BAC Information

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BAC

Clone NameB6Ng01-082J02
Chromosome17 (Build37)
Map Location 53,648,991 - 53,815,994
singlet/doubletdoublet
Overlap gene4921523A10Rik, Pcaf, EG628822, Sgol1
Upstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a
Downstream geneEG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J02.bB6Ng01-082J02.g
ACCDH897086DH897087
length1,0601,152
definitionDH897086|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J02, 5' end.DH897087|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,648,991 - 53,650,053)(53,814,845 - 53,815,994)
sequence
gaattcatgttggggaaataggcagccacattaaactcttgacagttgtt
aactgaagtcttcagtaagagatggcagtatggtatgaccatagttgaga
taaacctgggatatttgcaacattttgcttcattaatgtcctgaagtcta
aatctggtccagacagattaaaagatgctgttagaaggggtttggatttt
ttttgtttgttttccccaagattttagaatcatcatatgtttaagaacaa
gcagtagtttttggtacagcattgtgattcacagcatatctcaggtggca
ttggtatctgaatactctgcccctgaaaattaaaattcctactttaatat
gccagttctaaaagcaaaatttggtgggggcagtgagatggttcagtgtg
aagagacacttgatgacctgtttgagctagaccccatatggtggaaggag
agaacctgatccccaaagctgcccttgacttcaacatgcatgctgtggca
tacatgcacgtgtaccacacactttaaaataagaatattctgtcaggtgg
gggtggtgtgccagcactcaagaagcagagacctgtgagttccaggacag
tcaggctacacacagtgaaccctgtctacaatcaaagaatatttaggcct
ctaacagtgctatacttggaatcagaattttgttgctaatgtgttcaatt
ctgtttcttcaactttttaacttatttttgtttttcttttgattaatttt
gaaatagagtttcaatatgtagcccatgctgacctaaacttgagatcttc
cctgtgtctgcctcatttcagaaaaactttttgatttgtttagcaaataa
gaatctaggctttaaaaggctgaagtctgtccaactggtatgatttgaca
gaaagcctaacctgatgtgagataacagtagtcttgcctcattaacataa
tagatgaatgctaattgaggtcctgggttgcttgcaaaatgtgaactggt
gctatgcaaatatgctccgcaatctggcaaatttctaatttcattctctt
tatatctaac
gaattctcctattttcaagcagaaaaggggtatgagatgtcctaaaagaa
gaaccaagcaaacacagtaactcatttgattagctactgtttaaggtgat
ccttcttttttacctaataaaatattattagacagtgcacaatgggcaga
acctctaccaggctctgatcaggagggtctcttggacatatactttgtat
ggactattatattaccaacatctaaaacttctccagcatccttatttttt
ccttaagcaggagaattgcagagtacaaaacttgcatcgtagaaaactta
cataggatgtagatctttcataaatccttaccatcacagtaagacataag
tgggtgaggatcccttctgtcattgattctttctgtaaactgtgtatcga
atggtgattaagagaattaatgaattgggttctggaacaaggtaactgtt
gtgaactgtgagtactatgctattgctcagcagaataatagcactgtcgt
ggacctcaggctagccctttgtgtggtcagtctacagtgtaaataaaggt
gtgaataaaggggcttctggctttgatatgtgaacaaaataaaagtatcc
agtttcagaacattgaatctttatgtgtgtatgtatgtcttcaaacttaa
atcgttgtaactggtccattgttaaaggtgaagcctatggtgaccgcatt
gtgttttccttttgctcttaatggtcagttactcttgattatcttccttt
ctggcctttaccactcccaacttagctggaacctcttctgtcttccctgg
ttccccttttcttcccattagattttgtcctgtcagtttcccaactgaag
cctccagggccaacatcaaggcatttcaattttcattaaatcggaagacg
tttgtctcctatgggccatgcccagggatagataataccactccaacagg
agattttaagcttatagaagggccttctgggtgtctcctccgatttaacc
caccaactgcatggcttccttacatttaccatcaaactgaagtgtcctct
gtcacctcacgtgcaccccctcttcgcccataccaagccttacatttagc
actgttacagctctctgaaggaatggacccacaactctgggtgtgggtag
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53648991_53650053
seq2: B6Ng01-082J02.b_45_1104

seq1  GAATTCATGTTGGGGAAATAGGCAGCCACATTAAACTCTTGACAGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGGGGAAATAGGCAGCCACATTAAACTCTTGACAGTTGTT  50

seq1  AACTGAAGTCTTCAGTAAGAGATGGCAGTATGGTATGACCATAGTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGTCTTCAGTAAGAGATGGCAGTATGGTATGACCATAGTTGAGA  100

seq1  TAAACCTGGGATATTTGCAACATTTTGCTTCATTAATGTCCTGAAGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGGGATATTTGCAACATTTTGCTTCATTAATGTCCTGAAGTCTA  150

seq1  AATCTGGTCCAGACAGATTAAAAGATGCTGTTAGAAGGGGTTTGGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTCCAGACAGATTAAAAGATGCTGTTAGAAGGGGTTTGGATTTT  200

seq1  TTTTGTTTGTTTTCCCCAAGATTTTAGAATCATCATATGTTTAAGAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTTCCCCAAGATTTTAGAATCATCATATGTTTAAGAACAA  250

seq1  GCAGTAGTTTTTGGTACAGCATTGTGATTCACAGCATATCTCAGGTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTTTTTGGTACAGCATTGTGATTCACAGCATATCTCAGGTGGCA  300

seq1  TTGGTATCTGAATACTCTGCCCCTGAAAATTAAAATTCCTACTTTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATCTGAATACTCTGCCCCTGAAAATTAAAATTCCTACTTTAATAT  350

seq1  GCCAGTTCTAAAAGCAAAATTTGGTGGGGGCAGTGAGATGGTTCAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCTAAAAGCAAAATTTGGTGGGGGCAGTGAGATGGTTCAGTGTG  400

seq1  AAGAGACACTTGATGACCTGTTTGAGCTAGACCCCATATGGTGGAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACTTGATGACCTGTTTGAGCTAGACCCCATATGGTGGAAGGAG  450

seq1  AGAACCTGATCCCCAAAGCTGCCCTTGACTTCAACATGCATGCTGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGATCCCCAAAGCTGCCCTTGACTTCAACATGCATGCTGTGGCA  500

seq1  TACATGCACGTGTACCACACACTTTAAAATAAGAATATTCTGTCAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCACGTGTACCACACACTTTAAAATAAGAATATTCTGTCAGGTGG  550

seq1  GGGTGGTGTGCCAGCACTCAAGAAGCAGAGACCTGTGAGTTCCAGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGTGCCAGCACTCAAGAAGCAGAGACCTGTGAGTTCCAGGACAG  600

seq1  TCAGGCTACACACAGTGAACCCTGTCTACAATCAAAGAATATTTAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTACACACAGTGAACCCTGTCTACAATCAAAGAATATTTAGGCCT  650

seq1  CTAACAGTGCTATACTTGGAATCAGAATTTTGTTGCTAATGTGTTCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTGCTATACTTGGAATCAGAATTTTGTTGCTAATGTGTTCAATT  700

seq1  CTGTTTCTTCAAC-TTTTAACTTATTTTTGTTTTTCTTTTGATTAATTTT  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTCAACTTTTTAACTTATTTTTGTTTTTCTTTTGATTAATTTT  750

seq1  GAAATAGAGTTTCAATATGTAGCCCATGCTGACCTAAACTTGAGATCTT-  798
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAATAGAGTTTCAATATGTAGCCCATGCTGACCTAAACTTGAGATCTTC  800

seq1  CCTGTGTCTGCCTCATTTCAGAAAAACTTTTTGATTTGTTTAGCAAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCTGCCTCATTTCAGAAAAACTTTTTGATTTGTTTAGCAAATAA  850

seq1  GAATCTAGGC-TTAAAAGGCTGAAGTCTGTCCAACTGGTATGATTTGACA  897
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGGCTTTAAAAGGCTGAAGTCTGTCCAACTGGTATGATTTGACA  900

seq1  GAAAGCCTAACCTGATGTGAGATAAACAGTAGTCTTGCCTCATTAACATA  947
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAGCCTAACCTGATGTGAGAT-AACAGTAGTCTTGCCTCATTAACATA  949

seq1  ATAGAATGAATGCTAATTGAGGTCCTGGGTTGCTTGCAAAATGTGACCCT  997
      |||| ||||||||||||||||||||||||||||||||||||||||| |  
seq2  ATAG-ATGAATGCTAATTGAGGTCCTGGGTTGCTTGCAAAATGTGAACTG  998

seq1  GTGCTATGCAAATTATGCTCCCGCAGTCTGCACAAATTTCTATTTTCATT  1047
      |||||||||||| |||||| ||||| ||||  |||||||||| |||||||
seq2  GTGCTATGCAAA-TATGCT-CCGCAATCTG-GCAAATTTCTAATTTCATT  1045

seq1  CTTCTTTTATCCTAAC  1063
      ||  || ||| |||||
seq2  CTCTTTATAT-CTAAC  1060

seq1: chr17_53814845_53815994
seq2: B6Ng01-082J02.g_70_1221 (reverse)

seq1  TCCTA-CCACACACAGAGTTGTGGGTCCAATCCT---CAGAGCTGTAAAC  46
      ||||| |||||| |||||||||||||||| ||||    |||||||| |||
seq2  TCCTACCCACACCCAGAGTTGTGGGTCCATTCCTTCAGAGAGCTGT-AAC  49

seq1  AGTGGCTAAAAATGTAAGGC-TGTGATGGGCG-AGA-GGGGTGCACGTGA  93
      ||| |||  ||||||||||| ||  ||||||| ||| |||||||||||||
seq2  AGT-GCT--AAATGTAAGGCTTGGTATGGGCGAAGAGGGGGTGCACGTGA  96

seq1  -GTGACAGAGCCACACTTTCAGTTTGATGGTAAATGT-AGGAAGCCATGC  141
       |||||||||  |||| |||||||||||||||||||| ||||||||||||
seq2  GGTGACAGAG-GACAC-TTCAGTTTGATGGTAAATGTAAGGAAGCCATGC  144

seq1  AGTT-GTGGGTAAAATCTGAGATGACCACCAGAAGGCCCTTCTGATAGCT  190
      |||| |||||| ||||| |||  |||  |||||||||||||||   ||||
seq2  AGTTGGTGGGTTAAATCGGAGGAGACACCCAGAAGGCCCTTCTATAAGCT  194

seq1  TAAAATCTCCTGTTTGAGTGGTATTTATCTATCCCTGGGCCTTGCCCATA  240
      |||||||||||||| |||||||| |||||||||||||||| | |||||||
seq2  TAAAATCTCCTGTTGGAGTGGTA-TTATCTATCCCTGGGCATGGCCCATA  243

seq1  GGAGACAAACGTTCTTCCGATTTAATGAAAATTGAAATGCCTTGATGTTG  290
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAACG-TCTTCCGATTTAATGAAAATTGAAATGCCTTGATGTTG  292

seq1  GCCCTGGAGGCTTCAGTTGGGAAAACTTGACAGGAC-AAATCTAATGGGA  339
      ||||||||||||||||||||||||   ||||||||| |||||||||||||
seq2  GCCCTGGAGGCTTCAGTTGGGAAA--CTGACAGGACAAAATCTAATGGGA  340

seq1  AGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGTTGGGAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGTTGGGAGT  390

seq1  GGTAAAGGCCAGAAAGGAAGATAATCAAGAGTAACTGACCATTAAGAGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGCCAGAAAGGAAGATAATCAAGAGTAACTGACCATTAAGAGCA  440

seq1  AAAGGAAAACACAATGCGGTCACCATAGGCTTCACCTTTAACAATGGACC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAACACAATGCGGTCACCATAGGCTTCACCTTTAACAATGGACC  490

seq1  AGTTACAACGATTTAAGTTTGAAGACATACATACACACATAAAGATTCAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAACGATTTAAGTTTGAAGACATACATACACACATAAAGATTCAA  540

seq1  TGTTCTG-AACTGGATACTTTTATTTTGTTCACATATCAAAGCCAGAAGC  588
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAAACTGGATACTTTTATTTTGTTCACATATCAAAGCCAGAAGC  590

seq1  CCCTTTATTCACACCTTTATTTACACTGTAGACTGACCACACAAAGGGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATTCACACCTTTATTTACACTGTAGACTGACCACACAAAGGGCT  640

seq1  AGCCTGAGGTCCACGACAGTGCTATTATTCTGCTGAGCAATAGCATAGTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGGTCCACGACAGTGCTATTATTCTGCTGAGCAATAGCATAGTA  690

seq1  CTCACAGTTCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTTCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCT  740

seq1  CTTAATCACCATTCGATACACAGTTTACAGAAAGAATCAATGACAGAAGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCACCATTCGATACACAGTTTACAGAAAGAATCAATGACAGAAGG  790

seq1  GATCCTCACCCACTTATGTCTTACTGTGATGGTAAGGATTTATGAAAGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACCCACTTATGTCTTACTGTGATGGTAAGGATTTATGAAAGAT  840

seq1  CTACATCCTATGTAAGTTTTCTACGATGCAAGTTTTGTACTCTGCAATTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTATGTAAGTTTTCTACGATGCAAGTTTTGTACTCTGCAATTC  890

seq1  TCCTGCTTAAGGAAAAAATAAGGATGCTGGAGAAGTTTTAGATGTTGGTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTAAGGAAAAAATAAGGATGCTGGAGAAGTTTTAGATGTTGGTA  940

seq1  ATATAATAGTCCATACAAAGTATATGTCCAAGAGACCCTCCTGATCAGAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAGTCCATACAAAGTATATGTCCAAGAGACCCTCCTGATCAGAG  990

seq1  CCTGGTAGAGGTTCTGCCCATTGTGCACTGTCTAATAATATTTTATTAGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGAGGTTCTGCCCATTGTGCACTGTCTAATAATATTTTATTAGG  1040

seq1  TAAAAAAGAAGGATCACCTTAAACAGTAGCTAATCAAATGAGTTACTGTG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAAGGATCACCTTAAACAGTAGCTAATCAAATGAGTTACTGTG  1090

seq1  TTTGCTTGGTTCTTCTTTTAGGACATCTCATACCCCTTTTCTGCTTGAAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGTTCTTCTTTTAGGACATCTCATACCCCTTTTCTGCTTGAAA  1140

seq1  ATAGGAGAATTC  1150
      ||||||||||||
seq2  ATAGGAGAATTC  1152