccatctacttaaactgcatatttcccccatctttattccagcaga
catgtttactaccaagttcagtagatattctgtagtagactcactgacaa
aataggatgtggtgagaaagctgacgagagaaacataaaatagatgtccc
agttctgatgactgctgccccatacataatgttttctaggaaggtagtcc
cactttctaaggcagcatacagtgacatgccattcccttctcactgtact
at
gaattccattttttctctttaacaatgactaaacatattgacattgtttc
cccatttgtataggtcatacttataagaatgattctaaaacacatatatg
taaaatattaaagactaacactgcatatagactaatatgtataatattaa
aaactaactaaacccccaacatggatattaaaatagaactgtgtctttga
gtgtctgtttgttatagtacattaacatattccatttatttattttatga
tgttatattaattcaaaatataacctcattatttactatatacctatcac
catattcaaaaaatgtcaggaaaaaatatgttcaattgttaagatgagga
tggactttgcacaaaactcaagagaaacaaaattaattaattctaggaag
taacacactattatttatcacttgcaaaacaaaaaacaaaaacaaaaaac
aaaaaaacagaatttaagcccaactccagaagaggaagcaatctacacta
gtggacaagaaatctgagagagtaatgaaactcaagacttgtggcttaaa
gagctttaggtacacattcatgagcagggccactcttaaagttaattgtc
cattgtaaacaggaagctgatgtgataatgatccttgtccctatgtcccc
tctggtggtcccaaggacagctgagggggctgaacagctgtactttattt
atttatttatttttaattcacgtgtcaacacccatctgccatttctcttc
acttgtaaagtaaataaatgttaagtttcggttgaaaataaccaatccct
gagattgtttttgccaacgaatgctttgttaccgtcactgaatgagaatt
gtgcttataacccctagtcattaagttccacaaccaattctgaagtaacc
taggcaaattcaaattgccagacaggtggaaattgatcttcttggattag
cagactctctaggaaagctgtcttctttcagtttggggtagtctaggttc
aacttgggagcagctgccttggagggcatcagagtgtcttctttctgcag
ctttaggagtgtagagatggaatttcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82029424_82030596
seq2: B6Ng01-080L01.b_45_1196

seq1  GAATTCTACAATATTTCTCCCATCTTTTCAAATCAATAGATAAATCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAATATTTCTCCCATCTTTTCAAATCAATAGATAAATCATAA  50

seq1  TTTGCTCTACTGGTAATGAGTTAATATATGTACTATGAAGAGTGGAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTACTGGTAATGAGTTAATATATGTACTATGAAGAGTGGAGAAC  100

seq1  TAACTTATTTAAATTAGTTCGGGTTATGCCTAAAGATAAATAATGTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATTTAAATTAGTTCGGGTTATGCCTAAAGATAAATAATGTTATC  150

seq1  TTTACTCTACCTGAGAAACAGTATTAAATAGAGACTATAGAGATGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTACCTGAGAAACAGTATTAAATAGAGACTATAGAGATGGCTAT  200

seq1  TCTTAATCAGTTAATAGGGAGTAACTAGGGGCATCCTGAAGATGGCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCAGTTAATAGGGAGTAACTAGGGGCATCCTGAAGATGGCAATA  250

seq1  CTTGGAGAATACACTGAGATTTATGCCACCTAGATATCCAAAGCATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAATACACTGAGATTTATGCCACCTAGATATCCAAAGCATTGAC  300

seq1  TGCGTAACTGGAACACTTGTGTTAAACACATCTGAGGCCAGTGCATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAACTGGAACACTTGTGTTAAACACATCTGAGGCCAGTGCATGGGA  350

seq1  ACTATCTATTAAACACATGACTCAGGCTTTAGAGCAGTGGTTCTCGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTATTAAACACATGACTCAGGCTTTAGAGCAGTGGTTCTCGACTC  400

seq1  CTGAGTCATAGCCCCTTCAACAAACTTCTACCTCCAAAAATATTTACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATAGCCCCTTCAACAAACTTCTACCTCCAAAAATATTTACATT  450

seq1  ACAATTTACAAAAGTAGCAAAATTATGGTTATGAAGGAGCACCAAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTACAAAAGTAGCAAAATTATGGTTATGAAGGAGCACCAAGAATA  500

seq1  ATTTGATAGGTGTGAGTCACCACAGTATGAGCACTGTATTACAGGTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAGGTGTGAGTCACCACAGTATGAGCACTGTATTACAGGTCCCA  550

seq1  GAATAAGGAAGGTTGGGAACCACTGGCTTACCACACACTTCTTGGAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGAAGGTTGGGAACCACTGGCTTACCACACACTTCTTGGAGCTT  600

seq1  GCACAACCAGGAGTAAGAGTGATATGAGATAGGGCAAGACCAGGGGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACCAGGAGTAAGAGTGATATGAGATAGGGCAAGACCAGGGGGTCT  650

seq1  AAGATAAGGTGATGAGTAACTGTCTTTTAAGATTATAAGGAACTTCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGGTGATGAGTAACTGTCTTTTAAGATTATAAGGAACTTCAAGA  700

seq1  CGTCCCTTCTTCAATGAACAAGAGCAGAATTGCCATTGCTACAGAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCTTCTTCAATGAACAAGAGCAGAATTGCCATTGCTACAGAGGCAA  750

seq1  CCCCACAATCATGATCTGCTTGACTGACAACTCTACCATTTCTCTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAATCATGATCTGCTTGACTGACAACTCTACCATTTCTCTGAAGA  800

seq1  AATAAGAGGGAAAAAATATCATTTTTTTCATCCATGTGGGGAAAATAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGGGAAAAAATATCATTTTTTTCATCCATGTGGGGAAAATAACG  850

seq1  AAAAAAAAAAAATCTGCCAACGTGGTTTGACTAGCTAACCTCTGGAGGTA  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAAAAAAATCTGCCAACGTGGTTTGACTAGCTAACCTCTGGAGGTA  899

seq1  TGGTTGCCATCTACTTAAACTGCATATTTCCCCCATCTTTATTCCAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCATCTACTTAAACTGCATATTTCCCCCATCTTTATTCCAGCAG  949

seq1  ACATGTTTACTACCAAGTTCAAGTAAGATATTCTGTAGTAGACTCACTGA  1000
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  ACATGTTTACTACCAAGTTC-AGT-AGATATTCTGTAGTAGACTCACTGA  997

seq1  ACAAAAATAGGATGTGGGTGAAGAAAGCTGACAGAGAGAAACATAAAATA  1050
         |||||||||||| |||| ||||||||||| |||||||||||||||||
seq2  --CAAAATAGGATGT-GGTG-AGAAAGCTGAC-GAGAGAAACATAAAATA  1042

seq1  GATGTCCCCAGTTTCTGATGACTGCTGGCCCCATACCATAAATGTCTCCA  1100
      ||||| ||||| |||||||||||||| |||||||| ||| ||||| | | 
seq2  GATGT-CCCAG-TTCTGATGACTGCT-GCCCCATA-CAT-AATGTTTTCT  1087

seq1  AAGGAAAGGTAGTTCCCACCTTTCTAAAGCAGCAATACAGTGACCATGCA  1150
      |  | ||||||| ||||| |||||||| ||||| ||||||||| ||||| 
seq2  A--GGAAGGTAG-TCCCA-CTTTCTAAGGCAGC-ATACAGTGA-CATGC-  1130

seq1  CATCCCCTTCTCACTGTAACTAT  1173
      ||| ||||||||||||| |||||
seq2  CATTCCCTTCTCACTGT-ACTAT  1152

seq1: chr17_82149731_82150815
seq2: B6Ng01-080L01.g_68_1146 (reverse)

seq1  GCTGAAATTCCATCTCTACCACTCCTAAAGCTGCAAGAAAG-AGACACTT  49
      |||||||||||||||||| ||||||||||||||| |||||| |||||| |
seq2  GCTGAAATTCCATCTCTA-CACTCCTAAAGCTGC-AGAAAGAAGACAC-T  47

seq1  CTGATTGCCCT-CAAGGCAGCTGCTCCCCAAGTTGAACCTAGACTACCCC  98
      |||| |||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CTGA-TGCCCTCCAAGGCAGCTGCT-CCCAAGTTGAACCTAGACTACCCC  95

seq1  AAACTTGAAAGAAGACAGCTTTTCCTTAGAGAGTCTGCTAATCCAAGAAG  148
      |||| |||||||||||||||||  | ||||||||||||||||||||||||
seq2  AAAC-TGAAAGAAGACAGCTTT--CCTAGAGAGTCTGCTAATCCAAGAAG  142

seq1  ATCAATTTCCACCTGTCTGGCAATTTGAATTTGCCTAGGTTACTTCAGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCCACCTGTCTGGCAATTTGAATTTGCCTAGGTTACTTCAGAA  192

seq1  TTGGTTGTGGAACTTAATGACTAGGGGTTATAAGCACAATTCTCATTCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTGGAACTTAATGACTAGGGGTTATAAGCACAATTCTCATTCAG  242

seq1  TGACGGTAACAAAGCATTCGTTGGCAAAAACAATCTCAGGGATTGGTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTAACAAAGCATTCGTTGGCAAAAACAATCTCAGGGATTGGTTAT  292

seq1  TTTCAACCGAAACTTAACATTTATTTACTTTACAAGTGAAGAGAAATGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACCGAAACTTAACATTTATTTACTTTACAAGTGAAGAGAAATGGC  342

seq1  AGATGGGTGTTGACACGTGAATTAAAAATAAATAAATAAATAAAGTACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTGTTGACACGTGAATTAAAAATAAATAAATAAATAAAGTACAG  392

seq1  CTGTTCAGCCCCCTCAGCTGTCCTTGGGACCACCAGAGGGGACATAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGCCCCCTCAGCTGTCCTTGGGACCACCAGAGGGGACATAGGGA  442

seq1  CAAGGATCATTATCACATCAGCTTCCTGTTTACAATGGACAATTAACTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCATTATCACATCAGCTTCCTGTTTACAATGGACAATTAACTTT  492

seq1  AAGAGTGGCCCTGCTCATGAATGTGTACCTAAAGCTCTTTAAGCCACAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGCCCTGCTCATGAATGTGTACCTAAAGCTCTTTAAGCCACAAG  542

seq1  TCTTGAGTTTCATTACTCTCTCAGATTTCTTGTCCACTAGTGTAGATTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTTCATTACTCTCTCAGATTTCTTGTCCACTAGTGTAGATTGC  592

seq1  TTCCTCTTCTGGAGTTGGGCTTAAATTCTGTTTTTTTGTTTTTTGTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCTGGAGTTGGGCTTAAATTCTGTTTTTTTGTTTTTTGTTTTT  642

seq1  GTTTTTTGTTTTGCAAGTGATAAATAATAGTGTGTTACTTCCTAGAATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTGCAAGTGATAAATAATAGTGTGTTACTTCCTAGAATTA  692

seq1  ATTAATTTTGTTTCTCTTGAGTTTTGTGCAAAGTCCATCCTCATCTTAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTGTTTCTCTTGAGTTTTGTGCAAAGTCCATCCTCATCTTAAC  742

seq1  AATTGAACATATTTTTTCCTGACATTTTTTGAATATGGTGATAGGTATAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACATATTTTTTCCTGACATTTTTTGAATATGGTGATAGGTATAT  792

seq1  AGTAAATAATGAGGTTATATTTTGAATTAATATAACATCATAAAATAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAATGAGGTTATATTTTGAATTAATATAACATCATAAAATAAAT  842

seq1  AAATGGAATATGTTAATGTACTATAACAAACAGACACTCAAAGACACAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAATATGTTAATGTACTATAACAAACAGACACTCAAAGACACAGT  892

seq1  TCTATTTTAATATCCATGTTGGGGGTTTAGTTAGTTTTTAATATTATACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTAATATCCATGTTGGGGGTTTAGTTAGTTTTTAATATTATACA  942

seq1  TATTAGTCTATATGCAGTGTTAGTCTTTAATATTTTACATATATGTGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTCTATATGCAGTGTTAGTCTTTAATATTTTACATATATGTGTTT  992

seq1  TAGAATCATTCTTATAAGTATGACCTATACAAATGGGGAAACAATGTCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCATTCTTATAAGTATGACCTATACAAATGGGGAAACAATGTCAA  1042

seq1  TATGTTTAGTCATTGTTAAAGAGAAAAAATGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGTCATTGTTAAAGAGAAAAAATGGAATTC  1079