BAC Information

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BAC

Clone NameB6Ng01-085J08
Chromosome17 (Build37)
Map Location 37,939,321 - 37,940,408
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123
Downstream geneOlfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J08.bB6Ng01-085J08.g
ACCDH899220DH899221
length1,0681,276
definitionDH899220|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J08, 5' end.DH899221|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacattctgacccatgatctgcacctttccaaatattgtaatttt
cttactttagtcaagaaaatacagttcaaaatctaattcctactatattt
atatgtgtgtatgtacgtatgtgtgtgtataattaattgtatataggata
tcatatatgtggtatatacatatacccatatataaaacatataccatata
tataaaatccctttatggatataattttgatatgtgtgataaatatggaa
ttcatcttgagagaacttcaaattgggtgttctttttgggtaactataag
actttatgaacaagagcatgtactaaactatatactataggtgactactt
cataatatttaaatttgaattttaaaagaattctgatatattacattagt
atcttgctatcactactttttcttgtctttaatctaaatgagttccttta
atatttttctccagaaaaacctttcactttttcattacatgcctgaggca
tagtaagaaatattatatatttatccttctacctctatttataaaattcc
tatcaataatcaataaatatatatattttactttgggagaatcagtgggc
tttgagtgtatcacttcataacttttaaggaggctacccgttaaaacaga
tcaaagtacttagatataaactctgtattgttttcagaaccattgaaaat
ataaattcatttattttgtccttaaagacatacagctgtagcatttgata
tatgaaactaattgggatgtcctaaacaccattactgtgattaacttatg
cagtaaaatcactatcacattgctccagagatttgcagatgcttatgacc
ctctatggaaactaagttgattattgagacttcaccttaaaaattcgttc
ttatacacatcagtaccgttctcattcaaatcatccatatagtccactct
ctttccactctttcagggactgtgtctttagaatatggttcaacaacaag
ctgattactggattaaatctcacgggatgggacaggagctattcctggtc
aactaagaaaaaagtttt
gaattctcctctgaaaaaacagacttggaggaggaagcagctcattatga
gagaaaagggtaccagccagataaaatgctagctaatcagttaaggaaaa
agccaaaagcggctggcgaaggccagcatgctgctcggcctccgggcagt
cggcttcaaggtcatagtgcacttctgccctatgcggagccctcgccctg
cgtagtgtgccagccctacgcagagaggcaatgtgcagactcattcattc
ccagagaggaacaaaggaaaatgcaacaggcatttctggtctttgaagga
gctgagcagtggtggcacacaccgttaatcccagcacttgggagacagag
gcaggctcttgcagcctacaaggtcttattggccaccctggagttgtaga
tcaggattataaaggggaacttcaggttctctgttcttgtcctcaagttg
tcttttctatatcacaaggagacagaatagctcaactaataattttgcca
agcctacatggctgttttccttcctctgatattccttgagctgccagagg
gattggttctactaaaaatgattctgattacttaataatgcctttagatt
gttgtcaaattttatctactcctcatataggggtaaaccctcgtggcgtc
aggccattacaggtctggcaaatggatgtcacgcatatttcctcctttgg
gagaaatcaatatttacatgtctcttttgacacctgctctggcatcatgt
ttgcttctccattaaccagagaaaaggcctcacatgtgattcaacattgc
cttgaggcatggagttgcttgggggaaacccaaactccttaagactgata
atggaccagcttatacatctcaaaaattccagcagttctgctgtcagatg
gacgtgacccactgactggactccatacaaccctcaaggacagggtattg
ttgagcgtgtgcatcgcaccctcaattctatttataaaacagaaaggggg
agtcgaggctctacaccgaggtaccagagttttggtgtctatggcactcc
tttaccctcaaatttttaaaacttgatggctctatgcccataccggcggc
tgaacgtcattgtcagaggcagataggcaaatgagaagggttaaatgaaa
atggcccttgtaataaatgggtatggcccagatccattttgatagatcca
ggagctgttgtgagttttccagaggaaagaaacacccattagttgataac
caaatgacactactccccgaaattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37939321_37940408
seq2: B6Ng01-085J08.b_44_1111 (reverse)

seq1  AAAACTTTTTTCTTCTATTCTACAGGAAATGCTGCCTGTCCCATCTCCTT  50
      ||||||||||||||   ||   ||||||  ||| ||||||||||| || |
seq2  AAAACTTTTTTCTT-AGTTGACCAGGAATAGCT-CCTGTCCCATC-CCGT  47

seq1  GAGAATTTAATACAAGAAATTAGCATGTTTCTGAAACAATATTTCTAAAG  100
      ||| ||||||| | || ||| ||| ||||  || ||| ||| ||||||||
seq2  GAG-ATTTAAT-CCAGTAATCAGCTTGTTGTTG-AACCATA-TTCTAAAG  93

seq1  ACACAGTCCCTGGAAAGAAGTGGAAAAAGAGTGGAATTATATGGGATAAT  150
      ||||||||||| ||||| |||||||| ||||||| | ||||| |||| ||
seq2  ACACAGTCCCT-GAAAG-AGTGGAAAGAGAGTGG-ACTATAT-GGATGAT  139

seq1  TTTGAAATGAGGAATGGAATTAATGTGGTAAAAAGAACTAATTTTATAAG  200
      ||   ||||| ||| || | | |||||   | |||||| |||||| ||||
seq2  TT--GAATGA-GAACGGTACTGATGTG--TATAAGAACGAATTTT-TAAG  183

seq1  GTAGAAGTCTCAATAATCAACTTAGTTTTCCATAGATGGTCATAGGCATC  250
      || |||||||||||||||||||||| |||||||||| ||||||| |||||
seq2  GT-GAAGTCTCAATAATCAACTTAG-TTTCCATAGAGGGTCATAAGCATC  231

seq1  TGGAAATTTCTGGAGCAATTTTATAGTGATTTTACTGTATAAGTTAATCA  300
      || |||| ||||||||||| | ||||||||||||||| ||||||||||||
seq2  TGCAAATCTCTGGAGCAATGTGATAGTGATTTTACTGCATAAGTTAATCA  281

seq1  CATTAATGCTGTTTCTTACATTACAATTTATATCATATATCAAATGGTAC  350
      || ||||| |||||   ||||  |||||  | |||||||||||||| |||
seq2  CAGTAATGGTGTTTAGGACATCCCAATTAGTTTCATATATCAAATGCTAC  331

seq1  AGCTGTTTGTCTTTAATTACAAAATAAATGAATTTCAATTTTCAATGGTT  400
      |||||| |||||||||  |||||||||||||||||  |||||||||||||
seq2  AGCTGTATGTCTTTAAGGACAAAATAAATGAATTTATATTTTCAATGGTT  381

seq1  CTGAAAACAATACAGAGTTTATATCTAAGTACTTTGATTTGTTTTAACGG  450
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGAAAACAATACAGAGTTTATATCTAAGTACTTTGATCTGTTTTAACGG  431

seq1  GTAGACTCCTTAAAAGTTATGAAGTGATACACTCAAAGCCCACTGATTCT  500
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTCCTTAAAAGTTATGAAGTGATACACTCAAAGCCCACTGATTCT  481

seq1  TACAAAGTAAAATATATATATTTATTGATTATTGATAGGAATTTTATAAA  550
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTAAAATATATATATTTATTGATTATTGATAGGAATTTTATAAA  531

seq1  TAGAGGTAGAAGGATAAATATATAATATTTCTTACTATGCCTCAGGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTAGAAGGATAAATATATAATATTTCTTACTATGCCTCAGGCATG  581

seq1  TAATGAAAAAGTGAAAGGTTTTTCTGGAGAAAAATATTAAAGGAACTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAAGTGAAAGGTTTTTCTGGAGAAAAATATTAAAGGAACTCAT  631

seq1  TAAGATTAAAGACAAGAAAAAGTAGTGATAGCAAGATACTAATGTAATAT  700
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAAAGACAAGAAAAAGTAGTGATAGCAAGATACTAATGTAATAT  681

seq1  ATCAGAATTCTTTTAAAATTCAAATTTAAATATTATGAAGTAGTCACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATTCTTTTAAAATTCAAATTTAAATATTATGAAGTAGTCACCTA  731

seq1  TAGTATATAGTTTACTACATGCTCTTGTTCATAAAGTCTTATAGTTACCC  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGTATATAGTTTAGTACATGCTCTTGTTCATAAAGTCTTATAGTTACCC  781

seq1  AAAAAGAACACCCAATTTGAAGTTCTCTCAAGATGAATTCCATATTTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACACCCAATTTGAAGTTCTCTCAAGATGAATTCCATATTTATC  831

seq1  ACACATATCAAAATTATATCCATAAAGGGATTTTATATATATGGTATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATCAAAATTATATCCATAAAGGGATTTTATATATATGGTATATG  881

seq1  TTTTATATATGGGTATATGTATATACCACATATATGATATCCTATATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATGGGTATATGTATATACCACATATATGATATCCTATATACA  931

seq1  ATTAATTATACACACACATACGTACATACACACATATAAATATAGTAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATACACACACATACGTACATACACACATATAAATATAGTAGGA  981

seq1  ATTAGATTTTGAACTGTATTTTCTTGACTAAAGTAAGAAAATTACAATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTTGAACTGTATTTTCTTGACTAAAGTAAGAAAATTACAATAT  1031

seq1  TTGGAAAGCTACAGATCATGGGTCATGAATGTGAATTC  1088
      |||||||| | |||||||||||||| ||||||||||||
seq2  TTGGAAAGGTGCAGATCATGGGTCA-GAATGTGAATTC  1068