BAC Information

Click to search

BAC

Clone NameB6Ng01-082B01
Chromosome17 (Build37)
Map Location 76,541,485 - 76,647,641
singlet/doubletdoublet
Overlap genenone
Upstream geneLtbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneLOC100043886, EG624348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082B01.bB6Ng01-082B01.g
ACCDH896730DH896731
length9901,120
definitionDH896730|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B01, 5' end.DH896731|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,541,485 - 76,542,480)(76,646,505 - 76,647,641)
sequence
gaattcatccgaagagaatgtatttactggcacaaatttctacggattgg
agagtttcggatcaagctggtagagacaggaggagttcaagctcagcttc
agctcatgctgagtcgaaggcagacaacctggggtgcatgcgcacttgta
ctcaaaaagaaaatcaaaaagatatgtagccgctgcttcggcagtgacac
aagggaactgagaatactttttctgaactcagcacagttgtagcagaaac
ccaatgcagaaagcaatttgtttaaactctacaagagagggagcagatat
gtccagaaatctggcttcacgggttgcgaggaccacggtttgcggcagga
agcaccacctgcagcagacgcttactatgccaagcaagaaacattgaatg
gagctatagtatctttaatagactgtatctttcctcttgattagtattta
ttcatgatcactgatgtaactctgtcatgcgcctgaactctgagaggaat
gatgaaaaggtggaactgaggaacgcagcaagcatggagattcctggcgt
tgctggtaggtgctctgggagatgctacagaagaaatggactgcccgtaa
atacacacaccagccaaagagattagagctgtttacggttggcaatagca
atcttctccctggtctcacagtttctgaagctgtagcactctatgacttc
cacaaaattcacacagtccttcaccttctaaaagacacaaaaaaagaact
tcaatggaaaatgctacacttaaaccaggaaccacaaagaaaagcccaag
aaactagtatctaaaatgggattgtctgatggtaggtcatgagtttcgat
accgttgatgagaagttctttccaggcatgcatttagatgttaaattgaa
tgattttcttttcatcagttagtgtgagtccattacatacagcccaccag
agagagatgctttatgctatgtacttagaagggtggtgtg
gaattcagttgatgcataaacataaaaagttatcaaaaatgaagagttaa
tgagaaaggaagagaaatatcatgagagaagtgatgttgaaaaagcctag
gcatctcactcacattatagctgtgagtgtacaagacagtgattaaggta
accacgataaggtgagaaaaagcataaccaagatccctgttcttctggct
tacaaatagttagaaacaaaaagacaacagtgcatgaatgaactgacaac
agaatcaatgcattagagttcagataagtgccacaaataaattaaagcaa
gagaaaagactaaggattaacaaggaaggatatggagggtttggttctga
cagtggagcctggataatcctgacaatggcatatttgtgctaaacaggcc
cagatagagctgagaaaaagcttgccaagcagtaagtacatgaagcttca
aggcacaaactgtcaactccagcatcttttgacatgtttcagaaaaaaaa
aaaaaaaagagcagtgtggctcatgggaaatgagcaaagcaaggagtgac
atgaatcaagtgtcacagcctctgtccatactaagggggccatggaatat
caacaaaagtttatttgggtacatttacagttttctttaagaagtgtctg
tgccgccaggcgtggtggcgcacgcctttaatcccagcactcgggaggca
gaggcaggtgtttttctgagttcaaggccagcctggtctacacagtgagt
tccaggacagccagggaaaccctgtctcaaacacaacaacaaaaagaagt
gtctgcgccaaaacataatatgatttaaatttgtaaaggaatgtttttgt
tcactcatgcttagtactaaagatgaaagcagtatgctatctctagacat
gttttctttcccttttttggatttattatggttttaattattatttattt
caccccaatattttaattccccctacctgcccacctcttggtctgttcat
acaattccttaccttctcctctgccctgtctccatggcctgtcccacccc
atccccgcccactgactctaactctgcagcctcagtctcttgaggtaagg
tgcacacatctctgtaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76541485_76542480
seq2: B6Ng01-082B01.b_45_1034

seq1  GAATTCATCCGAAGAGAATGTATTTACTGGCACAAATTTCTACGGATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCGAAGAGAATGTATTTACTGGCACAAATTTCTACGGATTGG  50

seq1  AGAGTTTCGGATCAAGCTGGTAGAGACAGGAGGAGTTCAAGCTCAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCGGATCAAGCTGGTAGAGACAGGAGGAGTTCAAGCTCAGCTTC  100

seq1  AGCTCATGCTGAGTCGAAGGCAGACAACCTGGGGTGCATGCGCACTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGCTGAGTCGAAGGCAGACAACCTGGGGTGCATGCGCACTTGTA  150

seq1  CTCAAAAAGAAAATCAAAAAGATATGTAGCCGCTGCTTCGGCAGTGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAGAAAATCAAAAAGATATGTAGCCGCTGCTTCGGCAGTGACAC  200

seq1  AAGGGAACTGAGAATACTTTTTCTGAACTCAGCACAGTTGTAGCAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACTGAGAATACTTTTTCTGAACTCAGCACAGTTGTAGCAGAAAC  250

seq1  CCAATGCAGAAAGCAATTTGTTTAAACTCTACAAGAGAGGGAGCAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCAGAAAGCAATTTGTTTAAACTCTACAAGAGAGGGAGCAGATAT  300

seq1  GTCCAGAAATCTGGCTTCACGGGTTGCGAGGACCACGGTTTGCGGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAAATCTGGCTTCACGGGTTGCGAGGACCACGGTTTGCGGCAGGA  350

seq1  AGCACCACCTGCAGCAGACGCTTACTATGCCAAGCAAGAAACATTGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACCTGCAGCAGACGCTTACTATGCCAAGCAAGAAACATTGAATG  400

seq1  GAGCTATAGTATCTTTAATAGACTGTATCTTTCCTCTTGATTAGTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATAGTATCTTTAATAGACTGTATCTTTCCTCTTGATTAGTATTTA  450

seq1  TTCATGATCACTGATGTAACTCTGTCATGCGCCTGAACTCTGAGAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATCACTGATGTAACTCTGTCATGCGCCTGAACTCTGAGAGGAAT  500

seq1  GATGAAAAGGTGGAACTGAGGAACGCAGCAAGCATGGAGATTCCTGGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAGGTGGAACTGAGGAACGCAGCAAGCATGGAGATTCCTGGCGT  550

seq1  TGCTGGTAGGTGCTCTGGGAGATGCTACAGAAGAAATGGACTGCCCGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAGGTGCTCTGGGAGATGCTACAGAAGAAATGGACTGCCCGTAA  600

seq1  ATACACACACCAGCCAAAGAGATTAGAGCTGTTTACGGTTGGCAATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACCAGCCAAAGAGATTAGAGCTGTTTACGGTTGGCAATAGCA  650

seq1  ATCTTCTCCCTGGTCTCACAGTTTCTGAAGCTGTAGCACTCTATGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCCCTGGTCTCACAGTTTCTGAAGCTGTAGCACTCTATGACTTC  700

seq1  CACAAAATTCACACAGTCCTTCACCTTCTAAAAGACACAAAAAAAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTCACACAGTCCTTCACCTTCTAAAAGACACAAAAAAAGAACT  750

seq1  TCAATGGAAAATGCTACACTTAAACCAGGAACCACAAAGAAAAGCCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAAAATGCTACACTTAAACCAGGAACCACAAAGAAAAGCCCAAG  800

seq1  AAACTAGTATCTAAAATGGGATTGTCTGATGGTAGGTCATGAGTTTCGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTATCTAAAATGGGATTGTCTGATGGTAGGTCATGAGTTTCGAT  850

seq1  ACCGTTGATGAGAAGTTCTTTCCAGGCATGCAATTTAGATGTTAAAATTG  900
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  ACCGTTGATGAGAAGTTCTTTCCAGGCATGC-ATTTAGATGTT-AAATTG  898

seq1  AATGATTTTCTTTTTCATCAGTTAGTGTGAGTTCCATTACATACAGCCCA  950
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  AATGATTTTC-TTTTCATCAGTTAGTGTGAG-TCCATTACATACAGCCCA  946

seq1  CCAGAGAGAGATGCTGTATGCTATGTTACTTAAGAGGGTGTGTGTG  996
      ||||||||||||||| ||||||||| ||||||  |||||| |||||
seq2  CCAGAGAGAGATGCTTTATGCTATG-TACTTAGAAGGGTG-GTGTG  990

seq1: chr17_76646505_76647641
seq2: B6Ng01-082B01.g_67_1186 (reverse)

seq1  TCATT-CAGAGATG-ATGCACCTAACCCTCAAGAGACTGGAGGCTGCAGG  48
      ||||| ||||||||  ||||||| | |||||||||||| |||||||||| 
seq2  TCATTACAGAGATGTGTGCACCTTA-CCTCAAGAGACT-GAGGCTGCAGA  48

seq1  GAGTTTAGAGGTCAGGTGGGGCGGGGGGTGGGGGTGGGGACA-GCCATGT  97
      |   ||||| |||| |||||   |||| |||||   |||||| ||||  |
seq2  G---TTAGA-GTCA-GTGGG--CGGGGATGGGG--TGGGACAGGCCA--T  87

seq1  GAAGACAGGGGCAGGAGGAGGAGGTATGGAA-TGTA-GAACAGACAGAG-  144
      | ||||| ||||| |||||| ||||| |||| |||| ||||||||  || 
seq2  GGAGACA-GGGCA-GAGGAGAAGGTAAGGAATTGTATGAACAGACCAAGA  135

seq1  GGTGGGCAGGGTAGGGGGGAATAAAATA-TGGAGTGAAATAAATAAATAA  193
      |||||||| ||||||||| | ||||||| ||| ||||||||||| |||||
seq2  GGTGGGCA-GGTAGGGGGAATTAAAATATTGGGGTGAAATAAAT-AATAA  183

seq1  ATAAATACATAAATAAATCCAAAAAAGGGAAAAGAAAACATGTCTTAGAG  243
       ||||  ||| |||||||||||||||||| |||||||||||||| |||||
seq2  TTAAAACCAT-AATAAATCCAAAAAAGGG-AAAGAAAACATGTC-TAGAG  230

seq1  ATAGCATACTGCCTTCATCTTTAGTACTAAGCATGAGTGAACAAAAACAT  293
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAGCATACTGCTTTCATCTTTAGTACTAAGCATGAGTGAACAAAAACAT  280

seq1  TCCTTTTACAAATTTAAATCATATTATGTTTTGGCGCAGACACTTCTTTT  343
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCC-TTTACAAATTTAAATCATATTATGTTTTGGCGCAGACACTTC-TTT  328

seq1  TTGTTGTTGTTGTTTTGAGACAGGGTTTCCCTGGCTGTCCTGGAACTCAC  393
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGT--GTTTGAGACAGGGTTTCCCTGGCTGTCCTGGAACTCAC  376

seq1  TGTGTAGACCAGGCTGGCCTTGAACTCAGAAAAACACCTGCCTCTGCCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGACCAGGCTGGCCTTGAACTCAGAAAAACACCTGCCTCTGCCTC  426

seq1  CCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCGGCACAGACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCGGCACAGACA  476

seq1  CTTCTTAAAGAAAACTGTAAATGTACCCAAATAAACTTTTGTTGATATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAAGAAAACTGTAAATGTACCCAAATAAACTTTTGTTGATATTC  526

seq1  CATGGCCCCCTTAGTATGGACAGAGGCTGTGACACTTGATTCATGTCACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCCCCTTAGTATGGACAGAGGCTGTGACACTTGATTCATGTCACT  576

seq1  CCTTGCTTTGCTCATTTCCCATGAGCCACACTGCTCTTTTTTTTTTTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTGCTCATTTCCCATGAGCCACACTGCTCTTTTTTTTTTTTTT  626

seq1  TTCTGAAACATGTCAAAAGATGCTGGAGTTGACAGTTTGTGCCTTGAAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACATGTCAAAAGATGCTGGAGTTGACAGTTTGTGCCTTGAAGC  676

seq1  TTCATGTACTTACTGCTTGGCAAGCTTTTTCTCAGCTCTATCTGGGCCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTACTTACTGCTTGGCAAGCTTTTTCTCAGCTCTATCTGGGCCTG  726

seq1  TTTAGCACAAATATGCCATTGTCAGGATTATCCAGGCTCCACTGTCAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCACAAATATGCCATTGTCAGGATTATCCAGGCTCCACTGTCAGAA  776

seq1  CCAAACCCTCCATATCCTTCCTTGTTAATCCTTAGTCTTTTCTCTTGCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCTCCATATCCTTCCTTGTTAATCCTTAGTCTTTTCTCTTGCTT  826

seq1  TAATTTATTTGTGGCACTTATCTGAACTCTAATGCATTGATTCTGTTGTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTTGTGGCACTTATCTGAACTCTAATGCATTGATTCTGTTGTC  876

seq1  AGTTCATTCATGCACTGTTGTCTTTTTGTTTCTAACTATTTGTAAGCCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCATGCACTGTTGTCTTTTTGTTTCTAACTATTTGTAAGCCAG  926

seq1  AAGAACAGGGATCTTGGTTATGCTTTTTCTCACCTTATCGTGGTTACCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGGATCTTGGTTATGCTTTTTCTCACCTTATCGTGGTTACCTT  976

seq1  AATCACTGTCTTGTACACTCACAGCTATAATGTGAGTGAGATGCCTAGGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGTCTTGTACACTCACAGCTATAATGTGAGTGAGATGCCTAGGC  1026

seq1  TTTTTCAACATCACTTCTCTCATGATATTTCTCTTCCTTTCTCATTAACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACATCACTTCTCTCATGATATTTCTCTTCCTTTCTCATTAACT  1076

seq1  CTTCATTTTTGATAACTTTTTATGTTTATGCATCAACTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTTGATAACTTTTTATGTTTATGCATCAACTGAATTC  1120