BAC Information

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BAC

Clone NameB6Ng01-082E01
Chromosome17 (Build37)
Map Location 25,775,484 - 25,936,486
singlet/doubletdoublet
Overlap geneTmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn
Upstream geneNthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8
Downstream geneFbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082E01.bB6Ng01-082E01.g
ACCDH896863DH896864
length1,053506
definitionDH896863|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E01, 5' end.DH896864|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,935,435 - 25,936,486)(25,775,484 - 25,775,995)
sequence
gaattcattctcctattccaaaagagagagagataggacatggaaagaag
atatgatatgagaccaaagcaacatccaaacccggacgtcaagggtttac
gatagaatcatccgggcttcattctgttagaaataaatttgaggttgcaa
agaaagagacctccactctaactgaagtgtctcaagaaggcaaaccttta
ctgctgaccaaggagtgagctgctcacagcatggaagaggcaactcagac
agggattggtttttattctaactcaggtgatgactgtgtcttttccccat
tggctgggctcaacctcacggtctttagtgattggctaggtttgtttgtt
tgtttgtttgtctgtttgtattgagacagaatttctctgtgtaaagatcc
ctggctgtcctggaactcaccatgtagagctagtttgcctcgaactcaca
gcgatctgccttgcctgtgcctcaggagtgctgggattaaagttgtgtgc
caccttgctcagcccaagcttggttagttttaagagaatctgtgcaaaga
aaacgaaggggtaaaagataaaccattttaattcaagaatatagtagggc
ctttgtgtttggtatgggggtggattaaaacatttgcataaaagtctacc
aagctgagaaaataaaaaaaatttgaattccttgcttttatagcatccca
catttctatactatttgagagaaaaaagtcatatttaatgttatttattt
atttactattttacttatttatttatttcatatatatgagtatactgtca
ctgtcttcagacacaccagaagagggcatcagatcctattacagatggtt
gtgagccaccatgtggttgcttgggaattaaactcaggacctctggaaga
gcaatcagtgctcttaatcgctgagccatctctccagcccatatgtaatg
tttcttccaagaacagtcacacacactgtgtttactgattcatcagaaag
ttctggtcactctcaccttgttgtcattttgacttcctggaactggggca
agg
tcatcagagtgaagacaagcaggtataaggtctgcaggccactgttgtca
tagcagaggtgagggcagaaacgcccgactgcccctctgactctgggacc
ttggactttgtttggtggcacactttcccaggtggctctgggaattaggt
gacatagtacacactggaaggtgaagccaagctcggagtgtgtaattcca
tttcaaaatatgtgagaatttctgatacctttctcttactggtgtctcat
gtaattcctttactgcagagagaaggcttcgcatgcctcaggtctcttaa
gacttgtttttcaaaaatccgttttgtggtccaggatttgggtcattcta
agggggcattcctattgggcctgaagatgtgcgctgtgtgcaaggcagag
gtcaacaaggctgatgttggttggtagcgcttccagagccaggccctctg
tgttcttccttaatctctgtctgcttgtatgcagggaggcggggagggag
ggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25935435_25936486
seq2: B6Ng01-082E01.b_46_1098 (reverse)

seq1  CCTTGCCCCAG-TCCAGAGAGTCAAAATGAC-ACAAGGTGAGAGTGACCA  48
      ||||||||||| |||||  |||||||||||| ||||||||||||||||||
seq2  CCTTGCCCCAGTTCCAGGAAGTCAAAATGACAACAAGGTGAGAGTGACCA  50

seq1  GAACTTTCCTGATGAATCAGTAAACACAGTGTGGTGTGACTGTTCTTGGA  98
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GAACTTT-CTGATGAATCAGTAAACACAGTGT-GTGTGACTGTTCTTGGA  98

seq1  AGAAACATTACATATGGGCTGGAGAGATGGCTCAGCGATTAAGAGCACTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTACATATGGGCTGGAGAGATGGCTCAGCGATTAAGAGCACTG  148

seq1  ATTGCTCTTCCAGAGGTCCTGAGTTTAATTCCC-AGCAACCACATGGTGG  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTGCTCTTCCAGAGGTCCTGAGTTTAATTCCCAAGCAACCACATGGTGG  198

seq1  CTCACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAA  248

seq1  GACAGTGACAGTATACTCATATATATGAAATAAATAAATAAGTAAAATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGACAGTATACTCATATATATGAAATAAATAAATAAGTAAAATAG  298

seq1  TAAATAAATAAATAACATTAAATATGACTTTTTTCTCTCAAATAGTATAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAACATTAAATATGACTTTTTTCTCTCAAATAGTATAG  348

seq1  AAATGTGGGATGCTATAAAAGCAAGGAATTCAAATTTTTTTTATTTTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGGATGCTATAAAAGCAAGGAATTCAAATTTTTTTTATTTTCTC  398

seq1  AGCTTGGTAGACTTTTATGCAAATGTTTTAATCCACCCCCATACCAAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTAGACTTTTATGCAAATGTTTTAATCCACCCCCATACCAAACA  448

seq1  CAAAGGCCCTACTATATTCTTGAATTAAAATGGTTTATCTTTTACCCCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCCTACTATATTCTTGAATTAAAATGGTTTATCTTTTACCCCTT  498

seq1  CGTTTTCTTTGCACAGATTCTCTTAAAACTAACCAAGCTTGGGCTGAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCTTTGCACAGATTCTCTTAAAACTAACCAAGCTTGGGCTGAGCA  548

seq1  AGGTGGCACACAACTTTAATCCCAGCACTCCTGAGGCACAGGCAAGGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCACACAACTTTAATCCCAGCACTCCTGAGGCACAGGCAAGGCAG  598

seq1  ATCGCTGTGAGTTCGAGGCAAACTAGCTCTACATGGTGAGTTCCAGGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGTGAGTTCGAGGCAAACTAGCTCTACATGGTGAGTTCCAGGACA  648

seq1  GCCAGGGATCTTTACACAGAGAAATTCTGTCTCAATACAAACAGACAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATCTTTACACAGAGAAATTCTGTCTCAATACAAACAGACAAAC  698

seq1  AAACAAACAAACAAACCTAGCCAATCACTAAAGACCGTGAGGTTGAGCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACCTAGCCAATCACTAAAGACCGTGAGGTTGAGCCC  748

seq1  AGCCAATGGGGAAAAGACACAGTCATCACCTGAGTTAGAATAAAAACCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGGGGAAAAGACACAGTCATCACCTGAGTTAGAATAAAAACCAA  798

seq1  TCCCTGTCTGAGTTGCCTCTTCCATGCTGTGAGCAGCTCACTCCTTGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTGAGTTGCCTCTTCCATGCTGTGAGCAGCTCACTCCTTGGTC  848

seq1  AGCAGTAAAGGTTTGCCTTCTTGAGACACTTCAGTTAGAGTGGAGGTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAGGTTTGCCTTCTTGAGACACTTCAGTTAGAGTGGAGGTCTC  898

seq1  TTTCTTTGCAACCTCAAATTTATTTCTAACAGAATGAAGCCCGGATGATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCAACCTCAAATTTATTTCTAACAGAATGAAGCCCGGATGATT  948

seq1  CTATCGTAAACCCTTGACGTCCGGGTTTGGATGTTGCTTTGGTCTCATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTAAACCCTTGACGTCCGGGTTTGGATGTTGCTTTGGTCTCATAT  998

seq1  CATATCTTCTTTCCATGTCCTATCTCTCTCTCTTTTGGAATAGGAGAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCTTTCCATGTCCTATCTCTCTCTCTTTTGGAATAGGAGAATG  1048

seq1  AATTC  1052
      |||||
seq2  AATTC  1053

seq1: chr17_25775484_25775995
seq2: B6Ng01-082E01.g_67_578

seq1  GAATTCTCATCAGAGTGAAGACAAGCAGGTATAAGGTCTGCAGGCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAGAGTGAAGACAAGCAGGTATAAGGTCTGCAGGCCACTG  50

seq1  TTGTCATAGCAGAGGTGAGGGCAGAAACGCCCGACTGCCCCTCTGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAGCAGAGGTGAGGGCAGAAACGCCCGACTGCCCCTCTGACTCT  100

seq1  GGGACCTTGGACTTTGTTTGGTGGCACACTTTCCCAGGTGGCTCTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTTGGACTTTGTTTGGTGGCACACTTTCCCAGGTGGCTCTGGGAA  150

seq1  TTAGGTGACATAGTACACACTGGAAGGTGAAGCCAAGCTCGGAGTGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGACATAGTACACACTGGAAGGTGAAGCCAAGCTCGGAGTGTGTA  200

seq1  ATTCCATTTCAAAATATGTGAGAATTTCTGATACCTTTCTCTTACTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTCAAAATATGTGAGAATTTCTGATACCTTTCTCTTACTGGTG  250

seq1  TCTCATGTAATTCCTTTACTGCAGAGAGAAGGCTTCGCATGCCTCAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTAATTCCTTTACTGCAGAGAGAAGGCTTCGCATGCCTCAGGTC  300

seq1  TCTTAAGACTTGTTTTTCAAAAATCCGTTTTGTGGTCCAGGATTTGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGACTTGTTTTTCAAAAATCCGTTTTGTGGTCCAGGATTTGGGTC  350

seq1  ATTCTAAGGGGGCATTCCTATTGGGCCTGAAGATGTGCGCTGTGTGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGGGGGCATTCCTATTGGGCCTGAAGATGTGCGCTGTGTGCAAG  400

seq1  GCAGAGGTCAACAAGGCTGATGTTGGTTGGTAGCGCTTCCAGAGCCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTCAACAAGGCTGATGTTGGTTGGTAGCGCTTCCAGAGCCAGGC  450

seq1  CCTCTGTGTTCTTCCTTAATCTCTGTCTGCTTGTATGCAGGGAGGCGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTTCTTCCTTAATCTCTGTCTGCTTGTATGCAGGGAGGCGGGG  500

seq1  AGGGAGGGAGGG  512
      ||||||||||||
seq2  AGGGAGGGAGGG  512