BAC Information

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BAC

Clone NameB6Ng01-081D16
Chromosome17 (Build37)
Map Location 24,036,599 - 24,209,640
singlet/doubletdoublet
Overlap geneDcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5
Upstream geneLOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157
Downstream genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081D16.bB6Ng01-081D16.g
ACCDH896142DH896143
length1,155934
definitionDH896142|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D16, 5' end.DH896143|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,208,478 - 24,209,640)(24,036,599 - 24,037,536)
sequence
gaattcatgttcggggccaggtgtcaaaaaatcttagggttgtgaaagag
accaggtagagaatctttttccatctccttttcagacttcatttccccac
cgcctttgaaaagggtagggatttccagcttagtttgtggtttgtctatc
tttaatttaattaaacgctaatactgttaatacctgtggtaatagaaagt
atttcaattattatcattacaaaagttgtgtgtcgtactgcatactgaaa
aattagtattgtgcaggattgaaacttaggaacaaatcgttcactcccct
ttccccctaggcagtttattagccttgtactaactgagttttctggttca
gcctacatgatggtgcttgattttgtgccttgccagcctgaaagtgacta
ctcaggaggttttccagaaagatcgagcccattgcactttaaacggccta
acagagcaccttctcagtgagggaggcctggcattatgaccaggaaatga
actcttgagttactgcaaaataatcaagaagttagagtttgagatactac
tatggtagttcttcatatccttcctcccagctgttaccattactgagttg
accaaatctcttcactcttagaggattgccttctagaaaatggcagaagt
ctgacagatagaaataggcttttgtcagtgctgtttcctttttatagtga
gggtgtgtactttacgattggtttttcaaacagtaggcatttatagtcat
tcttgtttttctacccaagcatccctgtcttgtgtattaagtcagatttt
aagtcagccttggcccttggcttctggtgtctttttgcttacttagcact
ggaacaaggtatataggggctgtttgacttcagcatagttaaagtcaaat
atatctcttcattttactatcttttaagattactttataaattatcttat
tgtgctgatgagatggcacctgctgccaaccaaacctgaaacttgagtct
cttaggattcacaaggtggaaggaaaaacctgctctaaaagttaaacctc
tgagtcagcactttgggaggcagaaggctgtacgaatatataagtttgag
gcagcctggtctacaaggcgagttcagacaggcagtttaccaagaaacgc
gactc
gaattcatttgtaaattcctactgttgcctcttgggttgatcaaagaagg
ttggagatgattctccttcctgaagtcaaccacaaaaggcccctcaggcc
ccaaacttgatagcaaaagtctggtctgtcaggtttgagtccaaagaggc
aagggtcagagtgagtctctaataagacattagtggtaagatatgttgga
agcagaaaacccaaagtcagtcctttgatagtggggggcgggggggcagc
cctgcttgagtcctggactggatttctgctttgtacttagagaacaccag
acacacacataaaaaaacaggtagagtgtatgaacagggaagagaaagct
ctggaacactatcaaagatggggttgctgatgaacttagcagttcggctg
gtgaagtccccaaggggcatggaaggcacctagactgtggcctgctgttt
ataagtgacctaggctgaggatgtcccagcaaggccaggggcagctcccc
atggcagtcgctgctccttttgaagttttcagtgagcagcttcccaaggt
cttctctgtttgtgatgtcttctgtgctcatgagggaactggttcctctc
atactgagtagtgagctttagatcacagtgtctgagagtggcgttttctt
tttcagtatgtcttaagaagccaaaagagcggggaggggtaccaaggagc
caggaagtcaggtcatgcactgtcgggatgagtattcaagacttttcctc
tctcctagaattcagctcaactataatgacaacgaggacggtcaagtgta
tggctctactgccgggaaggtgatggtagccagactgtctaaggaagagc
acatcattggggtcgaaggcacatataatcttctgctttaactcagatag
tctttacacactcagccgcgctgctaatggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24208478_24209640
seq2: B6Ng01-081D16.b_46_1200 (reverse)

seq1  GAGTCAGCGTTTCTCTGTGTAAACCTGGCTGTCTTGAAACTCGCTCTGTA  50
      ||||| |||||||| || ||||| ||| ||||||   |||||||  ||||
seq2  GAGTC-GCGTTTCT-TG-GTAAA-CTGCCTGTCT--GAACTCGCCTTGTA  44

seq1  GACCAGGCTGGCCTCAAACTTATATA-TCGT-CATGCCTCTGCCTCCCAA  98
      ||||||||| |||||||||||||||| |||| ||  | ||||||||||||
seq2  GACCAGGCT-GCCTCAAACTTATATATTCGTACAGCCTTCTGCCTCCCAA  93

seq1  AGTGCTTGAACTCAGA-GTTTAACTTTTAAGAGTCAGTTTTTTCCTTCCA  147
      ||||||   ||||||| ||||||||||| |||| ||| ||||||||||||
seq2  AGTGCT--GACTCAGAGGTTTAACTTTT-AGAG-CAGGTTTTTCCTTCCA  139

seq1  CCTTGTGGATCCT-AGAGACTCAAGTTTTCAGGTTTGGTTGGCAGCAGGT  196
      ||||||| ||||| ||||||||||| ||||||||||||||||||||||||
seq2  CCTTGTGAATCCTAAGAGACTCAAG-TTTCAGGTTTGGTTGGCAGCAGGT  188

seq1  GCCATCTCATCAGCACAATAAAGATAATTTATAAAGTAATCTTAAAAGAT  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCATCTCATCAGCACAAT-AAGATAATTTATAAAGTAATCTTAAAAGAT  237

seq1  AGTAAAATGAAGAGATATATTTGACTTTAACTATGCTGAAGTCAAACAG-  295
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAAAATGAAGAGATATATTTGACTTTAACTATGCTGAAGTCAAACAGC  287

seq1  CCCTATATACCTTGTTCCAGTGCTAAGTAAGCAAAAAGACACCAGAAGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATACCTTGTTCCAGTGCTAAGTAAGCAAAAAGACACCAGAAGCC  337

seq1  AAGGGCCAAGGCTGACTTAAAATCTGACTTAATACACAAGACAGGGATGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAAGGCTGACTTAAAATCTGACTTAATACACAAGACAGGGATGC  387

seq1  TTGGGTAGAAAAACAAGAATGACTATAAATGCCTACTGTTTGAAAAACCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAGAAAAACAAGAATGACTATAAATGCCTACTGTTTGAAAAACCA  437

seq1  ATCGTAAAGTACACACCCTCACTATAAAAAGGAAACAGCACTGACAAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAAAGTACACACCCTCACTATAAAAAGGAAACAGCACTGACAAAAG  487

seq1  CCTATTTCTATCTGTCAGACTTCTGCCATTTTCTAGAAGGCAATCCTCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCTATCTGTCAGACTTCTGCCATTTTCTAGAAGGCAATCCTCTA  537

seq1  AGAGTGAAGAGATTTGGTCAACTCAGTAATGGTAACAGCTGGGAGGAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAGAGATTTGGTCAACTCAGTAATGGTAACAGCTGGGAGGAAGG  587

seq1  ATATGAAGAACTACCATAGTAGTATCTCAAACTCTAACTTCTTGATTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGAACTACCATAGTAGTATCTCAAACTCTAACTTCTTGATTATT  637

seq1  TTGCAGTAACTCAAGAGTTCATTTCCTGGTCATAATGCCAGGCCTCCCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTAACTCAAGAGTTCATTTCCTGGTCATAATGCCAGGCCTCCCTC  687

seq1  ACTGAGAAGGTGCTCTGTTAGGCCGTTTAAAGTGCAATGGGCTCGATCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGGTGCTCTGTTAGGCCGTTTAAAGTGCAATGGGCTCGATCTT  737

seq1  TCTGGAAAACCTCCTGAGTAGTCACTTTCAGGCTGGCAAGGCACAAAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAACCTCCTGAGTAGTCACTTTCAGGCTGGCAAGGCACAAAATC  787

seq1  AAGCACCATCATGTAGGCTGAACCAGAAAACTCAGTTAGTACAAGGCTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCATCATGTAGGCTGAACCAGAAAACTCAGTTAGTACAAGGCTAA  837

seq1  TAAACTGCCTAGGGGGAAAGGGGAGTGAACGATTTGTTCCTAAGTTTCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCCTAGGGGGAAAGGGGAGTGAACGATTTGTTCCTAAGTTTCAA  887

seq1  TCCTGCACAATACTAATTTTTCAGTATGCAGTACGACACACAACTTTTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACAATACTAATTTTTCAGTATGCAGTACGACACACAACTTTTGT  937

seq1  AATGATAATAATTGAAATACTTTCTATTACCACAGGTATTAACAGTATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATAATTGAAATACTTTCTATTACCACAGGTATTAACAGTATTA  987

seq1  GCGTTTAATTAAATTAAAGATAGACAAACCACAAACTAAGCTGGAAATCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTAATTAAATTAAAGATAGACAAACCACAAACTAAGCTGGAAATCC  1037

seq1  CTACCCTTTTCAAAGGCGGTGGGGAAATGAAGTCTGAAAAGGAGATGGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTTTCAAAGGCGGTGGGGAAATGAAGTCTGAAAAGGAGATGGAA  1087

seq1  AAAGATTCTCTACCTGGTCTCTTTCACAACCCTAAGATTTTTTGACACCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTCTACCTGGTCTCTTTCACAACCCTAAGATTTTTTGACACCT  1137

seq1  GGCCCCGAACATGAATTC  1163
      ||||||||||||||||||
seq2  GGCCCCGAACATGAATTC  1155

seq1: chr17_24036599_24037536
seq2: B6Ng01-081D16.g_69_1002

seq1  GAATTCATTTGTAAATTCCTACTGTTGCCTCTTGGGTTGATCAAAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTAAATTCCTACTGTTGCCTCTTGGGTTGATCAAAGAAGG  50

seq1  TTGGAGATGATTCTCCTTCCTGAAGTCAACCACAAAAGGCCCCTCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGATTCTCCTTCCTGAAGTCAACCACAAAAGGCCCCTCAGGCC  100

seq1  CCAAACTTGATAGCAAAAGTCTGGTCTGTCAGGTTTGAGTCCAAAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTGATAGCAAAAGTCTGGTCTGTCAGGTTTGAGTCCAAAGAGGC  150

seq1  AAGGGTCAGAGTGAGTCTCTAATAAGACATTAGTGGTAAGATATGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAGAGTGAGTCTCTAATAAGACATTAGTGGTAAGATATGTTGGA  200

seq1  AGCAGAAAACCCAAAGTCAGTCCTTTGATAGTGGGGGGCGGGGGGGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAACCCAAAGTCAGTCCTTTGATAGTGGGGGGCGGGGGGGCAGC  250

seq1  CCTGCTTGAGTCCTGGACTGGATTTCTGCTTTGTACTTAGAGAACACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGAGTCCTGGACTGGATTTCTGCTTTGTACTTAGAGAACACCAG  300

seq1  ACACACACATAAAAAAACAGGTAGAGTGTATGAACAGGGAAGAGAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATAAAAAAACAGGTAGAGTGTATGAACAGGGAAGAGAAAGCT  350

seq1  CTGGAACACTATCAAAGATGGGGTTGCTGATGAACTTAGCAGTTCGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACACTATCAAAGATGGGGTTGCTGATGAACTTAGCAGTTCGGCTG  400

seq1  GTGAAGTCCCCAAGGGGCATGGAAGGCACCTAGACTGTGGCCTGCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCCCCAAGGGGCATGGAAGGCACCTAGACTGTGGCCTGCTGTTT  450

seq1  ATAAGTGACCTAGGCTGAGGATGTCCCAGCAAGGCCAGGGGCAGCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGACCTAGGCTGAGGATGTCCCAGCAAGGCCAGGGGCAGCTCCCC  500

seq1  ATGGCAGTCGCTGCTCCTTTTGAAGTTTTCAGTGAGCAGCTTCCCAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTCGCTGCTCCTTTTGAAGTTTTCAGTGAGCAGCTTCCCAAGGT  550

seq1  CTTCTCTGTTTGTGATGTCTTCTGTGCTCATGAGGGAACTGGTTCCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTTTGTGATGTCTTCTGTGCTCATGAGGGAACTGGTTCCTCTC  600

seq1  ATACTGAGTAGTGAGCTTTAGATCACAGTGTCTGAGAGTGGCGTTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGTAGTGAGCTTTAGATCACAGTGTCTGAGAGTGGCGTTTTCTT  650

seq1  TTTCAGTATGTCTTAAGAAGCCAAAAGAGCGGGGAGGGGTACCAAGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTATGTCTTAAGAAGCCAAAAGAGCGGGGAGGGGTACCAAGGAGC  700

seq1  CAGGAAGTCAGGTCATGCACTGTCGGGATGAGTATTCAAGACTTTTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCAGGTCATGCACTGTCGGGATGAGTATTCAAGACTTTTCCTC  750

seq1  TCTCCTAGAATTCAGCTCAACTATAATGACAACGAGGACGGTCAAGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGAATTCAGCTCAACTATAATGACAACGAGGACGGTCAAGTGTA  800

seq1  TGGCTCTACTGCCGGGAAGGTGATGGTAGCCAGACTGTCTAAGGAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTACTGCCGGGAAGGTGATGGTAGCCAGACTGTCTAAGGAAGAGC  850

seq1  ACATCATTGGGGTCGAAGGCACATATAATCCTTCTGCTTTAACTCAGATA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATCATTGGGGTCGAAGGCACATATAAT-CTTCTGCTTTAACTCAGATA  899

seq1  GTCTTTACAACCACTCAGCCGCGCCTGCTAATGGTGGG  938
      |||||||||  |||||||||||| ||||||||||||||
seq2  GTCTTTACA--CACTCAGCCGCG-CTGCTAATGGTGGG  934