BAC Information

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BAC

Clone NameB6Ng01-082H03
Chromosome17 (Build37)
Map Location 49,963,981 - 50,111,440
singlet/doubletdoublet
Overlap geneKif6, EG668470
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082H03.bB6Ng01-082H03.g
ACCDH896997DH896998
length1,1521,004
definitionDH896997|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H03, 5' end.DH896998|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,963,981 - 49,965,137)(50,110,434 - 50,111,440)
sequence
gaattcactccaagtcccagcaatgccaacaggacccaggctgctttcca
ggctcagtgcccatgtctgtcctctgtcttctccagaagcacacatgggt
acttctcttggatgagaatcgttacaacataaaaaccagaaagggctcag
ctgagttttctgtggttggccttcaggaccaccatatgagggtcttcaca
atgccttctggaaacttcccttcctgataatgctcagtgtccatttgctt
cgcctgctgagccttgctgtgctctccatggagaaagtaggaggagaatg
agccccaggagcagggaggatgaatcacacagggttactaaggaaaaaaa
agacaactggccttgagcacaccgaccccttaacctcacccagcccacca
gctctgcatcactgggccatgtgggatagccctgcatgtgggacttgctg
cctctaagagtcaggaacccatttgatttatttaaatgtggtgccaccat
tgggtgggtctcctaaagtttatgtggctttccacttcacattttccttt
tgctctcctcccaagagcccttgccaagcctgctgtgcctcagcctggtc
caagacagcaccgaggatcttctaattgcaggccgcccgccctctgttat
ctttcatgtggtggccctgggaaactgcaaggcgggtcctcatccgagaa
ccttagccaggtgaaagccatggttgggatgcagacctttgaccctcaaa
gccttgggccactggcttattccagaagtcatcagtcaaaagcaggaagt
tatttaaataagcaacgttcttgacctggccaaagatccactctgtgttc
atgacatctgcagccactttggccgtggctaagtggttttttgttgtatt
tttttcttcccctcttcctcagattgcatagcccaatggacgcacccagc
aaccccttaaattgtagctgagctaatcatggccctttcagcaaacagaa
tcatggcaatgatactgctttctacggtgacctctatcaccctggtagca
gaaaatgtaagagaaaggacatctcattttgcactgacaatctttctcag
gactgggagctccaaagcaaggatacactgtgaggagcagggtgtggcgg
gg
gaattccagcctttcttaaacttcacaaaacagaagagaacaaatgattt
ggatttatcctaatgaatccactattactctgatagcagaaacacagaaa
ctgcaagaaattgtggacattgcatatccattcaaagaaagacacaaaaa
ttaaaaaacccacaagattagtgtaacactgagaaattgatcaatgtcat
atcactgagaattaaagacaaaaatctaatgactctagattttaaaaggg
atttgataaaatataacaaccactcacaatgaaaatgatcaagaaactag
ggataaagcctgtcgtctatctgacaagtgtgtctgcataagcccagagc
tagggtgagtgagaacgtctgggtgtgtctagtcctagtgaagttatgaa
caaatggcgctagatgtggagaggaggaagtcccacgtgcacaatctcgt
ataccgactcacgaaagtggtatttgaactaataaatccagaaaagcctg
caggacctgtacttttatgtttgcaacaacaacaacaaaaaaaaatccag
gagagagagagagagagagagagagagagagagagagagagagactctct
cctcctctttgcctctgctaccctcttaactccactccccatgccctgaa
taaattctattctatacaaaaaaaaaaaaaagtctgttgagcaaatgata
ccaaagaaactggccatttgctgagttccagcctcagcttgagagagggt
cctaagaagggggtgtttgggagcagcagtagaattacttgcagtcagtg
atggatgcaagctgacagctctgtgatctgcttgagagatagctttctca
tgcagactaaagcccagtcatttatttgcataagctacttccttagacat
tgcctatcagtttaatcatttacctcaggttcccttttgactattccaca
aatcagcattttgtgacccttactcttagaatagaactgaaatactgagc
actt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49963981_49965137
seq2: B6Ng01-082H03.b_49_1200

seq1  GAATTCACTCCAAGTCCCAGCAATGCCAACAGGACCCAGGCTGCTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAAGTCCCAGCAATGCCAACAGGACCCAGGCTGCTTTCCA  50

seq1  GGCTCAGTGCCCATGTCTGTCCTCTGTCTTCTCCAGAAGCACACATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGCCCATGTCTGTCCTCTGTCTTCTCCAGAAGCACACATGGGT  100

seq1  ACTTCTCTTGGATGAGAATCGTTACAACATAAAAACCAGAAAGGGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTTGGATGAGAATCGTTACAACATAAAAACCAGAAAGGGCTCAG  150

seq1  CTGAGTTTTCTGTGGTTGGCCTTCAGGACCACCATATGAGGGTCTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTTCTGTGGTTGGCCTTCAGGACCACCATATGAGGGTCTTCACA  200

seq1  ATGCCTTCTGGAAACTTCCCTTCCTGATAATGCTCAGTGTCCATTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTGGAAACTTCCCTTCCTGATAATGCTCAGTGTCCATTTGCTT  250

seq1  CGCCTGCTGAGCCTTGCTGTGCTCTCCATGGAGAAAGTAGGAGGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCTGAGCCTTGCTGTGCTCTCCATGGAGAAAGTAGGAGGAGAATG  300

seq1  AGCCCCAGGAGCAGGGAGGATGAATCACACAGGGTTACTAAGGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGGAGCAGGGAGGATGAATCACACAGGGTTACTAAGGAAAAAAA  350

seq1  AGACAACTGGCCTTGAGCACACCGACCCCTTAACCTCACCCAGCCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTGGCCTTGAGCACACCGACCCCTTAACCTCACCCAGCCCACCA  400

seq1  GCTCTGCATCACTGGGCCATGTGGGATAGCCCTGCATGTGGGACTTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCATCACTGGGCCATGTGGGATAGCCCTGCATGTGGGACTTGCTG  450

seq1  CCTCTAAGAGTCAGGAACCCATTTGATTTATTTAAATGTGGTGCCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGAGTCAGGAACCCATTTGATTTATTTAAATGTGGTGCCACCAT  500

seq1  TGGGTGGGTCTCCTAAAGTTTATGTGGCTTTCCACTTCACATTTTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTCTCCTAAAGTTTATGTGGCTTTCCACTTCACATTTTCCTTT  550

seq1  TGCTCTCCTCCCAAGAGCCCTTGCCAAGCCTGCTGTGCCTCAGCCTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTCCCAAGAGCCCTTGCCAAGCCTGCTGTGCCTCAGCCTGGTC  600

seq1  CAAGACAGCACCGAGGATCTTCTAATTGCAGGCCGCCCGCCCTCTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCACCGAGGATCTTCTAATTGCAGGCCGCCCGCCCTCTGTTAT  650

seq1  CTTTCATGTGGTGGCCCTGGGAAACTGCAAGGCGGGTCCTCATCCGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTGGTGGCCCTGGGAAACTGCAAGGCGGGTCCTCATCCGAGAA  700

seq1  CCTTAGCCAGGTGAAAGCCATGGTTGGGATGCAGACCTTTGACCCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCAGGTGAAAGCCATGGTTGGGATGCAGACCTTTGACCCTCAAA  750

seq1  GCCTTGGGCCACTGGCTTATTCCAGAAGTCATCAGTCAAAAGCAGGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGCCACTGGCTTATTCCAGAAGTCATCAGTCAAAAGCAGGAAGT  800

seq1  TATTTAAATAAGCAACGTTCTTGACCTGGCCAAAGATCCACTCTGTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATAAGCAACGTTCTTGACCTGGCCAAAGATCCACTCTGTGTTC  850

seq1  ATGACATCTGCAGCCACTTTGGCCGTGGCTAAGTGGTTTTTTGTTGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCTGCAGCCACTTTGGCCGTGGCTAAGTGGTTTTTTGTTGTATT  900

seq1  TTTTTCTTCCCCTCTTCCTCAGATTGCATAGCCCAATGGACGCACCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCCCTCTTCCTCAGATTGCATAGCCCAATGGACGCACCCAGC  950

seq1  AACCCCTTAAATTGTAGCTGAGCTAATCATGGCCCTTTCAAGCAAACAGA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACCCCTTAAATTGTAGCTGAGCTAATCATGGCCCTTTC-AGCAAACAGA  999

seq1  ATCATGGCAAATGATACTGCTTTCTACGGTGACCTCTATCACCCTGGTAG  1050
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGC-AATGATACTGCTTTCTACGGTGACCTCTATCACCCTGGTAG  1048

seq1  CAGAAAATGT-AGAGAAAGGACATCTCATTTTGCACTGACAATC-TTCTC  1098
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CAGAAAATGTAAGAGAAAGGACATCTCATTTTGCACTGACAATCTTTCTC  1098

seq1  AAGGACT-GGAGCTCCCAAAGGCAAGGATACCACTGTGAGGAGGCAGGGG  1147
       |||||| ||||||||  || ||||||||| ||||||||||| ||| |||
seq2  -AGGACTGGGAGCTCC--AAAGCAAGGATA-CACTGTGAGGA-GCA-GGG  1142

seq1  TGTGGCGGGG  1157
      ||||||||||
seq2  TGTGGCGGGG  1152

seq1: chr17_50110434_50111440
seq2: B6Ng01-082H03.g_70_1073 (reverse)

seq1  AAGTGCTCAGTATTTCAGTTTCTATTTCTAAGAGTTAAGGGTCACAAAAT  50
      |||||||||||||||||| ||||| ||||||||| |||||||||||||||
seq2  AAGTGCTCAGTATTTCAG-TTCTA-TTCTAAGAG-TAAGGGTCACAAAAT  47

seq1  GCTGATTTGTGGAATAGTCAAAAGGGAACCTGAGGTAAATGATTAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTGTGGAATAGTCAAAAGGGAACCTGAGGTAAATGATTAAACTG  97

seq1  ATAGGCAATGTCTAAGGAAGTAGCTTATGCAAATAAATGACTGGGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAATGTCTAAGGAAGTAGCTTATGCAAATAAATGACTGGGCTTTA  147

seq1  GTCTGCATGAGAAAGCTATCTCTCAAGCAGATCACAGAGCTGTCAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATGAGAAAGCTATCTCTCAAGCAGATCACAGAGCTGTCAGCTTG  197

seq1  CATCCATCACTGACTGCAAGTAATTCTACTGCTGCTCCCAAACACCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCACTGACTGCAAGTAATTCTACTGCTGCTCCCAAACACCCCCT  247

seq1  TCTTAGGACCCTCTCTCAAGCTGAGGCTGGAACTCAGCAAATGGCCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGACCCTCTCTCAAGCTGAGGCTGGAACTCAGCAAATGGCCAGTT  297

seq1  TCTTTGGTATCATTTGCTCAACAGACTTTTTTTTTTTTTTGTATAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTATCATTTGCTCAACAGACTTTTTTTTTTTTTTGTATAGAATA  347

seq1  GAATTTATTCAGGGCATGGGGAGTGGAGTTAAGAGGGTAGCAGAGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTCAGGGCATGGGGAGTGGAGTTAAGAGGGTAGCAGAGGCAAA  397

seq1  GAGGAGGAGAGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGAGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  447

seq1  CTCTCTCCTGGATTTTTTTTTGTTGTTGTTGTTGCAAACATAAAAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTGGATTTTTTTTTGTTGTTGTTGTTGCAAACATAAAAGTACA  497

seq1  GGTCCTGCAGGCTTTTCTGGATTTATTAGTTCAAATACCACTTTCGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGCAGGCTTTTCTGGATTTATTAGTTCAAATACCACTTTCGTGAG  547

seq1  TCGGTATACGAGATTGTGCACGTGGGACTTCCTCCTCTCCACATCTAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTATACGAGATTGTGCACGTGGGACTTCCTCCTCTCCACATCTAGCG  597

seq1  CCATTTGTTCATAACTTCACTAGGACTAGACACACCCAGACGTTCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTTCATAACTTCACTAGGACTAGACACACCCAGACGTTCTCACT  647

seq1  CACCCTAGCTCTGGGCTTATGCAGACACACTTGTCAGATAGACGACAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGCTCTGGGCTTATGCAGACACACTTGTCAGATAGACGACAGGC  697

seq1  TTTATCCCTAGTTTCTTGATCATTTTCATTGTGAGTGGTTGTTATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCTAGTTTCTTGATCATTTTCATTGTGAGTGGTTGTTATATTTT  747

seq1  ATCAAATCCCTTTTAAAATCTAGAGTCATTAGATTTTTGTCTTTAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCCCTTTTAAAATCTAGAGTCATTAGATTTTTGTCTTTAATTCT  797

seq1  CAGTGATATGACATTGATCAATTTCTCAGTGTTACACTAATCTTGTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATATGACATTGATCAATTTCTCAGTGTTACACTAATCTTGTGGGT  847

seq1  TTTTTAATTTTTGTGTCTTTCTTTGAATGGATATGCAATGTCCACAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTTGTGTCTTTCTTTGAATGGATATGCAATGTCCACAATTT  897

seq1  CTTGCAGTTTCTGTGTTTCTGCTATCAGAGTAATAGTGGATTCATTAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTTTCTGTGTTTCTGCTATCAGAGTAATAGTGGATTCATTAGGA  947

seq1  TAAATCCAAATCATTTGTTCTCTTCTGTTTTGTGAAGTTTAAGAAAGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCAAATCATTTGTTCTCTTCTGTTTTGTGAAGTTTAAGAAAGGCT  997

seq1  GGAATTC  1007
      |||||||
seq2  GGAATTC  1004