BAC Information

Click to search

BAC

Clone NameB6Ng01-086B05
Chromosome17 (Build37)
Map Location 50,560,916 - 50,676,187
singlet/doubletdoublet
Overlap genePlcl2
Upstream geneMocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B05.bB6Ng01-086B05.g
ACCDH899572DH899573
length1,1551,108
definitionDH899572|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B05, 5' end.DH899573|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,560,916 - 50,561,726)(50,675,067 - 50,676,187)
sequence
gaattcttggacaccgctggcttctgcaggctctggatacctgggttttg
tgaccttagctgccccattgtacccactaaccaaggaaggggagatgttt
gtgtggactccagatcaccagaaagcctttgaagaagttagaacctgttg
ccagcaggtgttttttgttttttttgttttgttttgtttttgtttttgtt
ttgttttgttttttgcctaaaagctattgctgtcatagctctacttgtca
aggatgctgtagtggcaccccacgctcttgaaagcattacccaatagtcc
cctgaccgatggatgaccaacggtcgtatgacacattatcagagcctttt
gttgaccaaatgagtgactttcattcccctgctgtcctcaatccctttac
cctactgtctgagactgatgactcttcacctactcatcactgcgctgaca
ttctggcagaagaagctgatactcgaaatgatctgaaggatcagccttgg
cctgggagtcggagctggtccaagaatggcagtagcttcatagttgaagg
taagcggaaggcgggggcagcagtggtggacagaaagcaagtgatctagg
ccagcagcctccctgaagagacttcggcccagaaagccaaacttgtggct
ttgatacaaactctacgaatggcaaacaggaagtctatcaacatttacac
tgacagcaggtatacttttgccacggcacagagcaatatacagacaaagg
gggctgttgacatccgcagagaaagacctaagatgctatggctaaaggga
atcagatgacagacctaaccaccaagcagcagcccagagtgttaaccttc
tgcctgtagcagaaaagtccaaaacccctgtggaagtacaccctggaaga
ctggcaagaaataaaagatagaccagttctctaggatcccagagaggact
tgctaaacctcagaaggtaagagatcctacccttcaaaaaggactagata
tgtccacagatacatcacccacccacctaagagctaaacatctgcagaga
ctggttagaacatccctttatcatgttctgagatatcaggggtgctgact
cgtcgtcaaactttgtggtttcttgccagcctggttaatgctcatctcgg
aatgc
gaattcaaaacaagagcttgaaacagaaaccatagaagaactctgcttaa
tgacttgcttccaggttacatttagttacctttcttcaacaattcaggcc
ccatctacctagcaatggtacctcccacagcaggctgggacctcctacat
taattaacaatcacagaaatgcccacaggctttctgcaaaggcaggtgat
ggtggaagaaagggcaggaggaagggaagttaagcctgtgttggtgacaa
gagccctgaactagaatcagagggcagacaaaagtgagcgagcgaccctg
agagttcagtcagctggtgggaggagaccatcttctagcaataccagcct
catcttatctagtcccatgtgatgaagtcatgaagtattatacagctacc
taggattcatctcatagccaacaataattcagatttgttaataattttta
ttaaattaaaatgtttctttacaatgttagggcctgaacctaaaacatcc
tgcattagcatttctaaaagcaaagagaagaataactcgaagaaaacagt
aactcaagagagagcgcctggcctcattgtcaggaacctgcagatttaat
tttgactttttgagccatcactttgcactgcagtataagtctcaggtccc
ttcagagaacaatggtagcaaactgctaagtgggctgttatactttgttg
ttgttctgttttgttttttactttgtttctacaaactcaacctcttatga
taaagcacttaataggaaaatcactgtgcagatgtgaaagcactaagaaa
agattgtcagactacactagttctgcctctctcaactctacacaagtgga
tgtgggtcctggtcagatgagaatgcgtatgtctaaacatgtcagtattg
aatccacccaatgaaatatacccacttcttttatttcttagcaaatcagt
cataaccttgatacagtttccaaatactatatggctacttttcaaaacta
catggaaagtaattttgtaaattcaacaaaaagacaatacagagtcatga
gcaaagagttggttctttgaaaaaaatcatagggtgacaatgctcatcca
ataactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50560916_50561726
seq2: B6Ng01-086B05.b_386_1189

seq1  AGCCTTTTGTTGACCAAATGAGTGACTTTCATTCCCCTGCTGTCCTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTGTTGACCAAATGAGTGACTTTCATTCCCCTGCTGTCCTCAAT  50

seq1  CCCTTTACCCTACTGTCTGAGACTGATGACTCTTCACCTACTCATCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACCCTACTGTCTGAGACTGATGACTCTTCACCTACTCATCACTG  100

seq1  CGCTGACATTCTGGCAGAAGAAGCTGATACTCGAAATGATCTGAAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGACATTCTGGCAGAAGAAGCTGATACTCGAAATGATCTGAAGGATC  150

seq1  AGCCTTGGCCTGGGAGTCGGAGCTGGTCCAAGAATGGCAGTAGCTTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCCTGGGAGTCGGAGCTGGTCCAAGAATGGCAGTAGCTTCATA  200

seq1  GTTGAAGGTAAGCGGAAGGCGGGGGCAGCAGTGGTGGACAGAAAGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGTAAGCGGAAGGCGGGGGCAGCAGTGGTGGACAGAAAGCAAGT  250

seq1  GATCTAGGCCAGCAGCCTCCCTGAAGAGACTTCGGCCCAGAAAGCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGCCAGCAGCCTCCCTGAAGAGACTTCGGCCCAGAAAGCCAAAC  300

seq1  TTGTGGCTTTGATACAAACTCTACGAATGGCAAACAGGAAGTCTATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTTGATACAAACTCTACGAATGGCAAACAGGAAGTCTATCAAC  350

seq1  ATTTACACTGACAGCAGGTATACTTTTGCCACGGCACAGAGCAATATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACTGACAGCAGGTATACTTTTGCCACGGCACAGAGCAATATACA  400

seq1  GACAAAGGGGGCTGTTGACATCCGCAGAGAAAGACCTAAGATGCTATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGGGGCTGTTGACATCCGCAGAGAAAGACCTAAGATGCTATGGC  450

seq1  TAAAGGGAATCAGATGACAGACCTAACCACCAAGCAGGCAGCCCAGAGTG  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAAGGGAATCAGATGACAGACCTAACCACCAAGCA-GCAGCCCAGAGTG  499

seq1  TTAACCTTCTGCCTGTAGCAGAAAAGTCCAAAACCCCTGTGGAAGTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTCTGCCTGTAGCAGAAAAGTCCAAAACCCCTGTGGAAGTACAC  549

seq1  CCTGGAAGACTGGCAAGAAATAAAAAGATAGACCAGTTCTCTAGGATCCC  600
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTGGAAGACTGGCAAGAAAT-AAAAGATAGACCAGTTCTCTAGGATCCC  598

seq1  AGAGAGGACTTGCTAAACCTCAGAAGGTAAGGAGATCCTACCCTTCAAAA  650
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGAGGACTTGCTAAACCTCAGAAGGTAA-GAGATCCTACCCTTCAAAA  647

seq1  AGGACTAGAATATGTCCAACAGATACATCACCCAACCCACCTAAGAGCTA  700
      |||||||| |||||||| ||||||||||||||| ||||||||||||||||
seq2  AGGACTAG-ATATGTCC-ACAGATACATCACCC-ACCCACCTAAGAGCTA  694

seq1  AACATCTGCAGAGACTGGTTAGAACATCCCTTTATCATGTTCTGAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACATCTGCAGAGACTGGTTAGAACATCCCTTTATCATGTTCTGAGA-TA  743

seq1  TCAGGAGTGGCTGACTCGGTCGTCAAACTTTGT-GTGTCTTGCCAG-CTG  798
      ||||| || |||||||| ||||||||||||||| || ||||||||| |||
seq2  TCAGGGGT-GCTGACTC-GTCGTCAAACTTTGTGGTTTCTTGCCAGCCTG  791

seq1  GTTAATGCTCATC  811
      |||||||||||||
seq2  GTTAATGCTCATC  804

seq1: chr17_50675067_50676187
seq2: B6Ng01-086B05.g_67_1174 (reverse)

seq1  TTAGTTAATTTGGATGAGCATTTGTCACCCTTATTGATTTTTTTTTCAAA  50
      |||||||  ||||||||||| ||||||||||   |||  |||||||||||
seq2  TTAGTTA--TTGGATGAGCA-TTGTCACCCT--ATGA--TTTTTTTCAAA  43

seq1  GAACCAACTCTTTGCTTCATTGACTCCTTGTATTGTTCTTTTTGTTGAAT  100
      ||||||||||||||| ||| ||||||  ||||||| ||||||||||||||
seq2  GAACCAACTCTTTGC-TCA-TGACTC--TGTATTG-TCTTTTTGTTGAAT  88

seq1  TTACAAAATTACTTTCCATGTTAGTTTTGAAAAGTAGCCATATAGTATTT  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTACAAAATTACTTTCCATG-TAGTTTTGAAAAGTAGCCATATAGTATTT  137

seq1  GGAAACTGTATCAAGGTTATGACTGATTTGCTAAGAAATAAAAGAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGTATCAAGGTTATGACTGATTTGCTAAGAAATAAAAGAAGTGG  187

seq1  GTATATTTCATTGGGTGGATTCAATACTGACATGTTTAGACATACGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTCATTGGGTGGATTCAATACTGACATGTTTAGACATACGCATT  237

seq1  CTCATCTGACCAGGACCCACATCCACTTGTGTAGAGTTGAGAGAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGACCAGGACCCACATCCACTTGTGTAGAGTTGAGAGAGGCAGA  287

seq1  ACTAGTGTAGTCTGACAATCTTTTCTTAGTGCTTTCACATCTGCACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTAGTCTGACAATCTTTTCTTAGTGCTTTCACATCTGCACAGTG  337

seq1  ATTTTCCTATTAAGTGCTTTATCATAAGAGGTTGAGTTTGTAGAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATTAAGTGCTTTATCATAAGAGGTTGAGTTTGTAGAAACAAA  387

seq1  GTAAAAAACAAAACAGAACAACAACAAAGTATAACAGCCCACTTAGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAACAAAACAGAACAACAACAAAGTATAACAGCCCACTTAGCAGT  437

seq1  TTGCTACCATTGTTCTCTGAAGGGACCTGAGACTTATACTGCAGTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACCATTGTTCTCTGAAGGGACCTGAGACTTATACTGCAGTGCAAA  487

seq1  GTGATGGCTCAAAAAGTCAAAATTAAATCTGCAGGTTCCTGACAATGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTCAAAAAGTCAAAATTAAATCTGCAGGTTCCTGACAATGAGG  537

seq1  CCAGGCGCTCTCTCTTGAGTTACTGTTTTCTTCGAGTTATTCTTCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGCTCTCTCTTGAGTTACTGTTTTCTTCGAGTTATTCTTCTCTTT  587

seq1  GCTTTTAGAAATGCTAATGCAGGATGTTTTAGGTTCAGGCCCTAACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGAAATGCTAATGCAGGATGTTTTAGGTTCAGGCCCTAACATTG  637

seq1  TAAAGAAACATTTTAATTTAATAAAAATTATTAACAAATCTGAATTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACATTTTAATTTAATAAAAATTATTAACAAATCTGAATTATTG  687

seq1  TTGGCTATGAGATGAATCCTAGGTAGCTGTATAATACTTCATGACTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATGAGATGAATCCTAGGTAGCTGTATAATACTTCATGACTTCAT  737

seq1  CACATGGGACTAGATAAGATGAGGCTGGTATTGCTAGAAGATGGTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGACTAGATAAGATGAGGCTGGTATTGCTAGAAGATGGTCTCCT  787

seq1  CCCACCAGCTGACTGAACTCTCAGGGTCGCTCGCTCACTTTTGTCTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCTGACTGAACTCTCAGGGTCGCTCGCTCACTTTTGTCTGCCC  837

seq1  TCTGATTCTAGTTCAGGGCTCTTGTCACCAACACAGGCTTAACTTCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTAGTTCAGGGCTCTTGTCACCAACACAGGCTTAACTTCCCTT  887

seq1  CCTCCTGCCCTTTCTTCCACCATCACCTGCCTTTGCAGAAAGCCTGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCCTTTCTTCCACCATCACCTGCCTTTGCAGAAAGCCTGTGGG  937

seq1  CATTTCTGTGATTGTTAATTAATGTAGGAGGTCCCAGCCTGCTGTGGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTGATTGTTAATTAATGTAGGAGGTCCCAGCCTGCTGTGGGAG  987

seq1  GTACCATTGCTAGGTAGATGGGGCCTGAATTGTTGAAGAAAGGTAACTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTGCTAGGTAGATGGGGCCTGAATTGTTGAAGAAAGGTAACTAA  1037

seq1  ATGTAACCTGGAAGCAAGTCATTAAGCAGAGTTCTTCTATGGTTTCTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCTGGAAGCAAGTCATTAAGCAGAGTTCTTCTATGGTTTCTGTT  1087

seq1  TCAAGCTCTTGTTTTGAATTC  1121
      |||||||||||||||||||||
seq2  TCAAGCTCTTGTTTTGAATTC  1108