BAC Information

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BAC

Clone NameB6Ng01-082C13
Chromosome17 (Build37)11 (Build37)
Map Location 45,052,821 - 45,053,3429,917,637 - 9,918,716
singlet/doubletsingletsinglet
Overlap geneSupt3h
Upstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082C13.bB6Ng01-082C13.g
ACCDH896800DH896801
length9891,075
definitionDH896800|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C13, 5' end.DH896801|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,052,821 - 45,053,342)(9,917,637 - 9,918,716)
sequence
gaattccttttctggtccagtctatttggagttctggaggcttcttgtat
gttcatgggcatctctttgtttagatttgggaagttttcttttataattt
tgttgaagatatttgctggtcctttgagttgaaaatcttcattctcatct
actcctattatctgtacgtttggtcttctcattgtgtcctggatttcctg
gatgttttgagttaggatctttttgcattttgcattttctttgattgttg
tgctgatgatctctatggagtcttctgcacccaagattctctcttccatc
tcttgtattctgttgctgatgctcaaatctatggttccagatttctttcc
tagggtttctatctccagccttgcctcaatttgggttttctttattgtgt
ctacttctctttttaggtcttggatggtatttttcaattccatcacctgt
ttgttctcgttttcctgcaattctttaagggatttttgtgcttcctcttt
aatgccttctacctgtttagcagtgttctcctgtatttctttaagtgtgt
tattatagtccttcttgatgtcctctaccatcattatgagatatgctttt
agatccgggtctagcttttctggtgtgttagggtgccctggacgaagtgg
gaatgctgggttctgatgatggtgagtgttcttgttttctgttagtaaga
ttcttacgtttacctttcaccatctggaaatctctggagtagttgttata
gttgtctctgtttagagattgttcttctggtgattctgttagcctctatc
agcagacctgggagacaggctctctcctctgtgtttcagtggtcagagca
ctctctgcatgcaagctctcctctttcaggaaaggtgtacagatatcttg
tgtttggacctcctcctggccgaagatgaagcccaaaacaggacctttcc
cagaagctatgttgctttggcgggtcacagaagctttca
gaattcttttactagctctaggtgacacttgcaagaattgttacccccta
atcccttctgagtatttggactttttagtattggtattattgggcttgtg
gaattgctttttctgaggaagggcaggtctacattgatgactttgcaggt
tctgtccctgtgttcttgttgatgagagaaagctcactcgtctggggaat
tttgagcatggaagagacaatattgatgtgtccatttgttatcttccttc
tagaagcagaaagccagcaggcacctaaggggctaatttgaaaagctaca
ggccccaaaccagtttctcttcaaccagagcagggatggaaacttaaaca
cgaggctttttaaagcttctgtcaacatgatagagcagtgtgctgaagat
tcctgaggtaaggggagctaagaagtcacatggagacattttctgactca
gtagatttgctaggtcgggattttttcacgtgtgtgtacccaggagcctc
ctattcttgtttggcattctgcagctaaaatgtggcaaacaaacctaatt
tccaaaccacaccaacactggatagtgaaatagacaagtgaatcatgcaa
atagcatctttaatgttaacagataataatgaataaaattccagcaatca
gattaatacatgtataccttaaaatattttgctataatttctgtctgaac
agggaatgtcagagttactggctctgacattcttcaccatatcattgatg
aaccccaaagtggacacaccagagactttcaccaaagtggaagatttaaa
tcctgtagggtcaaaatgatgccatgagtggacaggtgctgtggtcatat
tctgggatgtttaatgtcattttaaaacagtgaaaattcataaagtccat
gtgagtccctgcagcacagacatatccagtggtaaccttgtattatctgc
tcttgtattacaagtttctctcagtgttcttttatgtgagattcatagta
tgcacatacacacatcagtgtgtgctagtttctaattaaattgatacctg
tgttgggggaaatgatgcctcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45052821_45053342
seq2: B6Ng01-082C13.b_50_571 (reverse)

seq1  TGCTAAACAGATAGAAGACCTTAAAGAGGAAGCACAAAAGTCCCTTAAAG  50
      |||||||||| |||||| | ||||||||||||||||||| ||||||||||
seq2  TGCTAAACAGGTAGAAGGCATTAAAGAGGAAGCACAAAAATCCCTTAAAG  50

seq1  AATTGCAGGAAAAAACGACCAAACAGGTGATGGAATTGAATAAAACCATC  100
      |||||||||||||   || ||||||||||||||||||||| || ||||||
seq2  AATTGCAGGAAAACGAGAACAAACAGGTGATGGAATTGAAAAATACCATC  100

seq1  CGAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGC  150
      | |||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  CAAGACCTAAAAAGAGAAGTAGACACAATAAAGAAAACCCAAATTGAGGC  150

seq1  AATGCTGGAGATAGAAACCCTAGGAAAGAAATGTGAAACCATAGATGCAG  200
      || ||||||||||||||||||||||||||||| || ||||||||||    
seq2  AAGGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGA  200

seq1  ACATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAA  250
       ||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTTGGGTGCAGAA  250

seq1  GATTCCATAGAGAACATGGGCACAACAATCAGAGAAAATGCAAAATGCAA  300
      || |||||||||| |||  |||||||||||| ||||||||||||||||||
seq2  GACTCCATAGAGATCATCAGCACAACAATCAAAGAAAATGCAAAATGCAA  300

seq1  AATGATACTAACTCAAAACATCCAGGAAATCCAGGACTCAATGAGAAGAC  350
      || ||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGAC  350

seq1  CAAACCTACGGATAATAGGAGTAGATGAGAATGAAGATTTTCAACTTAAA  400
      ||||| ||| |||||||||||||||||||||||||||||||||||| |||
seq2  CAAACGTACAGATAATAGGAGTAGATGAGAATGAAGATTTTCAACTCAAA  400

seq1  AGGCCAGCAAATATCTTCAACAAATTTATAGAAGAAAACTTCCTAAAACT  450
       | ||||||||||||||||||||| ||||| |||||||||||| ||| ||
seq2  GGACCAGCAAATATCTTCAACAAAATTATAAAAGAAAACTTCCCAAATCT  450

seq1  AAAGAAAGAGATGCCCATGAACATATAAGAAGCCTACAGAACTCCAAATA  500
      ||| ||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AAACAAAGAGATGCCCATGAACATACAAGAAGCCTCCAGAACTCCAAATA  500

seq1  GACTGGACCAGAAAAGAAATTC  522
      |||||||||||||||| |||||
seq2  GACTGGACCAGAAAAGGAATTC  522

seq1: chr11_9917637_9918716
seq2: B6Ng01-082C13.g_69_1143

seq1  GAATTCTTTCACTAGCTCTAGGTGACACTTGCAAGAATTGTTACCCCCTA  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTAGCTCTAGGTGACACTTGCAAGAATTGTTACCCCCTA  50

seq1  ATCCCTTCTGAGTATTTGGACTTTTTAGTATTGGTATTATTGGGCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTGAGTATTTGGACTTTTTAGTATTGGTATTATTGGGCTTGTG  100

seq1  GAATTGCTTTTTCTGAGGAAGGGCAGGTCTACATTGATGACTTTGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTTTTTCTGAGGAAGGGCAGGTCTACATTGATGACTTTGCAGGT  150

seq1  TCTGTCCCTGTGTTCTTGTTGATGAGAGAAAGCTCACTCGTCTGGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTGTGTTCTTGTTGATGAGAGAAAGCTCACTCGTCTGGGGAAT  200

seq1  TTTGAGCATGGAAGAGACAATATTGATGTGTCCATTTGTTATCTTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCATGGAAGAGACAATATTGATGTGTCCATTTGTTATCTTCCTTC  250

seq1  TAGAAGCAGAAAGCCAGCAGGCACCTAAGGGGCTAATTTGAAAAGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAGAAAGCCAGCAGGCACCTAAGGGGCTAATTTGAAAAGCTACA  300

seq1  GGCCCCAAACCAGTTTCTCTTCAACCAGAGCAGGGATGGAAACTTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAAACCAGTTTCTCTTCAACCAGAGCAGGGATGGAAACTTAAACA  350

seq1  CGAGGCTTTTTAAAGCTTCTGTCAACATGATAGAGCAGTGTGCTGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTTTTTAAAGCTTCTGTCAACATGATAGAGCAGTGTGCTGAAGAT  400

seq1  TCCTGAGGTAAGGGGAGCTAAGAAGTCACATGGAGACATTTTCTGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTAAGGGGAGCTAAGAAGTCACATGGAGACATTTTCTGACTCA  450

seq1  GTAGATTTGCTAGGTCGGGATTTTTTCACGTGTGTGTACCCAGGAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTGCTAGGTCGGGATTTTTTCACGTGTGTGTACCCAGGAGCCTC  500

seq1  CTATTCTTGTTTGGCATTCTGCAGCTAAAATGTGGCAAACAAACCTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTGTTTGGCATTCTGCAGCTAAAATGTGGCAAACAAACCTAATT  550

seq1  TCCAAACCACACCAACACTGGATAGTGAAATAGACAAGTGAATCATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCACACCAACACTGGATAGTGAAATAGACAAGTGAATCATGCAA  600

seq1  ATAGCATCTTTAATGTTAACAGATAATAATGAATAAAATTCCAGCAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCTTTAATGTTAACAGATAATAATGAATAAAATTCCAGCAATCA  650

seq1  GATTAATACATGTATACCTTAAAATATTTTGCTATAATTTCTGTCTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATACATGTATACCTTAAAATATTTTGCTATAATTTCTGTCTGAAC  700

seq1  AGGGAATGTCAGAGTTACTGGCTCTGACATTCTTCACCATATCATTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGTCAGAGTTACTGGCTCTGACATTCTTCACCATATCATTGATG  750

seq1  AACCCCAAAGTGGACACACCAGAGACTTTCACCAAAGTGGAAGAATTAAA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACCCCAAAGTGGACACACCAGAGACTTTCACCAAAGTGGAAGATTTAAA  800

seq1  TCCTGTAGGGTCAAAATGATGCCATGAGTGGACAGGTGCTGTGGTCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGGGTCAAAATGATGCCATGAGTGGACAGGTGCTGTGGTCATAT  850

seq1  TCTGGGATGTTTAATGTCAATTTAAAAACAGGTGAAAATTCAATAAAGTC  900
      |||||||||||||||||| |||| |||||| |||||||||| ||||||||
seq2  TCTGGGATGTTTAATGTC-ATTTTAAAACA-GTGAAAATTC-ATAAAGTC  897

seq1  CATGTGAGTCCCTGCAGCACAGACATATCCAGTGGTAACCTTGTATTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGTCCCTGCAGCACAGACATATCCAGTGGTAACCTTGTATTATC  947

seq1  TGCTCTTGTATTACAAGTTTCTTCTCAGTTGTTCTTTTTATGTGAGA-TC  999
      ||||||||||||||||||||| |||||| ||||| |||||||||||| ||
seq2  TGCTCTTGTATTACAAGTTTC-TCTCAG-TGTTC-TTTTATGTGAGATTC  994

seq1  ATAGTATGCACATACACACATCAGTGTGTGCTAGTTTCTAATTAAAATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAGTATGCACATACACACATCAGTGTGTGCTAGTTTCTAATT-AAATTG  1043

seq1  ATACCTGTGTT-GGGGAGATGATGGCTCAGCA  1080
      ||||||||||| ||||| |||||| |||||||
seq2  ATACCTGTGTTGGGGGAAATGATGCCTCAGCA  1075