BAC Information

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BAC

Clone NameB6Ng01-082F11
Chromosome17 (Build37)
Map Location 49,963,981 - 50,111,440
singlet/doubletdoublet
Overlap geneKif6, EG668470
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F11.bB6Ng01-082F11.g
ACCDH896922DH896923
length1,0731,178
definitionDH896922|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F11, 5' end.DH896923|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,963,981 - 49,965,067)(50,110,253 - 50,111,440)
sequence
gaattcactccaagtcccagcaatgccaacattgacccaggctgctttcc
aggctcagtgcccatgtctgtcctctgtcttctccagaagcacacatggg
tacttctcttggatgagaatcgttacaacataaaaaccagaaagggctca
gctgagttttctgtggttggccttcaggaccaccatatgagggtcttcac
aatgccttctggaaacttcccttcctgataatgctcagtgtccatttgct
tcgcctgctgagccttgctgtgctctccatggagaaagtaggaggagaat
gagccccaggagcagggaggatgaatcacacagggttactaaggaaaaaa
aagacaactggccttgagcacaccgaccccttaacctcacccagcccacc
agctctgcatcactgggccatgtgggatagccctgcatgtgggacttgct
gcctctaagagtcaggaacccatttgatttatttaaatgtggtgccacca
ttgggtgggtctcctaaagtttatgtggctttccacttcacattttcctt
ttgctctcctcccaagagcccttgccaagcctgctgtgcctcagcctggt
ccaagacagcaccgaggatcttctaattgcaggccgcccgccctctgtta
tctttcatgtggtggccctgggaaactgcaaggcgggtcctcatccgaga
accttagccaggtgaaagccatggttgggatgcagacctttgaccctcaa
agccttgggccactggcttattccagaagtcatcagtcaaaagcaggaag
ttatttaaataagcaacgttcttgacctggccaaagatcaactctgtgtc
atgacatctgcagccactttgggcgtggctaagtgggtttttgttgtatt
tttttcttccctctcctcagattgcttaggcccattgacgcacccagcaa
ccccttaattgtagctgagctatcatggccctttcaagcaaagatcatgg
caaatgatactgctttcacggggacctctacaccctggtagcgaaatgta
aggaagacatctcatttgcactg
gaattccagcctttcttaaacttcacaaaacagaagagaacaaatgattt
ggatttatcctaatgaatccactattactctgatagcagaaacacagaaa
ctgcaagaaattgtggacattgcatatccattcaaagaaagacacaaaaa
ttaaaaaacccacaagattagtgtaacactgagaaattgatcaatgtcat
atcactgagaattaaagacaaaaatctaatgactctagattttaaaaggg
atttgataaaatataacaaccactcacaatgaaaatgatcaagaaactag
ggataaagcctgtcgtctatctgacaagtgtgtctgcataagcccagagc
tagggtgagtgagaacgtctgggtgtgtctagtcctagtgaagttatgaa
caaatggcgctagatgtggagaggaggaagtcccacgtgcacaatctcgt
ataccgactcacgaaagtggtatttgaactaataaatccagaaaagcctg
caggacctgtacttttatgtttgcaacaacaacaacaaaaaaaaatccag
gagagagagagagagagagagagagagagagagagagagagagactctct
cctcctctttgcctctgctaccctcttaactccactccccatgccctgaa
taaattctattctatacaaaaaaaaaaaaaagtctgttgagcaaatgata
ccaaagaaactggccattttgctgagttccagcctcagcttgagagaggg
tcctaagaagggggtgtttgggagcagcagtagaattacttgcagtcagt
gatggatgcaagctgacagctctgtgatctgcttgagagatagctttctc
atgcagactaaagcccagtcatttatttgcataagctacttccttagaca
tgcctatcagtttaatcatttacctcaggttcccttttgactattccaca
aatcagcattttgtgacccttaactcttagaaatagaaactgaaatactg
agcactttccaggcatattatttttatttattattatcctattgaagtaa
tatattgcaaatattatttaaataacggcatttatgagcctcttgtttgt
gcggagcaggcacgattgagctcatttttattatgtctgaccattcaata
tttcctttagtccttggatcattctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49963981_49965067
seq2: B6Ng01-082F11.b_33_1105

seq1  GAATTCACTCCAAGTCCCAGCAATGCCAACA-GGACCCAGGCTGCTTTCC  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCACTCCAAGTCCCAGCAATGCCAACATTGACCCAGGCTGCTTTCC  50

seq1  AGGCTCAGTGCCCATGTCTGTCCTCTGTCTTCTCCAGAAGCACACATGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGTGCCCATGTCTGTCCTCTGTCTTCTCCAGAAGCACACATGGG  100

seq1  TACTTCTCTTGGATGAGAATCGTTACAACATAAAAACCAGAAAGGGCTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTTGGATGAGAATCGTTACAACATAAAAACCAGAAAGGGCTCA  150

seq1  GCTGAGTTTTCTGTGGTTGGCCTTCAGGACCACCATATGAGGGTCTTCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTTTCTGTGGTTGGCCTTCAGGACCACCATATGAGGGTCTTCAC  200

seq1  AATGCCTTCTGGAAACTTCCCTTCCTGATAATGCTCAGTGTCCATTTGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCTGGAAACTTCCCTTCCTGATAATGCTCAGTGTCCATTTGCT  250

seq1  TCGCCTGCTGAGCCTTGCTGTGCTCTCCATGGAGAAAGTAGGAGGAGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGCTGAGCCTTGCTGTGCTCTCCATGGAGAAAGTAGGAGGAGAAT  300

seq1  GAGCCCCAGGAGCAGGGAGGATGAATCACACAGGGTTACTAAGGAAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGGAGCAGGGAGGATGAATCACACAGGGTTACTAAGGAAAAAA  350

seq1  AAGACAACTGGCCTTGAGCACACCGACCCCTTAACCTCACCCAGCCCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACTGGCCTTGAGCACACCGACCCCTTAACCTCACCCAGCCCACC  400

seq1  AGCTCTGCATCACTGGGCCATGTGGGATAGCCCTGCATGTGGGACTTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCATCACTGGGCCATGTGGGATAGCCCTGCATGTGGGACTTGCT  450

seq1  GCCTCTAAGAGTCAGGAACCCATTTGATTTATTTAAATGTGGTGCCACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAAGAGTCAGGAACCCATTTGATTTATTTAAATGTGGTGCCACCA  500

seq1  TTGGGTGGGTCTCCTAAAGTTTATGTGGCTTTCCACTTCACATTTTCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGTCTCCTAAAGTTTATGTGGCTTTCCACTTCACATTTTCCTT  550

seq1  TTGCTCTCCTCCCAAGAGCCCTTGCCAAGCCTGCTGTGCCTCAGCCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCTCCCAAGAGCCCTTGCCAAGCCTGCTGTGCCTCAGCCTGGT  600

seq1  CCAAGACAGCACCGAGGATCTTCTAATTGCAGGCCGCCCGCCCTCTGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGCACCGAGGATCTTCTAATTGCAGGCCGCCCGCCCTCTGTTA  650

seq1  TCTTTCATGTGGTGGCCCTGGGAAACTGCAAGGCGGGTCCTCATCCGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGTGGTGGCCCTGGGAAACTGCAAGGCGGGTCCTCATCCGAGA  700

seq1  ACCTTAGCCAGGTGAAAGCCATGGTTGGGATGCAGACCTTTGACCCTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGCCAGGTGAAAGCCATGGTTGGGATGCAGACCTTTGACCCTCAA  750

seq1  AGCCTTGGGCCACTGGCTTATTCCAGAAGTCATCAGTCAAAAGCAGGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGGCCACTGGCTTATTCCAGAAGTCATCAGTCAAAAGCAGGAAG  800

seq1  TTATTTAAATAAGCAACGTTCTTGACCTGGCCAAAGATCCACTCTGTGTT  849
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TTATTTAAATAAGCAACGTTCTTGACCTGGCCAAAGATCAACTCTGTG-T  849

seq1  CATGACATCTGCAGCCACTTTGGCCGTGGCTAAGTGGTTTTTTGTTGTAT  899
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CATGACATCTGCAGCCACTTTGGGCGTGGCTAAGTGGGTTTTTGTTGTAT  899

seq1  TTTTTTCTTCCCCTCTTCCTCAGATTGCATAGCCCAATGGACGCACCCAG  949
      ||||||||| ||||| |||||||||||| ||| || || |||||||||||
seq2  TTTTTTCTT-CCCTC-TCCTCAGATTGCTTAGGCCCATTGACGCACCCAG  947

seq1  CAACCCCTTAAATTGTAGCTGAGCTAATCATGGCCCTTTCAAGCAAACAG  999
      ||||||||| ||||||||||||||| |||||||||||||||||||||   
seq2  CAACCCCTT-AATTGTAGCTGAGCT-ATCATGGCCCTTTCAAGCAAA---  992

seq1  AATCATGGCAAATGATACTGCTTTCTACGGTGACCTCTATCACCCTGGTA  1049
       |||||||||||||||||||||||| |||| |||||||| ||||||||||
seq2  GATCATGGCAAATGATACTGCTTTC-ACGGGGACCTCTA-CACCCTGGTA  1040

seq1  GCAGAAAATGTAGAGAAAGGACATCTCATTTTGCACTG  1087
      ||   |||||||  |||  ||||||||| |||||||||
seq2  GC--GAAATGTAAGGAA--GACATCTCA-TTTGCACTG  1073

seq1: chr17_50110253_50111440
seq2: B6Ng01-082F11.g_69_1246 (reverse)

seq1  AAAAGAAATGATCCAAAGATTAAAAGAATATATTGAAGTGGTTAAGAATA  50
      ||||| |||||||||| || |||| ||| |||||||| |||| |   |||
seq2  AAAAG-AATGATCCAAGGACTAAAGGAA-ATATTGAA-TGGTCAGACATA  47

seq1  ATAAAAATGAGCTTCAATGCTGCTTGCATCAGCACAAACAAGA-GCTCAT  99
      |||||||||||| |||||  ||| ||| || |||||||||||| ||||||
seq2  ATAAAAATGAGC-TCAATCGTGCCTGC-TCCGCACAAACAAGAGGCTCAT  95

seq1  AAAATTGCAGTATATATAAATATATA-TTGCAATATATATACTACTATAT  148
      |||  ||| || ||| |||||| ||| ||||||||||| |||| | ||| 
seq2  AAA--TGCCGT-TATTTAAATA-ATATTTGCAATATAT-TACTTCAATA-  139

seq1  GTATATATATATATATATATATATATGCCTTGAAAGTGCTCAGTATTTCA  198
      | |||   ||| ||| | ||| |||||||| |||||||||||||||||||
seq2  GGATAATAATAAATAAAAATA-ATATGCCTGGAAAGTGCTCAGTATTTCA  188

seq1  GTTTCTATTTCTAAGAGTTAAGGGTCACAAAATGCTGATTTGTGGAATAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTTCTAAGAGTTAAGGGTCACAAAATGCTGATTTGTGGAATAG  238

seq1  TCAAAAGGGAACCTGAGGTAAATGATTAAACTGATAGGCAATGTCTAAGG  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAAAAGGGAACCTGAGGTAAATGATTAAACTGATAGGC-ATGTCTAAGG  287

seq1  AAGTAGCTTATGCAAATAAATGACTGGGCTTTAGTCTGCATGAGAAAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTTATGCAAATAAATGACTGGGCTTTAGTCTGCATGAGAAAGCT  337

seq1  ATCTCTCAAGCAGATCACAGAGCTGTCAGCTTGCATCCATCACTGACTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCAAGCAGATCACAGAGCTGTCAGCTTGCATCCATCACTGACTGC  387

seq1  AAGTAATTCTACTGCTGCTCCCAAACACCCCCTTCTTAGGACCCTCTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTCTACTGCTGCTCCCAAACACCCCCTTCTTAGGACCCTCTCTC  437

seq1  AAGCTGAGGCTGGAACTCAGC-AAATGGCCAGTTTCTTTGGTATCATTTG  497
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGCTGAGGCTGGAACTCAGCAAAATGGCCAGTTTCTTTGGTATCATTTG  487

seq1  CTCAACAGACTTTTTTTTTTTTTTGTATAGAATAGAATTTATTCAGGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGACTTTTTTTTTTTTTTGTATAGAATAGAATTTATTCAGGGCA  537

seq1  TGGGGAGTGGAGTTAAGAGGGTAGCAGAGGCAAAGAGGAGGAGAGAGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTGGAGTTAAGAGGGTAGCAGAGGCAAAGAGGAGGAGAGAGTCT  587

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGATTTT  637

seq1  TTTTTGTTGTTGTTGTTGCAAACATAAAAGTACAGGTCCTGCAGGCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTGTTGTTGCAAACATAAAAGTACAGGTCCTGCAGGCTTTT  687

seq1  CTGGATTTATTAGTTCAAATACCACTTTCGTGAGTCGGTATACGAGATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTATTAGTTCAAATACCACTTTCGTGAGTCGGTATACGAGATTG  737

seq1  TGCACGTGGGACTTCCTCCTCTCCACATCTAGCGCCATTTGTTCATAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGGGACTTCCTCCTCTCCACATCTAGCGCCATTTGTTCATAACT  787

seq1  TCACTAGGACTAGACACACCCAGACGTTCTCACTCACCCTAGCTCTGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGACTAGACACACCCAGACGTTCTCACTCACCCTAGCTCTGGGC  837

seq1  TTATGCAGACACACTTGTCAGATAGACGACAGGCTTTATCCCTAGTTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGACACACTTGTCAGATAGACGACAGGCTTTATCCCTAGTTTCT  887

seq1  TGATCATTTTCATTGTGAGTGGTTGTTATATTTTATCAAATCCCTTTTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTTCATTGTGAGTGGTTGTTATATTTTATCAAATCCCTTTTAA  937

seq1  AATCTAGAGTCATTAGATTTTTGTCTTTAATTCTCAGTGATATGACATTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAGTCATTAGATTTTTGTCTTTAATTCTCAGTGATATGACATTG  987

seq1  ATCAATTTCTCAGTGTTACACTAATCTTGTGGGTTTTTTAATTTTTGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCTCAGTGTTACACTAATCTTGTGGGTTTTTTAATTTTTGTGT  1037

seq1  CTTTCTTTGAATGGATATGCAATGTCCACAATTTCTTGCAGTTTCTGTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGAATGGATATGCAATGTCCACAATTTCTTGCAGTTTCTGTGT  1087

seq1  TTCTGCTATCAGAGTAATAGTGGATTCATTAGGATAAATCCAAATCATTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTATCAGAGTAATAGTGGATTCATTAGGATAAATCCAAATCATTT  1137

seq1  GTTCTCTTCTGTTTTGTGAAGTTTAAGAAAGGCTGGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTCTGTTTTGTGAAGTTTAAGAAAGGCTGGAATTC  1178